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LOCUS XM_017145976 2835 bp mRNA linear INV 09-DEC-2024 variant X4, mRNA. ACCESSION XM_017145976 VERSION XM_017145976.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017145976.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2835 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2835 /gene="Top1" /note="topoisomerase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108060319" CDS 16..1842 /gene="Top1" /codon_start=1 /product="DNA topoisomerase 1 isoform X4" /protein_id="XP_017001465.2" /db_xref="GeneID:108060319" /translation="MLRPLAAVRLFGDRSACWVFGEQIVATVATVAGKKRRVRRKSVQ EEQIRWWEEEKRADGVKWTTLEHKGPVFAPPYERVPRNVRFYYDGKPLELSEETEEAA TFYAKMLNHDYCTKDVFNNNFFKDFRKSMTSKEKEIIKDFRKCNFQEMFNFFQAESEK RKAATKEEKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMI KRRIQSSDVSINCGKDSKVPSPPYGSRWKEVRHDNTVTWLASWIENVQGQVKYIMLNP SSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRA GNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVEKRVF KNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMDGLTAKVFRTYNASKTLQSQLDLLT DPGATVPEKLLAYNRANRAVAILCNHQRSVPKGHEKSMENLKEKIKTKRDAIDDCEAE YHDLKKAAKRGSVKEKVNADKKGKQLERLKDQLKKLELQETDRDENKTIALGTSKLNY LDPRISVAWCKKNGVPIEKIFNKTQRTKFLWAIHMADEHYRF" misc_feature 196..840 /gene="Top1" /note="Topoisomer_IB_N_htopoI_like : N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic); Region: Topoisomer_IB_N_htopoI_like; cd03488" /db_xref="CDD:239570" misc_feature order(196..198,346..348,616..621,634..636,640..642, 649..651,670..672,778..786,823..828,832..834) /gene="Top1" /note="DNA binding site" /db_xref="CDD:239570" misc_feature 628..1749 /gene="Top1" /note="DNA Topoisomerase I (eukaryota); Region: TOPEUc; smart00435" /db_xref="CDD:214661" misc_feature 640..642 /gene="Top1" /note="topo1 poison binding [active]" /db_xref="CDD:239570" polyA_site 2835 /gene="Top1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcgtacacat atattatgtt gcgccccttg gcggcagtac gtctattcgg agatcggagt 61 gcttgctggg ttttcgggga gcagatcgta gccaccgtag ccaccgttgc gggcaaaaag 121 agaagagtgc gacggaagag cgtccaggaa gagcaaattc gatggtggga ggaggagaag 181 cgcgcagatg gcgtcaagtg gacaacgctg gagcacaagg gacccgtttt cgcaccgccc 241 tacgagcggg tgccccgcaa tgtgcggttc tactacgacg gcaagccact ggaactctcc 301 gaggagacgg aggaggcggc caccttctat gcgaagatgt tgaatcatga ctactgcacc 361 aaggatgtgt tcaacaacaa cttcttcaag gacttccgca agtcgatgac gtccaaggag 421 aaggagatca tcaaggattt ccgcaagtgc aacttccagg agatgttcaa cttcttccag 481 gcggagtccg agaagcgcaa ggcggccacc aaggaggaga agctgatcaa gaagaacgag 541 aacgaggcgc tgatgaagga gtttggcttc tgtatgatcg acggccacaa ggagaagatt 601 ggcaactttc gcctggagcc tcccggcctt ttccgtggcc gtggcgagca tcccaaaatg 661 ggcatgatca agcgtcgcat tcagtccagc gatgtgtcca ttaactgcgg caaggactcc 721 aaggtcccct cgcccccata cggatcgcgg tggaaggagg tgcgccacga caacacggtc 781 acctggctgg cctcctggat cgagaacgtg cagggccagg tcaagtacat catgctgaat 841 ccctcctcga agctcaaggg cgagaaggat cacattaagt acgagacggc acggcgactg 901 gacaaggtga tcgacaagat tcgggccacc tatcgcgacg aatggaagtc gaaggagatg 961 cgagtgcgcc agcgggcggt tgccctctac tttatcgaca agctggcgct gagagcgggc 1021 aacgaaaagg acgaggatca ggcggacacc gtcggctgtt gctcgctgcg cgtcgagcac 1081 gtccagctgc acaaggagct caacggcaag gagaacgtgg tggtgttcga cttccccggt 1141 aaggattcca ttcgctacta caacgaggtc gaggtggaga agcgcgtctt caagaacctc 1201 gagctgttta tggagcacaa gaaggagggc gacgatctct tcgatcgcct caacactcag 1261 gtgctcaacg agcatctcaa ggagctgatg gatggactca cggccaaggt attccgtacg 1321 tacaacgctt cgaaaacact gcaaagccag ctggatctgc tcaccgatcc gggtgccacg 1381 gtaccggaga agctcttggc ctacaatcgg gccaatcgcg ccgtggccat cctgtgtaac 1441 catcagcgtt ccgtgcccaa gggccacgag aagtcgatgg agaatctgaa ggagaagatc 1501 aagaccaagc gggatgccat cgatgattgc gaggctgaat atcatgattt aaagaaggcc 1561 gccaaacggg gatccgtgaa ggagaaggtc aatgccgaca agaagggcaa acagctggag 1621 cgcctgaagg atcagctgaa gaaactagaa ttacaagaga ctgatagaga cgagaataag 1681 accattgccc tgggcacatc taagctaaac tatctcgatc cacgcatatc ggtggcttgg 1741 tgtaaaaaga acggagtgcc gatcgagaag atatttaaca aaacgcaaag aaccaaattt 1801 ctgtgggcca ttcacatggc cgatgagcat tatcgttttt aaattgggtt gttatcctca 1861 caggcacgcc cacccacaca cacagatacg cccccctctc acacacacaa agaagcatag 1921 acagcgcagg ttgaaagact aggaacccga agacactttg ccccgaaaag tttatgcaaa 1981 cagtagtgca tatgttcagc ttttcggttt tcggtaaagg catttcggga tgattatact 2041 gctcctcccc cagaaaagaa agggacggat gtattctagg gatagggatc tggatctgcg 2101 tctgttttgt ctgctttgga aaaacaaaaa cgtttgattg tttcaagtgc gcgcactacg 2161 ctgaagtcta acttgcgaaa tgtacacacc aaaaacatgc cacacacgcg ttcacacttc 2221 tatattgata tatatatatg gatatatata ttttaaacac aatatatata tatatatatt 2281 atatacgaga caacaattta aataaacacc aagagaagaa gagaaacctg tgcaagacgt 2341 cgccgccacc taaaaacaaa ataagagcat aattttctat gttttaccgt ctacaaaaga 2401 agcaacaaat tttttctttt ttttttgtcg tcaaaactct gctgacttct cttatatatt 2461 tttaattaat taatttttat atataaacta taaacaaaaa agaaagagaa agaaagtaaa 2521 agctaaaaaa aaaaggaaaa gaacctacaa gcaaacgaaa aatgataaaa ttaacggttt 2581 ttttatgttt acctatagtt gatttttgtt tagcgaaaaa atgtctttca ctattaatta 2641 atattaatta tacaattact acgattacgt atttaagtgc taaatgaaca gagaaacctt 2701 gtagcccaac ttttttagca tagcataatt tattcaattc aaaaaaactc tgatccagcg 2761 caatttaccc aacacgattt atgattttag ttaaaattaa aaaataaacg aatgctaaat 2821 tcatttgcaa acaaa