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LOCUS XM_017145974 4612 bp mRNA linear INV 09-DEC-2024 variant X3, mRNA. ACCESSION XM_017145974 VERSION XM_017145974.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017145974.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4612 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4612 /gene="Top1" /note="topoisomerase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108060319" CDS 596..3619 /gene="Top1" /codon_start=1 /product="DNA topoisomerase 1 isoform X3" /protein_id="XP_017001463.2" /db_xref="GeneID:108060319" /translation="MTDAQNIHIQNGGSCGEVVQSNGVTTNGHGHHHHHSSSGSSGSS KHKSSSKDKHRDKDREHKSSGSSSSSKDHKSSSRDKDRHKSSSSSSSSSKHRDKDKDK EHRSSSSSSHRDKDGSSSSSSSKHKSSSSSSSSSGHHKSSSKDKERRDKDKDRSSSSS SSSSSRHKSSSSSSSSRDKERSSSSSHKSSSSSSSSSSKSKHSSSRHSSSQSSSSKEP PSYDGVFVKPEPVSQPLMQQQQEHSGPIDPFHMQQLINCNGNGNGNDYKNGYEESIVD IKKEDESFNNLSQASSCDYSMSQFRADEPAFEVKHEQSYAEEDSTMNDNDQDEEADNE PEEMDNDNEEEDDDEEDVPLAMRKRKQEAPDQADGGMDDDDDDIPLLARKKVKKEPKE KSKKNKRVKEEPDDEYGSVKPKKKKIKKEHEIKTEVVSSSPTKRQKVKEEEEEVWRWW EEEKRADGVKWTTLEHKGPVFAPPYERVPRNVRFYYDGKPLELSEETEEAATFYAKML NHDYCTKDVFNNNFFKDFRKSMTSKEKEIIKDFRKCNFQEMFNFFQAESEKRKAATKE EKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQSS DVSINCGKDSKVPSPPYGSRWKEVRHDNTVTWLASWIENVQGQVKYIMLNPSSKLKGE KDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDED QADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFM EHKKEGDDLFDRLNTQVLNEHLKELMDGLTAKVFRTYNASKTLQSQLDLLTDPGATVP EKLLAYNRANRAVAILCNHQRSVPKGHEKSMENLKEKIKTKRDAIDDCEAEYHDLKKA AKRGSVKEKVNADKKGKQLERLKDQLKKLELQETDRDENKTIALGTSKLNYLDPRISV AWCKKNGVPIEKIFNKTQRTKFLWAIHMADEHYRF" misc_feature 1973..2617 /gene="Top1" /note="Topoisomer_IB_N_htopoI_like : N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic); Region: Topoisomer_IB_N_htopoI_like; cd03488" /db_xref="CDD:239570" misc_feature order(1973..1975,2123..2125,2393..2398,2411..2413, 2417..2419,2426..2428,2447..2449,2555..2563,2600..2605, 2609..2611) /gene="Top1" /note="DNA binding site" /db_xref="CDD:239570" misc_feature 2405..3526 /gene="Top1" /note="DNA Topoisomerase I (eukaryota); Region: TOPEUc; smart00435" /db_xref="CDD:214661" misc_feature 2417..2419 /gene="Top1" /note="topo1 poison binding [active]" /db_xref="CDD:239570" polyA_site 4612 /gene="Top1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aagtgtccca gtcccatttt gcaattacat ttatatgtgc acatacaaac gtacagaggt 61 gttttttttt tttgtatatg cttgtgtgtc gtctgataag acagatgtgc caccccgaaa 121 aaaaaacaca cttactaaat aatatgctgc aacaacaaca accccgtgtg tgtgtgtgca 181 agtgtgtgcg tgtgtagcct tgatgcagcg cccacgttga aaaaaaagaa gaatatatgc 241 agttaaaaaa aaaaatacga ttttctgtat tctccaattt gcgcgtgtgt gtgcgtgtgt 301 gttccattgt ttggcagcgg tgtttttgta tttccatttc atttaaccta ttcttccaac 361 gggaagaata tcgggaacga tatttccaat ttcctgtcgc catcgctctt cggctcctct 421 tcttcttcct gctcatcgca tttaacccat tgctgcccgt ttcaagtgaa ttttcctacg 481 cggcatttgt gttagggttg atttttcacc acgtggtgag cggatagaca cgagataatc 541 atagtaaatc catcaaaagg cccaggaaat cgtgaggaag cgaacgagag aagctatgac 601 ggatgcacag aacatccaca tacaaaatgg tggcagctgc ggcgaggtgg ttcaatccaa 661 cggggtgacc accaacggac acggacacca ccaccaccac agcagcagtg ggagcagcgg 721 gagcagcaag cataaatcct ccagcaagga caagcaccgt gataaggaca gggagcacaa 781 gagctccgga tcctccagct cgtcgaagga tcacaagagc agcagtcgcg acaaggatcg 841 ccacaaaagc agcagcagca gcagctcgtc gtcgaagcat cgggacaagg acaaggacaa 901 ggagcatcgc agcagctctt cgtctagcca cagggacaag gatgggagca gcagcagtag 961 cagcagcaag cacaagtcct cgtcgtcatc atcgtcctcg tccggccacc acaagagctc 1021 ctcgaaggac aaggagcgac gcgacaagga caaggatcgc agcagcagca gcagcagcag 1081 ctcctccagc cggcacaagt catcctcatc ctcgtccagt tcccgtgata aggagcgcag 1141 cagcagcagc agtcacaaga gctcctcctc atcgtcatcc tcgtcatcga agagcaaaca 1201 ttccagttcg cggcacagca gctcgcagtc ctcctcctcg aaggagccgc catcgtacga 1261 tggagtgttt gtcaagccgg agcccgtttc gcagccgctg atgcagcagc agcaggagca 1321 ctctggcccc atcgatccct tccacatgca gcagctcatc aattgcaatg gcaatggcaa 1381 tggcaacgac tacaagaacg gctacgagga atcgattgtg gacatcaaga aggaggacga 1441 gagcttcaac aatctatcgc aggcgagctc ctgcgactac tccatgtccc agtttcgagc 1501 cgatgagccg gcattcgagg tgaagcacga gcagagctac gccgaggagg atagcaccat 1561 gaacgacaat gatcaggacg aggaggctga taacgaaccc gaggaaatgg acaacgacaa 1621 cgaggaggag gacgacgatg aggaggatgt gccgctggcc atgcgtaagc gcaagcagga 1681 ggcacccgat caggccgatg gcggcatgga tgacgacgac gacgacattc cgctgctggc 1741 gcgcaagaag gtcaagaagg agcccaagga gaagtcgaag aagaacaagc gggtcaagga 1801 ggagcccgac gacgagtacg gcagtgttaa gcccaagaag aaaaagatca aaaaggaaca 1861 cgaaattaag accgaggtcg tatcatcatc gcccaccaaa cgtcagaagg tcaaggagga 1921 ggaggaggag gtgtggagat ggtgggagga ggagaagcgc gcagatggcg tcaagtggac 1981 aacgctggag cacaagggac ccgttttcgc accgccctac gagcgggtgc cccgcaatgt 2041 gcggttctac tacgacggca agccactgga actctccgag gagacggagg aggcggccac 2101 cttctatgcg aagatgttga atcatgacta ctgcaccaag gatgtgttca acaacaactt 2161 cttcaaggac ttccgcaagt cgatgacgtc caaggagaag gagatcatca aggatttccg 2221 caagtgcaac ttccaggaga tgttcaactt cttccaggcg gagtccgaga agcgcaaggc 2281 ggccaccaag gaggagaagc tgatcaagaa gaacgagaac gaggcgctga tgaaggagtt 2341 tggcttctgt atgatcgacg gccacaagga gaagattggc aactttcgcc tggagcctcc 2401 cggccttttc cgtggccgtg gcgagcatcc caaaatgggc atgatcaagc gtcgcattca 2461 gtccagcgat gtgtccatta actgcggcaa ggactccaag gtcccctcgc ccccatacgg 2521 atcgcggtgg aaggaggtgc gccacgacaa cacggtcacc tggctggcct cctggatcga 2581 gaacgtgcag ggccaggtca agtacatcat gctgaatccc tcctcgaagc tcaagggcga 2641 gaaggatcac attaagtacg agacggcacg gcgactggac aaggtgatcg acaagattcg 2701 ggccacctat cgcgacgaat ggaagtcgaa ggagatgcga gtgcgccagc gggcggttgc 2761 cctctacttt atcgacaagc tggcgctgag agcgggcaac gaaaaggacg aggatcaggc 2821 ggacaccgtc ggctgttgct cgctgcgcgt cgagcacgtc cagctgcaca aggagctcaa 2881 cggcaaggag aacgtggtgg tgttcgactt ccccggtaag gattccattc gctactacaa 2941 cgaggtcgag gtggagaagc gcgtcttcaa gaacctcgag ctgtttatgg agcacaagaa 3001 ggagggcgac gatctcttcg atcgcctcaa cactcaggtg ctcaacgagc atctcaagga 3061 gctgatggat ggactcacgg ccaaggtatt ccgtacgtac aacgcttcga aaacactgca 3121 aagccagctg gatctgctca ccgatccggg tgccacggta ccggagaagc tcttggccta 3181 caatcgggcc aatcgcgccg tggccatcct gtgtaaccat cagcgttccg tgcccaaggg 3241 ccacgagaag tcgatggaga atctgaagga gaagatcaag accaagcggg atgccatcga 3301 tgattgcgag gctgaatatc atgatttaaa gaaggccgcc aaacggggat ccgtgaagga 3361 gaaggtcaat gccgacaaga agggcaaaca gctggagcgc ctgaaggatc agctgaagaa 3421 actagaatta caagagactg atagagacga gaataagacc attgccctgg gcacatctaa 3481 gctaaactat ctcgatccac gcatatcggt ggcttggtgt aaaaagaacg gagtgccgat 3541 cgagaagata tttaacaaaa cgcaaagaac caaatttctg tgggccattc acatggccga 3601 tgagcattat cgtttttaaa ttgggttgtt atcctcacag gcacgcccac ccacacacac 3661 agatacgccc ccctctcaca cacacaaaga agcatagaca gcgcaggttg aaagactagg 3721 aacccgaaga cactttgccc cgaaaagttt atgcaaacag tagtgcatat gttcagcttt 3781 tcggttttcg gtaaaggcat ttcgggatga ttatactgct cctcccccag aaaagaaagg 3841 gacggatgta ttctagggat agggatctgg atctgcgtct gttttgtctg ctttggaaaa 3901 acaaaaacgt ttgattgttt caagtgcgcg cactacgctg aagtctaact tgcgaaatgt 3961 acacaccaaa aacatgccac acacgcgttc acacttctat attgatatat atatatggat 4021 atatatattt taaacacaat atatatatat atatattata tacgagacaa caatttaaat 4081 aaacaccaag agaagaagag aaacctgtgc aagacgtcgc cgccacctaa aaacaaaata 4141 agagcataat tttctatgtt ttaccgtcta caaaagaagc aacaaatttt ttcttttttt 4201 tttgtcgtca aaactctgct gacttctctt atatattttt aattaattaa tttttatata 4261 taaactataa acaaaaaaga aagagaaaga aagtaaaagc taaaaaaaaa aggaaaagaa 4321 cctacaagca aacgaaaaat gataaaatta acggtttttt tatgtttacc tatagttgat 4381 ttttgtttag cgaaaaaatg tctttcacta ttaattaata ttaattatac aattactacg 4441 attacgtatt taagtgctaa atgaacagag aaaccttgta gcccaacttt tttagcatag 4501 cataatttat tcaattcaaa aaaactctga tccagcgcaa tttacccaac acgatttatg 4561 attttagtta aaattaaaaa ataaacgaat gctaaattca tttgcaaaca aa