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LOCUS XM_017146771 1955 bp mRNA linear INV 09-DEC-2024 (LOC108060862), mRNA. ACCESSION XM_017146771 VERSION XM_017146771.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146771.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1955 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1955 /gene="LOC108060862" /note="transcription factor grauzone; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108060862" CDS 130..1905 /gene="LOC108060862" /codon_start=1 /product="transcription factor grauzone" /protein_id="XP_017002260.2" /db_xref="GeneID:108060862" /translation="MICRLCLRCLSPGSAVFLFETDDTLAETRLVKMIAKFLQLEILP DDGISTSVCTDCCEHLEDFNGFWQLVEQKQCSLKKEFLTVDVDCVAMKWTGGVDVDVN IDELPLAAGDMDEKPLDLHNLSLLGSVLDVNVDSVEVREPGQVKEQLPCGSEEEEQDK KPRLLASDSEPEAMQPEEDSSDDEPLVRLQTKMRPKPPKRKAKVRTNKAESAHSLHRE LEDLLDDGSKRRRRRATGGTAEQRAPTEVQESELQAVLERKPKGCSRAQLAKSYEEAI ASYMSASCDLCEFSAPYLSELKTHFLEAHQREFYIKCCGKIFTRASKLMDHIRKHVNP NLFTCSICQKSLNSQDYLATHIETVHNKVAQIDKVLKFPCPKCERTFSSERRLANHLA KHDTDQLEHTCEICCKSFANIHRLRRHIQSIHEDLHRHVCDICGKKFKFKPSFDRHLL EHQGVVAPAVECPVCGVWLKNEHSLRLHRFTHDSTDTVCPHCGKTCTSRTALRGHVKY AHKLTTNLQCTFCEKTFKQQRNLDEHMAIHTGLQLYNCPHCPKECRSRSNMYVHIKQR HADEWLRAKMARSHNPQFKPGSGDV" misc_feature 133..366 /gene="LOC108060862" /note="Zinc-finger associated domain (zf-AD); Region: zf-AD; smart00868" /db_xref="CDD:214871" misc_feature 979..1044 /gene="LOC108060862" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1069..>1236 /gene="LOC108060862" /note="N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Region: SUF4-like; cd20908" /db_xref="CDD:411020" misc_feature 1069..1122 /gene="LOC108060862" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 1069..1122 /gene="LOC108060862" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1075..1077,1093..1095,1114..1116,1117..1119, 1141..1143,1162..1164) /gene="LOC108060862" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:411020" misc_feature 1144..1209 /gene="LOC108060862" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 1144..1209 /gene="LOC108060862" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1249..1311 /gene="LOC108060862" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1264..1266,1270..1272,1276..1278,1282..1287, 1294..1299,1306..1308,1351..1353,1357..1359,1369..1374, 1381..1386,1396..1398,1438..1440,1444..1446,1450..1452, 1456..1461,1468..1473,1480..1482) /gene="LOC108060862" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1336..1401 /gene="LOC108060862" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1423..1485 /gene="LOC108060862" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1513..1575 /gene="LOC108060862" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1594..1659 /gene="LOC108060862" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1609..1611,1615..1617,1621..1623,1627..1632, 1639..1644,1654..1656,1696..1698,1702..1704,1714..1719, 1726..1731,1738..1740,1780..1782,1786..1788,1792..1794, 1798..1803,1810..1815) /gene="LOC108060862" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1681..1743 /gene="LOC108060862" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1765..1821 /gene="LOC108060862" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 1955 /gene="LOC108060862" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gaatcccacc acacctgacg gggagttttg ccatccctaa ttgaaatgtt gttgtttaca 61 gcgcagcagc aacgaaaatt tgtttaaaca tattatttag ccagtttgcg cagtgatttc 121 ccaggcataa tgatttgtcg actgtgcctg cggtgcctca gtcccggtag cgccgtcttc 181 ctcttcgaga cggacgatac gctggcggag acgcggctgg tgaagatgat cgccaagttt 241 ctgcagctgg agatcctgcc cgacgacggc atctcgacca gcgtctgcac cgactgctgc 301 gagcatctgg aggacttcaa cggcttctgg cagctggtgg agcagaagca gtgctcgctg 361 aagaaggagt tcctcactgt ggacgtcgat tgcgtggcga tgaagtggac gggcggcgtc 421 gacgtggacg tcaacatcga tgagctgccg ctggcggcgg gcgacatgga cgagaaaccg 481 ctggacctgc acaatctcag cctactgggc agcgtcctag acgtgaatgt ggacagtgtg 541 gaggtgaggg agccgggcca ggtgaaggag cagctgccct gcggctccga ggaggaggag 601 caggacaaga agccccgcct gctggccagt gatagcgagc cggaggcgat gcagccagaa 661 gaagattcct cggatgatga gcccctggtg cggctgcaga ccaagatgcg gcccaagccg 721 cccaagcgca aggccaaggt gcgcacgaac aaggcggaga gcgcacattc cctgcaccgc 781 gaactggagg atctgctgga cgacggcagc aagcggcgaa ggagaagggc gactggagga 841 acagcggagc agcgtgcgcc caccgaggtg caggagtccg aactgcaggc cgtgctcgag 901 cgcaaaccga agggctgctc ccgcgcccag ctggccaaaa gctacgagga ggccatcgcc 961 agctacatga gcgccagctg cgatctgtgc gagtttagtg ctccctacct ctccgagctg 1021 aagacgcact tcctggaggc gcatcagcga gagttttaca tcaagtgctg cggcaagatc 1081 ttcacgcgag cctccaaact tatggatcac atccgcaagc atgtcaatcc caatctattt 1141 acctgctcca tttgccagaa gtcgctcaac tcgcaggact atttggccac ccacattgag 1201 acggtgcaca acaaggtcgc tcagatcgac aaggtgctca agttcccctg ccccaagtgc 1261 gagcgcacct tcagcagcga gcgccggttg gccaatcacc tggccaagca cgacaccgac 1321 cagttggagc acacctgcga gatctgctgc aagagctttg ccaacatcca caggctgcga 1381 cgccacatcc aatccatcca cgaggacctg caccgccacg tctgcgacat ctgcggcaag 1441 aagttcaagt tcaagccctc cttcgatcgc cacctgctgg agcaccaggg cgtggtggcg 1501 ccggccgtcg agtgcccggt gtgcggcgtc tggctgaaga acgagcacag tttgcggctg 1561 caccgcttca cgcacgacag cacggacacc gtgtgcccgc actgcggcaa gacctgcacc 1621 tcgcgcacag ctcttcgcgg tcatgtgaag tacgcccaca agctgaccac caatctgcag 1681 tgcaccttct gcgagaagac cttcaagcag cagcgcaacc tggacgagca catggccata 1741 cacacgggcc tgcagctgta caactgtccg cattgcccga aggaatgccg ctcgcgttct 1801 aatatgtacg tgcacatcaa gcagcggcac gcggacgagt ggctaagggc caaaatggcc 1861 cgttcgcaca atccccagtt caagccggga tccggcgacg tttaaacctg atcctgcaca 1921 aatatgttta accattacac gtataattaa ctaaa