Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017148918 7078 bp mRNA linear INV 09-DEC-2024 transcript variant X3, mRNA. ACCESSION XM_017148918 VERSION XM_017148918.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017148918.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7078 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7078 /gene="Ubr1" /note="Ubr1 ubiquitin ligase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108062312" CDS 418..5964 /gene="Ubr1" /codon_start=1 /product="E3 ubiquitin-protein ligase UBR1 isoform X2" /protein_id="XP_017004407.2" /db_xref="GeneID:108062312" /translation="MDRYDMEDVVVAPPAECSSPLKEWRLKRQAGTLARSDFIEFFKR ESPKYFDYQTGGTETDTNALTLKCMFKEALAKEEIIDVLVEFMLGDNPASALEKLRLE GNTATVCGKVFKNGEPTYSCRECGVDPTCVLCVNCFKRSAHRFHKYKMSTSGGGGCCD CGDDEAWKKDHYCQLHLANRKNPLESKILTDAVLERAEICFGAILAFCVNYLEIEPNA SLQCLDGNVEGGQVDGAQYCTVLYNDESHTFDQVIQTLTKIAKCKHKDAMEIVAAIDR EGRAVVKCDTFKECNDLKTAIENQMIPATALLTNPRNNQSLRTSVLHIGAVACQQFAL QLLGWFQEFLVRHYLFRKTFAELVQRKQEAFCIRHILEYDVKLWKTARTCWHRLLISG MLMEYDNKMVLAQEFSRRYATIVEDFISDDHDHAFSIVSLSVQLFTVPSIAHHLIAHE GIFDKLLHTFYHVAIEKFIQNKTLHFSKNIASLTFFKRANYILYDLRYLLSLKPELLN NDLRSGFLEGCRALMRVLNVMQGMESITRQTGQHMDYEPEWECAFNLHIKLATTISQV IEWAAGDVKLLRKLYKMTVRALVSNSFIVGGEKTETRSVAGHVANCLMYDVSVKPVSI HLPLSRFYAGIYLHLGAHEMTYDSLQTETEALSIKLTPREIIEPVLCTHAMIAQVAAG MWRRNGYSLLHQLYFYRNVRCRVEMLDRDIVCLQIGASLMESNEFLIHVLNKFNLIAW AQATYETMLAESPVDDEFMRQLSMIDEFLELLIVIIGERWMPGVSMVTEEDRLRKEII QLLCTKSYSHSELSRALPDGNSGNSDNIFEDVINTVAVFKKPVGVESKGVYELKEHLF EEFNVYFYHYTKEDKSKAEELQRERRKAKKQLVCCPPPMLPQLTPAFTSMANILQCNV FLSICTLVMERALDARSRSFTESHLQKILHLLGFAIQEELSEHYPFLSFYERSQHYGI LEKLDDLARCPRLEAHRDFVVWTIKRYKELQAKQAPSDSQPSGSQQCSGGGGASEEQP LSSEEQARQEKEIRARLAAERRAKIMAQMQSAQKSFMKSNAEMFAASEKETSGSTGAM EWEDIPAEGEEAAQDDGQEQEQGAVALRPTVVACLGPERKIYQGSEANFKCILCFENC AISRSGPPLVSSAFVQTSRVIFTTPNMRAGPSALHMSCCGHVMHHSCWQEYYSNEESK EQRRPHRNRVALSQAHNVEFHCPYCRTLSNTVLPVTEALPAFSPAPSASDSYLPLDSF VEIMRTLAADLGAMRDEEMCQFPSVAGILRKSGVVGDMAQFERSVQLIRDPPKLHANY SDVMAFLSKALLNARQSQQSHLKEQQGTSTGTATLDPDSIELVPLLWDTCSYTLQALE IYLFEVQKPLKAELPMRHQSCAINLVRACSRFAASRCNFELELGEIPLSPSLRLQAEY SARLLNEIFNQKGSSVLEWDCFRKLVPLQFGVLNLMTAESANQTVIPSGSMFDFYILQ TMFLAQLTKAVLCFDVDREQAKRPGHAELTQLAYVEQLPARIRDNMVAFYRRYNIAAR VLQASKQKQLAEEQQKEGDQQQQQTTVVIPCEPHHLALLLEYVQRQMSSFLRCACLFY RCLTDIDFPDTFPTDQPDRFELMCQYLGLEPQLGVYFDMETVYATMMHSFASHPHIGR EIEQRGQPEEVRRCLQLEPCLRPLPRLKPLYDDYSDLINSVSDIFCPNNEREEMKTPT MCLICGSILCGQSYCCQPELGKMSVGACTHHAHACGAEVGIFLRIRDCQVVYLGRGKG CFVQPPYLDEYGETDQGLRRGNPLRLCQAAYSRIFLQWLGHGLHEEIARLNDNTNVAV TQWHHM" misc_feature 739..945 /gene="Ubr1" /note="UBR-box found in ubiquitin-protein ligases, E3-alpha-1 (UBR1), E3-alpha-2 (UBR2), and similar proteins; Region: UBR-box_UBR1_like; cd19672" /db_xref="CDD:439070" misc_feature order(742..744,781..783,790..792,817..819,826..828, 844..846,853..855,892..894,898..900,934..936,943..945) /gene="Ubr1" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:439070" misc_feature 1123..1314 /gene="Ubr1" /note="ATP-dependent Clp protease adaptor protein ClpS; Region: ClpS; pfam02617" /db_xref="CDD:460621" misc_feature 3955..4131 /gene="Ubr1" /note="RING finger, H2 subclass, found in ubiquitin-protein ligase E3-alpha-1 (UBR1), E3-alpha-2 (UBR2), and similar proteins; Region: RING-H2_UBR1-like; cd16482" /db_xref="CDD:438145" misc_feature 4483..5889 /gene="Ubr1" /note="Proteolysis_6 C-terminal; Region: PRT6_C; pfam18995" /db_xref="CDD:465944" polyA_site 7078 /gene="Ubr1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcagttccac catcgcaacg ccgttcacat gcgcgcgcat ggcttcggag tgcttcttct 61 tcctattgtt cattacgaaa ttgtaaagtt aaatagcaga caaatttgcg ttctgccagt 121 ataaatagct agatataaac aaagaaattt tgtaaattac tagtgaattc cccaagagcc 181 atacggaaga gcgaaaattt ttcatagcaa catttaggca aataagtaac acaacaaatg 241 caacaacaac aacaagcaca acagcaagac cagcaacagc aacaacaaca agtaccagaa 301 ccacaggaat aacaaggaca aggacacaac aaaacaagac acccacgcgc ggaggccaga 361 aagagacggc agcacaggag ccacagcgag tgcgagagag cgagagcgag agcaacgatg 421 gatcgctacg acatggagga cgttgtggtg gcgccacctg cagagtgcag ttcgccgctc 481 aaggagtggc gcctcaagcg ccaggcgggc acactagccc ggtccgattt tatcgaattc 541 tttaagcgcg agtcgcccaa gtactttgat taccagacgg gcggtacgga gacagatacc 601 aatgcgctta ctctcaagtg catgttcaag gaggcgctgg ccaaggagga gatcatcgat 661 gtcctggtcg agttcatgct gggcgacaat cccgcctccg cactggagaa gctccggctg 721 gagggcaaca cggccaccgt ttgcggcaag gtcttcaaga acggtgagcc cacctacagt 781 tgccgcgagt gcggcgtcga tcccacctgc gtgctctgcg tcaattgctt caagcgctcg 841 gcgcatcgct tccacaagta caagatgtcc acctccggcg gcggcggttg ctgcgactgc 901 ggcgacgacg aggcctggaa gaaggatcac tactgtcagc tgcatctggc aaatcgcaag 961 aatccgctgg agagcaagat cctaaccgac gccgtgctcg agcgcgccga gatctgcttt 1021 ggtgcgatcc tggccttctg cgtcaactac ctggagatcg agccgaacgc cagtctgcag 1081 tgcctcgacg ggaatgtcga aggcggccag gtggatgggg cgcagtactg cacggtgctc 1141 tacaacgacg agtcgcacac gttcgatcag gtcatccaga cgctgaccaa gatcgccaag 1201 tgcaagcaca aggacgccat ggagattgtg gcggcgatcg atcgcgaggg acgggcggtg 1261 gtcaagtgcg atacctttaa ggagtgcaac gacctgaaaa cagccatcga gaatcaaatg 1321 atcccggcga ccgcgctgct gacgaatccg cgcaacaacc agtcgctaag gacatcggtg 1381 ctgcacattg gggccgtggc ctgccagcag tttgccctgc agctgctcgg ctggttccag 1441 gagttcctgg tgcgccacta cctcttccgc aagaccttcg ccgagctggt gcagcgcaag 1501 caggaggcct tctgcatccg ccacatactc gagtacgacg tgaagctgtg gaagacggcg 1561 cgcacctgct ggcaccgcct cctcatctcc ggcatgctga tggagtacga caacaagatg 1621 gtgctggccc aggagttctc gcgtcgctac gccaccattg tcgaggactt tatcagcgac 1681 gatcacgacc atgccttctc gattgtctcg ctcagcgttc agctgttcac ggtgcccagc 1741 attgcccatc atctgatcgc ccacgagggc atcttcgaca agctgctgca caccttctac 1801 cacgtggcca tcgagaagtt catacagaac aagacgctgc actttagcaa gaacatcgcc 1861 agtttgacct tcttcaagcg ggccaactac atcctgtacg atctgcgcta tctgctcagt 1921 ttgaagccgg agctgctgaa caacgatctg cgcagcggat tcctagaagg ctgccgtgcg 1981 ctgatgcgcg tgctaaacgt tatgcagggc atggagtcga tcacgcggca gacgggccag 2041 cacatggact acgagccgga gtgggagtgc gccttcaatc tgcacatcaa gctggccacc 2101 accatttcgc aggtgatcga gtgggcggcc ggggatgtga agctgctgcg caagctgtac 2161 aagatgacgg tgcgagcgct ggtgagcaac agcttcattg tgggtggcga gaagaccgaa 2221 acgcgcagtg tcgctggcca tgtggccaac tgtttgatgt acgatgtgtc ggttaagccg 2281 gtatcgattc atttgccgct gtcgcgcttc tatgccggca tctatctgca tctgggcgcc 2341 cacgagatga cctacgacag cctgcagacc gaaacggagg cgctgagcat caagctgacg 2401 cccagggaga ttatcgagcc ggtgctgtgc acgcatgcga tgatcgccca ggtggccgcc 2461 ggaatgtggc gtcgcaatgg ctactcgctg ctgcaccagc tctacttcta tcgcaacgtt 2521 cgctgccgcg tcgagatgct ggacagggat attgtttgcc tgcaaattgg cgcctcgctg 2581 atggagagca acgagtttct gattcatgtg ctcaacaaat tcaatctgat tgcctgggcg 2641 caggccacgt acgaaacgat gctggccgag agtccggtgg acgatgagtt catgcgacag 2701 ctgtcgatga ttgacgagtt cctcgagctg ctgatcgtca tcatcggcga gcgttggatg 2761 ccgggcgtat cgatggtgac ggaggaggac cggctgcgca aggagatcat ccagctgctg 2821 tgcaccaaat cctattcgca ttcggagctg agtcgcgcgc tgccggacgg caatagcggg 2881 aatagcgaca acatattcga ggacgtcatc aacacggtgg ccgtcttcaa gaagcccgtg 2941 ggcgtcgagt ccaagggcgt ctacgagctg aaggagcatc tgttcgagga gttcaacgtg 3001 tacttctatc actacaccaa ggaggacaag tccaaggccg aggagctgca gcgggagcgg 3061 cgcaaggcca agaagcagct cgtctgctgc ccgccgccga tgctgccgca attgacgccg 3121 gcctttacat ccatggcgaa catactgcag tgcaacgtgt tcctcagcat ctgcactttg 3181 gtcatggaac gggccttgga cgcacgcagt cgctccttca ccgaatcgca tctccagaag 3241 atcctccacc tgctgggctt cgccatccag gaggagctga gcgagcacta tcccttcttg 3301 agcttctacg agcgctccca gcactacgga atcctcgaga agctggacga tctcgcccgc 3361 tgtcccaggt tggaggctca tcgcgacttt gtcgtgtgga ccatcaagcg gtacaaggag 3421 ctgcaggcca agcaggcgcc cagcgactcc cagcccagtg gctcccagca atgcagcggc 3481 ggcggcggag cctcggagga gcagccgctc agctccgagg agcaggcgcg ccaggagaag 3541 gagatacgcg cccgtttggc ggccgagcgg cgggccaaga tcatggctca gatgcagagt 3601 gcccagaagt cgttcatgaa gagcaatgcc gagatgtttg cggccagtga gaaggagaca 3661 agtggtagta cgggtgccat ggagtgggag gatatacccg ccgagggtga ggaggcggcg 3721 caggatgatg gacaggagca ggaacaggga gcggtggccc tcaggcccac ggtggtggcc 3781 tgtctggggc cggagcgcaa aatctaccag ggcagcgagg cgaacttcaa gtgcattttg 3841 tgcttcgaga actgcgccat cagccgcagc ggtccgccgt tggtcagctc cgcctttgtc 3901 cagacctcgc gggtgatctt caccacgcca aatatgcgcg cagggccgag cgccctgcac 3961 atgagctgct gcggccatgt gatgcaccac agctgctggc aggagtacta cagcaacgag 4021 gagtccaagg agcagcggcg tccgcaccgc aatcgcgtgg ccctcagcca ggcgcacaac 4081 gtcgagttcc actgtccgta ttgccggacg ctgagcaaca ccgtgctccc ggtgaccgag 4141 gcgctgcccg ccttctcgcc agctccctcg gccagcgata gctatctgcc gctggacagc 4201 ttcgtcgaga tcatgcgcac tttggccgcc gatttgggcg ccatgaggga cgaggagatg 4261 tgccagtttc ccagcgtcgc cggcattttg cgtaaatccg gcgtggttgg cgacatggcg 4321 cagttcgagc ggagcgttca gctcatccgg gatccgccca agctgcacgc caactacagc 4381 gatgtgatgg ccttcctcag caaggcgctg ctaaatgccc ggcagagcca gcagtcgcat 4441 ctgaaggagc agcaaggaac cagcactgga acagccaccc tagatcccga tagcatcgag 4501 ctggtgccgc tgctctggga cacatgcagc tacacgctgc aggcgctcga gatctatctg 4561 ttcgaggtgc agaagccgct gaaggccgaa ctccctatgc gccaccagag ctgcgccatc 4621 aatctggtgc gcgcctgctc ccgcttcgcc gcctcgcgct gcaactttga actggagctg 4681 ggcgagattc cgttgtcgcc gtcgctgcgc ctgcaggcgg agtactccgc ccggctgctg 4741 aacgagatct tcaaccagaa gggcagcagt gtgctcgagt gggactgctt ccgcaagctg 4801 gtgccgctgc agtttggcgt cctcaatctg atgaccgccg agagtgccaa ccaaaccgtc 4861 atacccagcg gcagcatgtt cgacttctac atcctgcaga ccatgttcct ggcccagctg 4921 accaaggcgg tcctctgctt cgatgtggac cgggagcagg ccaagcggcc aggccatgcc 4981 gagctcacgc aactggccta cgtggagcag ctgccggcca ggatccgtga caatatggtg 5041 gccttctatc gccgctacaa cattgcggcc agagtgctgc aggcgagcaa gcagaagcag 5101 ctggccgagg agcagcagaa ggaaggagat caacagcagc agcagacgac tgttgtcata 5161 ccctgcgaac cgcatcactt ggccctgctg ctcgagtacg tgcagcgtca gatgagctcc 5221 ttcctgcgct gcgcctgcct cttctaccgc tgcctcaccg acatcgactt cccggacacg 5281 tttcccactg accagccgga tcgcttcgag ctaatgtgcc agtatttggg cctcgagccc 5341 cagctgggcg tgtactttga catggagacg gtgtacgcca cgatgatgca ctcgttcgcc 5401 tcgcatccgc acattggacg cgaaatagag cagcgcggcc agccggagga ggtgcgtcgc 5461 tgcctccaac tggagccctg cctgcgaccg ctgccgcgtt tgaagccgct gtacgacgac 5521 tacagcgatc tgatcaacag cgtgtcggac atcttctgcc cgaacaacga gcgcgaggag 5581 atgaagacgc cgacaatgtg tctgatctgc ggctcgatcc tctgcggcca gtcgtactgc 5641 tgccagccgg agctgggcaa gatgtcggtg ggcgcgtgca cacatcatgc gcacgcctgc 5701 ggcgcggagg tgggtatctt cctgcgcatc cgcgactgcc aggtggtcta tctgggcagg 5761 ggcaagggct gcttcgtcca gccgccgtat ctcgatgagt acggcgaaac ggatcagggg 5821 ctgaggcgcg gcaatccgct gagactctgc caggcggcct acagcaggat cttcctgcag 5881 tggctcggcc atgggctgca cgaggagatc gcccggctga acgacaacac caatgtggcg 5941 gtgacgcagt ggcatcacat gtagtcctgc gcagacgatg atcatgatga cgattacagt 6001 tacgataaag gagcaggcgg cggcggcggc ggcagtcaat gtgattatta catactaaca 6061 ttaggagagc ctatttatac gtctaagcat tttactactt gtccgttttg gaagaagcgc 6121 ccactcatcc aacatcaaac atccaacacc atccacaaac cacgaacacg ccaccatcac 6181 caccaccaaa tcctgtccag cagcggcccc caatcgacaa ttgcaacgat tgtccaactt 6241 tcttcttatt aattaatatt aattcattaa aatattatta tgattttttt tttgaactaa 6301 ccttagaata cttgttgata gtttgagcgg ctcagcgccc tcctctagtt atatatatat 6361 atataatatc atatgctaaa tatataacga ctaggttaga cttttgccca gcacttcaaa 6421 tgtcgcagca gctgaaggaa gcaaagctac gttgaaataa aagcaacaaa atatgcaagt 6481 cctgctctct ctctatcttt tgtctcgctc gcgcggcccc actcgatgta tatatagtcc 6541 cgatctttga gtgccgatga tcctaaccat gttgaggtcc tatttttggc gtttgttgat 6601 ttgtacattt agttagtgta aaaatattga taccgcttaa gagtataccc gaaatttgtt 6661 gtcccccctt caagcagaag tttagattcg tagtcgcccg accaatccac ttatccatag 6721 cccacacaat cgccctctct tccagagccc cccgcttttc taccccatct caatccaacc 6781 caaggaacgc agttaaaata gtcatcatgt ttacttgatc aatatactta acaccctata 6841 cgactatata tttacatatt aacaagcgta tatatatata tattatagat acataacacg 6901 catatttctt tttatgtatt gtacaacaaa caacaaaatc gactatgtat gtgaagttct 6961 agcaaaaagc aaaaaataaa tgttcttgaa aaagtaaatc ttcaaaatga aacagcaaaa 7021 aaaaagaaac aacagaaata aaatgcaaag tttgcaaaat tttagtgata ttcaagaa