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LOCUS XM_017150640 3358 bp mRNA linear INV 09-DEC-2024 su(r) (su(r)), mRNA. ACCESSION XM_017150640 VERSION XM_017150640.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017150640.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3358 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3358 /gene="su(r)" /note="dihydropyrimidine dehydrogenase su(r); Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108063520" CDS 177..3278 /gene="su(r)" /codon_start=1 /product="dihydropyrimidine dehydrogenase [NADP(+)]" /protein_id="XP_017006129.2" /db_xref="GeneID:108063520" /translation="MSPPQLLSKDSPDIEDLLSLNPRVKTQCSVVPTKQTKENKKHWK RNSDHAAPPCTTLSNDFSDIKHTTLSERGALEEAARCLKCADAPCQKSCPTQLDIKSF ITSIANKNFYGAAKAIFSDNPLGLTCGMVCPTSDLCVGGCNLQASEAGAINIGGLQQF ATEVFKKMGVRQRLSPQAQANPLLQKVALLGGGPASLSCATFLARLGYRNVTIYERRS YLGGLSAAEIPQYRLPIDAVNFEIDLVRNLGVRIETGRSLGTGDLTIEGLLANGAHDA VFVGIGLPEPKLNPIFAGLEPGNGFYTSKNFLPLVSDGSKPGLCACKAAGGGLPKLHG NVIVLGAGDTAFDCATSALRCGARRVFVVFRKGSSGIRAVPEEVELARDERCELLPYL SPRKVIVKDGLITAMEFCRTEQNDQDEWVEDEEQTQRLKANFVISAFGSGLEDQDVRA ALAPLQFRGELPLVDRVTMQSSLPQVFLGGDLAGVANTTVESVNDGKVAAWSIHCQLQ GLPLDTPAALPLFYTDIDAVDISVEMCGLRFENPFGLASAPPTTSTAMIRRAFEQGWG FVVTKTFGLDKDLVTNVSPRIVRGTTSGYKYGPQQGCFLNIELISEKRAEYWLKSIGE LKRDFPEKIVIASIMCSFNEADWTELSIKAEQSGADALELNLSCPHGMGERGMGLACG QDPQLVEQISRWVRKAVKLPFFIKLTPNITDIASIAEAAKRGGADGGSAINTVQGLMG LKADSTAWPAIGREQRTTYGGVSGNATRPMALKAISDIARRVPGFPILGIGGIDSGEV ALQFIQAGATVLQICSSVQNQDFTVIEDYCTALKALLYLKANPPPVDGPFWDGQSPPT PVHQKGKPVVRLTGEGNVTLGFFGPYQRQRDLKMAELRAEKGALWDAEQQVENTSPAD GALKAAPRIQDVIGAALDKIGPYNKLDNKQQKVALIDDDMCINCGKCYMTCADSGYQA IEFDKDTHIPHVNDDCTGCTLCVSVCPIIDCITMVPKKIPHVIKRGVEEKTFYTHALS QCQ" misc_feature 339..1703 /gene="su(r)" /note="dihydropyrimidine dehydrogenase subunit A; Provisional; Region: PRK11749; cl46914" /db_xref="CDD:481254" misc_feature 1761..2669 /gene="su(r)" /note="Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and...; Region: DHPD_FMN; cd02940" /db_xref="CDD:239244" misc_feature order(1821..1826,1836..1844,1848..1853,1914..1922, 1926..1943,1995..1997,2001..2003,2010..2018,2025..2027, 2034..2036,2046..2048,2307..2312,2382..2387,2448..2453, 2469..2471,2481..2483,2493..2495,2502..2507,2577..2579, 2586..2588,2625..2630,2634..2642) /gene="su(r)" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:239244" misc_feature order(1887..1892,1935..1937,1992..1994,1998..2000, 2169..2171,2175..2180,2292..2294,2370..2378) /gene="su(r)" /note="active site" /db_xref="CDD:239244" misc_feature order(1887..1889,1935..1937,1992..1994,1998..2000, 2169..2171,2292..2294,2373..2378) /gene="su(r)" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:239244" misc_feature order(1992..1994,1998..2000,2169..2171,2175..2177, 2373..2378) /gene="su(r)" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:239244" misc_feature <2838..3209 /gene="su(r)" /note="Ferredoxin [Energy production and conversion]; Region: NapF; COG1145" /db_xref="CDD:440760" misc_feature 3018..3194 /gene="su(r)" /note="4Fe-4S dicluster domain; Region: Fer4_21; pfam14697" /db_xref="CDD:434137" polyA_site 3358 /gene="su(r)" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cagtgtgaag accaattaaa gtttttcgtg tgttttttcc gtattttttc gcttttcgtt 61 gagcttgtgt gctagtgttt ttttttcctg tgcccaatca aaagattccg cttaaaagtg 121 accataaatt aactaataaa cgttccttca atcgtttccc ggaagagaac ttcgagatga 181 gtccgccgca actgctgagc aaggactccc cggacattga ggacctgctc tccctgaatc 241 cccgcgtgaa gacgcagtgc tcggtggtgc ccaccaagca gacgaaggag aacaagaagc 301 actggaaacg gaacagcgac catgccgccc cgccgtgcac caccctctcg aatgacttct 361 cggacatcaa gcacacgacc ttgtcggagc gcggagctct ggaggaggcg gcgaggtgcc 421 tcaagtgcgc cgacgccccc tgccagaagt cctgtcccac gcagctggac atcaagagct 481 tcatcacgag cattgcgaac aagaatttct acggtgccgc caaggcgatc ttctcggata 541 atcctttggg gctgacctgc ggcatggtct gccccaccag cgatctctgc gtgggcggct 601 gcaatctgca ggcctcggag gcgggcgcca tcaacattgg cggcctgcag cagttcgcca 661 ccgaggtgtt caagaagatg ggcgttcgcc agcgtctttc accgcaggcg caggccaatc 721 cgctgctcca gaaggtggcc ctgctgggcg gcggacccgc ctcgctctcc tgcgccacct 781 tcctggcccg cctgggctat cggaatgtga ccatctacga gcggcggagc tacctgggcg 841 gcctgagtgc cgccgagata ccccagtacc ggctgcccat cgatgcggtg aactttgaga 901 tcgatctggt gcggaatctg ggcgtgcgca tcgaaacggg tcgctcgctg ggcaccgggg 961 atctgaccat cgagggtctg ctggccaatg gcgcccatga tgcggtcttc gtgggcattg 1021 gcctgccgga gcccaagttg aacccgatat ttgcgggtct ggagccggga aatggcttct 1081 atacgtccaa gaacttcctg cccctcgtct cggatggctc gaagccaggt ttgtgtgcct 1141 gcaaggcagc cggcggagga ttgcccaagc tgcatggcaa tgtcatcgtc ttgggagctg 1201 gagataccgc cttcgattgc gccacctccg cgttgagatg cggcgcccgt cgggtgttcg 1261 tggtcttccg caagggctcc tccggcattc gtgccgtgcc cgaggaggtg gaactggccc 1321 gcgatgagcg ctgcgaactg ctgccctatc tatcgccccg caaggtgatt gtcaaggatg 1381 gtctgatcac ggccatggag ttctgccgca ccgagcagaa cgaccaggac gagtgggtgg 1441 aggatgagga gcagacgcag cgtttgaagg ccaactttgt gatctccgcc tttggatctg 1501 gcttggagga ccaagatgtt cgtgcagccc tggctccgct gcaattccgc ggtgagttgc 1561 ccctggtgga tcgcgtgacc atgcagagca gcctgccaca ggttttcctg ggtggtgatc 1621 tcgctggagt ggccaatacc acagtggaat cggtcaacga cggcaaggtg gccgcctgga 1681 gcatccattg ccagctgcag ggtctcccgc tggacacccc agctgctttg ccgctcttct 1741 acacggacat cgatgccgtg gacatttcgg tggagatgtg cggcctgcgc ttcgagaatc 1801 cctttggtct ggcctccgct ccgcccacca ccagcacggc catgatccgt cgtgccttcg 1861 agcagggctg gggcttcgtg gtgaccaaga cctttggact ggacaaggat ctggtcacca 1921 atgtctcgcc gcgcatcgtc aggggcacca catcgggcta caagtacgga ccgcagcagg 1981 gttgcttcct gaatatcgaa ttgatatcgg aaaagcgcgc ggaatattgg ctgaaatcga 2041 taggcgaact gaagcgcgat ttccccgaga agatcgtgat agccagcatc atgtgcagct 2101 tcaacgaggc ggattggacg gagctgtcca tcaaggcgga gcaatcggga gccgatgccc 2161 tcgagctgaa cctctcgtgt ccccatggca tgggcgagcg tggaatgggt ctggcctgcg 2221 gtcaggatcc ccagctggtg gagcagatct cccgctgggt tcgcaaggcc gtcaagctgc 2281 ccttcttcat caaactcacg ccaaatatca cggacattgc ctccattgcg gaggcagcca 2341 agcgaggagg agccgacgga ggatcggcca taaatacggt ccagggattg atgggcctga 2401 aggcagatag caccgcctgg ccggcaattg gccgggagca gcgcaccacc tatggcggcg 2461 tctccgggaa tgccacccgt cccatggcgt tgaaggccat ttcggatatt gcccgccgtg 2521 tgcctggctt cccgatcctg ggcatcggtg gcatcgattc cggcgaggtg gccctgcagt 2581 tcattcaggc cggcgccacc gtcctgcaga tctgctcctc cgttcagaat caggacttta 2641 ccgtcatcga ggattattgc acggcgctga aggcgttgct ctatctaaag gccaatccgc 2701 cgccggtgga tggtcccttc tgggatggcc agtcgccccc gacgcccgtc catcagaagg 2761 gcaaacccgt cgtccggctg accggcgagg gcaacgtgac cctgggcttc tttggtccct 2821 accagcggca gcgcgacctc aagatggccg aactgcgcgc tgaaaagggc gccctctggg 2881 atgctgagca gcaggtggag aatacttcgc cggcggatgg tgctctcaag gcggcgcccc 2941 gcatccagga cgtcatcggc gccgcgctgg acaagatcgg gccgtacaac aagctggaca 3001 acaagcaaca gaaggtggcg ctcatcgatg atgacatgtg catcaactgc ggcaagtgct 3061 atatgacgtg cgccgattcc ggttaccagg ccatcgagtt cgacaaggac acccacattc 3121 cgcacgtgaa cgacgattgc acgggctgca cactctgcgt atccgtgtgt cccatcatcg 3181 actgcatcac catggtgccc aagaagatcc cgcacgtgat caagcgagga gtcgaggaga 3241 agaccttcta cacccatgcc ctcagccagt gccagtgaat gtgcctagtt ctacgctaag 3301 ttgatattaa aagccatcta tataattcaa ttaaatacaa tacatattcc aaaagcaa