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LOCUS XM_017149868 4576 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017149868 VERSION XM_017149868.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017149868.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4576 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4576 /gene="LIMK1" /note="LIM domain kinase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108062968" CDS 251..4012 /gene="LIMK1" /codon_start=1 /product="LIM domain kinase 1 isoform X1" /protein_id="XP_017005357.2" /db_xref="GeneID:108062968" /translation="MHHQQRLRANGGRGGGGGGSGGSGGMGGHPPLCAHCRGQLLPHP EEPIVMALGQQWHCDCFRCSVCEGHLHNWYFEREGLLYCREDYYGRFGDACQQCTAVI TGPVMVAGEHKFHPECFCCTACGSFIGEGESYALVERSKLYCGQCYGKRSCQPADAKA RITTAGKPMHSIRLVEIPKDATPGLRVDGVALDDGCPTVRITEIDVNLTNLHIGDRIL EVNGTPVSDSSVEQIDKLIRSNEKMLQLTVEHDPVQVCRSCSQADIQRAMSASTLILP LSTSASSVEVGRERLYKTPGEPGEQGSKARKLRQATNASATIPPAAGAAIAMTQLKEK ERCSSLSKLLDEQHQAQQHSAHPQLYDLSRTQSCRVVQKPQRIFRASDLVIGEKLGEG FFGKVFKVTHRQSGEVMVLKELHRADEEAQRNFIKEVAVLRLLDHRHVLKFIGVLYKE KKLHMVTEYVAGGCLKELIHDPSQSLSWPQRVCLARDIACGMSYLHSMNIIHRDLNSM NCLVREDRSVIVADFGLARSVDAPRLPGGVGASADRAGGGSMTPGGYGSGANSDAAMS PSGTLRRSKSRQRRQRYTVVGNPYWMAPEMMKGLKYDEKVDVFSFGIMLCEIIGRVEA DPDFMPRNSDFSLNQQEFREKFCAQCPEPFVKVAFVCCDLNPDMRPCFETLHVWLLRL ADDLAAERVPPERLLHEIETFQEWYASSEDALSPTSQRSLNNLDELVKIAAEGESEIS PVEKEKENLVIKPQDIPKSPHLGKDFSPSGERLRDSMRARRRQRFLGAQEERRNLTPE TESKERALKKALKKCRPFGERGYLVDLRPGAELQLQDVRDLNTYSDVDSSCDTSLNYH EVNNLPAPQAPQDAEEVKSAKEEEVLDQEGANHRLAIDDMRNRLHQCRSKFEHLEEAS RRNFNQSQHSMRNFFKTPPVALKMFQRLEHEAAALNGGANCPPPPPRTQRINQTPIFG RKNPPIASSVGQRLQHGESLENLTSSGGASKQLATPAPKRSKAATTTKVQPPLFLPPS ITSSVNGNVSTSTTTTTTSCPPTAPDWLPKKHKLTLPLPSPHPQAAQRSSHNHRPATS NGKGKVVRPPPGRTAQGIPASNGVSPTRSTRPGSPSKHLAQRHTAATAQRLTNAAASH QQQQQQQQSARTTRLNILSPEKVHRLGARLSDQKQKMREEAAATAAASAVGGGAGAGC AASPAAGSLNGHLQGHRTGASGSANPAGGERRRRAAPPPPVRTHFNTRC" misc_feature 347..514 /gene="LIMK1" /note="The first LIM domain of LIMK (LIM domain Kinase); Region: LIM1_LIMK; cd09364" /db_xref="CDD:188750" misc_feature order(347..349,356..358,419..421,428..430,437..439, 446..448,497..499,506..508) /gene="LIMK1" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:188750" misc_feature 533..694 /gene="LIMK1" /note="The second LIM domain of LIMK (LIM domain Kinase); Region: LIM2_LIMK; cd09365" /db_xref="CDD:188751" misc_feature order(533..535,542..544,593..595,602..604,611..613, 620..622,680..682,689..691) /gene="LIMK1" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:188751" misc_feature 755..1006 /gene="LIMK1" /note="PDZ domain of LIM Kinase (LIMK) family, and related domains; Region: PDZ_LIMK-like; cd06754" /db_xref="CDD:467236" misc_feature order(803..823,854..856,863..865,938..940,950..952, 959..964) /gene="LIMK1" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467236" misc_feature 1415..2308 /gene="LIMK1" /note="The protein kinase superfamily is mainly composed of the catalytic domains of serine/threonine-specific and tyrosine-specific protein kinases. It also includes RIO kinases, which are atypical serine protein kinases, aminoglycoside phosphotransferases; Region: Protein Kinases, catalytic domain; cl21453" /db_xref="CDD:473864" misc_feature order(1415..1426,1433..1435,1439..1441,1478..1480, 1484..1486,1571..1573,1619..1630,1760..1762,1772..1777, 1781..1783,1811..1816) /gene="LIMK1" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270870" polyA_site 4576 /gene="LIMK1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atcatgtggt tgattttgtg aagttaatcg atatcaggtg gttgttttgt tttgttttgt 61 ttattatgca tttctttttt attgtttgag ttagcgagtt gtgatttaaa ttagatcgat 121 ttcggccgtc gttgttaata attgcatggc gggaattgga attaaatgag aaaaatgtgc 181 gacaagtcaa tagcaataca agcgaacaat tattgctaac gtaatcgcgg ccaaggcaca 241 aaaacattcc atgcatcatc agcagcgcct gcgggcaaat ggtggacgag gtggaggagg 301 aggcggctct ggaggatcgg gaggaatggg aggacatccg ccgctgtgcg cccattgccg 361 gggccaactg ctgccccatc cggaggagcc catcgtgatg gccctgggtc agcaatggca 421 ctgcgactgc ttccgctgct ccgtctgcga gggccacctg cacaactggt acttcgagcg 481 cgagggacta ctgtactgcc gcgaggacta ctacggccgg ttcggcgatg cctgccagca 541 gtgcacggcc gttatcaccg gacccgtaat ggtcgccggc gagcacaaat tccatccgga 601 gtgcttctgc tgcaccgcct gcggctcctt catcggcgag ggcgagtcct atgcgctggt 661 cgagcggtcg aagctctact gtggccagtg ctacggcaaa cgctcctgcc agccggccga 721 tgccaaggcg cggatcacga cggccggcaa gccgatgcac tccatccgtc tggtcgagat 781 ccccaaggac gccaccccgg gcctgcgggt cgacggagtc gccctggacg acggctgtcc 841 cacagtccga attacagaga tcgatgtaaa tctgacgaac ttgcacattg gcgaccgcat 901 cctggaggtg aacggcacgc ccgtcagcga ttcatccgtg gagcaaatcg acaagctgat 961 acgcagcaac gaaaagatgc tccagctgac cgtcgagcac gatccggtgc aggtgtgtcg 1021 ctcctgcagc caagcggaca tccagagggc catgtccgcg tccacgctca tcctgccgct 1081 cagcacatcg gcctccagcg tggaggtggg ccgggagcgg ctctacaaga cgccgggcga 1141 acccggcgag cagggatcga aggcgcggaa gctgcggcag gccacaaatg cctcggccac 1201 gataccaccg gcagccgggg ctgccatcgc catgacgcag ctgaaggaga aggagcgctg 1261 ctccagtctg tccaagctgc tggacgaaca gcaccaggcg caacagcatt cggcccatcc 1321 gcagctctac gatctgtcca ggacgcagtc gtgtcgagtg gtgcagaagc cgcagcggat 1381 cttccgcgca tcggatctgg ttataggcga gaagctgggc gagggcttct tcggcaaagt 1441 cttcaaggtg acgcatcgcc agagcggcga ggtgatggtc ctcaaggagc tgcatcgcgc 1501 cgacgaggag gcccagcgga acttcatcaa ggaggtggcc gttctccgcc tgctcgacca 1561 tcgccacgtg ctcaagttca ttggcgtgct gtacaaggag aagaagctgc atatggtcac 1621 ggagtacgtg gccggcggct gcctcaagga gctcatccac gatcccagcc agagcctctc 1681 ctggccgcag cgcgtctgcc tggccaggga cattgcctgc ggcatgagct acctgcactc 1741 gatgaacatc atccatcgtg atctgaactc gatgaactgc ctggtgcgcg aggatcgttc 1801 ggttatagtg gcggactttg gcctggcacg cagtgtggat gcaccgcgtc tgccgggcgg 1861 cgttggcgcc tccgcggacc gcgcaggtgg cggctccatg acgccgggcg gctatggatc 1921 tggagccaac agcgatgcgg ccatgtcgcc cagcggaacg ctcaggcgca gcaagagcag 1981 gcagcgaagg cagcgctaca cggtggtcgg gaatccctac tggatggcgc ccgagatgat 2041 gaagggcctg aagtacgatg agaaggtcga cgtcttctcc ttcggcatca tgttgtgcga 2101 gatcattgga cgcgtggaag ccgatcccga tttcatgccc cgcaactcgg acttcagcct 2161 caaccagcag gagttccgcg agaagttctg cgcccagtgc cccgagccct tcgtcaaagt 2221 ggccttcgtg tgctgcgacc tcaatccgga catgcgtccg tgcttcgaga cgctgcacgt 2281 gtggctcctc cggctggccg acgacctggc cgccgagcgt gtgccgcccg agcggctgct 2341 gcacgagatc gagacgttcc aggagtggta cgccagctcc gaggacgccc tgtcgcccac 2401 ctcccagcgc agcctgaata acctcgatga gctggtcaag attgcggcgg agggggaatc 2461 ggaaatctcg cccgtcgaaa aggaaaagga gaatctggtg atcaagccgc aggacatacc 2521 caagtcaccg cacctgggca aggatttctc gcccagcggc gagagattgc gcgacagcat 2581 gcgggccagg cggcgccagc gtttcttggg cgcccaggag gagcggcgca accttacgcc 2641 cgaaacggag tccaaggagc gggccctgaa gaaggccctc aagaagtgtc ggccgtttgg 2701 cgagaggggc tacctggtgg atttgcggcc cggtgccgag ctgcagctgc aggatgtccg 2761 ggatctgaac acatattccg atgtggactc cagttgcgat acgagtttga attaccatga 2821 ggtgaataac ttgccagcac cgcaggcgcc gcaagacgcg gaggaggtca agtcggccaa 2881 ggaggaggaa gtactggacc aggagggcgc caaccatcgg ctggccatcg acgatatgcg 2941 caaccggctg catcagtgcc gcagcaaatt cgagcatctg gaggaggcca gccggcggaa 3001 cttcaaccaa tcgcagcact cgatgcgcaa cttcttcaag accccaccgg tggccctcaa 3061 gatgttccag cgcctggagc acgaggcggc ggcactgaat ggtggcgcca attgcccgcc 3121 gccaccgccg cgcactcagc gcatcaatca gacgcccatt ttcgggcgca agaatccgcc 3181 catcgcatcg agtgtgggcc aaaggctgca gcacggcgaa tccctggaga acctgacctc 3241 cagcggagga gccagcaaac agttggccac accggcgccc aaaaggagca aggctgcgac 3301 gacgacgaag gtccagcctc cactcttcct gccgcccagc atcacaagta gcgtcaatgg 3361 aaatgtgagc accagcacca ccaccacgac caccagttgt ccaccaaccg ctccagattg 3421 gctgccgaaa aagcacaagc tgacgctgcc actgccctcg ccgcatccgc aagctgcaca 3481 gcgatcgagc cacaatcatc gcccggcgac gagcaatggc aagggaaagg tggtgaggcc 3541 accgcccggc cgcacagctc agggaatccc cgccagcaac ggcgtctcgc ccaccaggag 3601 cacccggccg ggctcgccca gcaagcattt ggcccagagg cataccgccg ccacggccca 3661 gcgactgaca aatgctgccg cttcgcacca gcaacagcaa cagcagcaac agtccgcgag 3721 gacgacgcgc ctgaacatcc tcagtccgga gaaggtgcat cgcctgggag cccgtctcag 3781 cgatcagaag cagaaaatgc gcgaagaggc cgcggcgaca gcggctgcct cagccgtcgg 3841 tggaggagca ggagcaggat gtgcggcctc gccagcggcg ggatctttga atggtcacct 3901 gcagggtcat cgaaccgggg catccggatc ggcgaatccg gcgggcggtg aaaggaggag 3961 gcgagcggct ccaccgccac cagtgcgcac gcatttcaat acgcgctgct agccactcgc 4021 atatatgctc gattgtcaag tgttgtgcaa agtttattgt tccactcagg aagctctttt 4081 tttttaacgt cctaactgtt ttaatttgta atatcgttcg cttttgtact gtacagatgc 4141 agaaatacct agattcctag tatattccac aatttaagca taatccacta aatttctgta 4201 acaattccat aattcctatg tataacgaga cattttgtat aaatatgtaa tgccttttga 4261 aatgtaaata actcgaatca accagtgaac tgttgcgctg ttgaaaacgc aaatgttata 4321 cgcacacatg acaacattcc aggaaaagtg tttattttat agttttcttt tttttttttt 4381 gattttaaca ttcgatttta agtttgaact aaacgaaggt taagtgcctg ttaagagaga 4441 aaaccaagaa gttgcaatat ttacatagat tgtataaaaa ccaagcgaat aattatagta 4501 attaagatta cagggtaaca gctgttccga ctaacctaac gaactcaact aaaatgctaa 4561 gcaattaatc gtttaa