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LOCUS XM_017151784 1619 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017151784 VERSION XM_017151784.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151784.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1619 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1619 /gene="Dus2" /note="Dihydrouridine synthase 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108064304" CDS 85..1515 /gene="Dus2" /codon_start=1 /product="tRNA-dihydrouridine(20) synthase [NAD(P)+]-like" /protein_id="XP_017007273.2" /db_xref="GeneID:108064304" /translation="MQSMRLPIQILARSLGISMKTRQRLDYRDKLILAPMVRVGTLPM RLLALEMGADIVYTEELVDLKLIKSIRRPNAALGTVDFVDPSDGTIVFRTCAQETSRL VLQLGTSDPNRALAVGQLLQRDIAGLDINMGCPKEFSIKGGMGAALLSDPAKAALILR TLCSGLDIPVTCKIRILPDVAQTIDLVQQLAATGIAAIGIHARTRDERPQHPAHPEVL RAVAQAVDIPIIANGGSKSMHCHEDLRKFQADCGAASVMVARAAQINVSIFRKEGLLP MDELIERYLRLCVDYDNAPHNAKYCVQSILRELQETPRGKRFLQCQTLQQMCEIWQLG DYCRRRQRELRTLGNSGRAEVEPPEAQAKRQKLEEISSGDEYSNVICRNMPFLRSTYP SDNHLPKTQLYVHAAREGKSPPAYETQQCDKLFRSICSFDGQRFSSSFWEKNKKQAEQ GAALVALLHLGQLEAQVLRDNGSLLN" misc_feature 172..897 /gene="Dus2" /note="Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801" /db_xref="CDD:239200" misc_feature order(184..192,262..264,397..399,475..477,601..603, 685..687,778..780,784..786,859..864) /gene="Dus2" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:239200" misc_feature order(397..399,484..489,601..603,607..609,682..687, 691..696,781..786,862..864) /gene="Dus2" /note="active site" /db_xref="CDD:239200" misc_feature order(484..486,607..609,685..687,691..693) /gene="Dus2" /note="catalytic residues [active]" /db_xref="CDD:239200" misc_feature order(487..489,601..603,682..684,694..696,781..786) /gene="Dus2" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:239200" misc_feature 1273..1467 /gene="Dus2" /note="double-stranded RNA binding motif of tRNA-dihydrouridine(20) synthase [NAD(P)+]-like (DUS2L) and similar proteins; Region: DSRM_DUS2L; cd19871" /db_xref="CDD:380700" misc_feature order(1273..1275,1279..1284,1291..1296,1303..1308, 1321..1326,1345..1347,1348..1353,1357..1359,1411..1422, 1429..1434) /gene="Dus2" /note="putative RNA binding site [nucleotide binding]; other site" /db_xref="CDD:380700" polyA_site 1619 /gene="Dus2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggtggcccaa tcgcgtgcat agacccccca aaaaaacggc gtgcgaacag ctgaaagatt 61 cgattcgatt cgctccataa atccatgcaa tccatgcgac tgcccatcca gatcctcgcg 121 aggagtctcg gcatcagcat gaagacgcgc cagcggctgg actaccgcga caagctcatc 181 ctggcgccga tggtgcgcgt gggcacgctg ccgatgcgac tgctcgcctt ggaaatgggc 241 gcggatatcg tttacacgga ggagttggtc gatctcaagc tgatcaagag cattcgcagg 301 ccaaatgccg ccctgggaac cgtggacttt gtggatccct ccgacggcac catagttttt 361 cgcacctgcg cccaggagac ctcccgtttg gtcctccagc tgggcaccag tgatcctaac 421 cgcgctttgg ccgtgggcca gctgctgcag cgcgacattg ccgggctgga catcaacatg 481 ggctgcccca aggagttctc catcaagggc ggcatgggcg ccgctctgct ttcggatccc 541 gccaaggcgg ccctcatcct gcgcaccctg tgctccggcc tggacattcc ggtcacctgc 601 aagattcgca tcctgccgga tgtcgcgcaa accattgatt tggtccagca actggccgcc 661 acgggcattg cagcgatcgg gattcatgcg aggacgcgcg acgagcgacc gcagcatccg 721 gcgcatcccg aagttctgcg cgccgttgcc caggcggtgg acataccgat catagcgaat 781 ggcggctcca agtccatgca ttgccacgag gatttgcgca aatttcaggc ggattgcgga 841 gcagccagcg tgatggtggc gcgggctgcc cagataaatg tgagcatctt tcgcaaggag 901 ggcctgctgc ccatggatga gttgatcgag agatacctcc gcctgtgcgt cgactacgac 961 aatgcgccgc acaacgccaa gtactgtgtg cagagcattt tgcgtgagct gcaggagacg 1021 ccgcgcggca agcgctttct gcagtgccag acgctgcagc agatgtgcga gatttggcag 1081 ctgggcgact actgccgaag gaggcagcgc gaactccgca cgctgggcaa ctcgggaagg 1141 gcggaagtgg agccgccaga ggcgcaggcc aagcggcaga agctggagga gatttcttca 1201 ggagatgagt actctaacgt catttgccgc aacatgccct ttctgcgctc cacctacccg 1261 agcgacaatc atttaccgaa aacgcagctc tatgttcatg ccgcgcggga gggcaaatcc 1321 ccgccagcct acgagacgca gcagtgcgac aagctcttcc gttcgatctg ctcgttcgac 1381 gggcagcgct tcagcagctc cttctgggag aagaacaaga agcaggcgga gcagggcgcc 1441 gcgttggtgg ccctcctcca tctcggacag ctggaggcgc aggttctgcg cgacaatggc 1501 agcctgctca actgatggat tgtttattaa tgctaatgat acctactccc cttgattgtt 1561 tgcctttaat gtgggtgcta aatgtatatt ttctaaataa aagaagcaca taagggtta