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LOCUS XM_017145973 4351 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_017145973 VERSION XM_017145973.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017145973.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4351 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4351 /gene="Top1" /note="topoisomerase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108060319" CDS 323..3358 /gene="Top1" /codon_start=1 /product="DNA topoisomerase 1 isoform X2" /protein_id="XP_017001462.2" /db_xref="GeneID:108060319" /translation="MSGDVAAENNIHIQNGGSCGEVVQSNGVTTNGHGHHHHHSSSGS SGSSKHKSSSKDKHRDKDREHKSSGSSSSSKDHKSSSRDKDRHKSSSSSSSSSKHRDK DKDKEHRSSSSSSHRDKDGSSSSSSSKHKSSSSSSSSSGHHKSSSKDKERRDKDKDRS SSSSSSSSSRHKSSSSSSSSRDKERSSSSSHKSSSSSSSSSSKSKHSSSRHSSSQSSS SKEPPSYDGVFVKPEPVSQPLMQQQQEHSGPIDPFHMQQLINCNGNGNGNDYKNGYEE SIVDIKKEDESFNNLSQASSCDYSMSQFRADEPAFEVKHEQSYAEEDSTMNDNDQDEE ADNEPEEMDNDNEEEDDDEEDVPLAMRKRKQEAPDQADGGMDDDDDDIPLLARKKVKK EPKEKSKKNKRVKEEPDDEYGSVKPKKKKIKKEHEIKTEVVSSSPTKRQKVKEEEEEV WRWWEEEKRADGVKWTTLEHKGPVFAPPYERVPRNVRFYYDGKPLELSEETEEAATFY AKMLNHDYCTKDVFNNNFFKDFRKSMTSKEKEIIKDFRKCNFQEMFNFFQAESEKRKA ATKEEKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRR IQSSDVSINCGKDSKVPSPPYGSRWKEVRHDNTVTWLASWIENVQGQVKYIMLNPSSK LKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNE KDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVEKRVFKNL ELFMEHKKEGDDLFDRLNTQVLNEHLKELMDGLTAKVFRTYNASKTLQSQLDLLTDPG ATVPEKLLAYNRANRAVAILCNHQRSVPKGHEKSMENLKEKIKTKRDAIDDCEAEYHD LKKAAKRGSVKEKVNADKKGKQLERLKDQLKKLELQETDRDENKTIALGTSKLNYLDP RISVAWCKKNGVPIEKIFNKTQRTKFLWAIHMADEHYRF" misc_feature 1712..2356 /gene="Top1" /note="Topoisomer_IB_N_htopoI_like : N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic); Region: Topoisomer_IB_N_htopoI_like; cd03488" /db_xref="CDD:239570" misc_feature order(1712..1714,1862..1864,2132..2137,2150..2152, 2156..2158,2165..2167,2186..2188,2294..2302,2339..2344, 2348..2350) /gene="Top1" /note="DNA binding site" /db_xref="CDD:239570" misc_feature 2144..3265 /gene="Top1" /note="DNA Topoisomerase I (eukaryota); Region: TOPEUc; smart00435" /db_xref="CDD:214661" misc_feature 2156..2158 /gene="Top1" /note="topo1 poison binding [active]" /db_xref="CDD:239570" polyA_site 4351 /gene="Top1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cttgagtgaa aagcaaaaaa aagcaaaggg ttttcgattc gcgtggctgc tgcgcgctgt 61 gaaaagcaaa gaattgcatc gccagaagca ccaaacgctg ctccatttcg gaaacggaaa 121 gcggaaaacc ccagtgcgct cactttccaa ccgccgccgc cgcaagaact gctcagaaaa 181 tatagaatag caaagaaaaa aaaaacgaac tgaaagagtg aacaattttt taaccaagtg 241 cggatgcaga gagagtaaaa agtaaaaagt caaaggaccg acaagtagaa agaaaaataa 301 gaaaaacgcc gagcgccgca aaatgagtgg ggatgtggct gccgagaata acatccacat 361 acaaaatggt ggcagctgcg gcgaggtggt tcaatccaac ggggtgacca ccaacggaca 421 cggacaccac caccaccaca gcagcagtgg gagcagcggg agcagcaagc ataaatcctc 481 cagcaaggac aagcaccgtg ataaggacag ggagcacaag agctccggat cctccagctc 541 gtcgaaggat cacaagagca gcagtcgcga caaggatcgc cacaaaagca gcagcagcag 601 cagctcgtcg tcgaagcatc gggacaagga caaggacaag gagcatcgca gcagctcttc 661 gtctagccac agggacaagg atgggagcag cagcagtagc agcagcaagc acaagtcctc 721 gtcgtcatca tcgtcctcgt ccggccacca caagagctcc tcgaaggaca aggagcgacg 781 cgacaaggac aaggatcgca gcagcagcag cagcagcagc tcctccagcc ggcacaagtc 841 atcctcatcc tcgtccagtt cccgtgataa ggagcgcagc agcagcagca gtcacaagag 901 ctcctcctca tcgtcatcct cgtcatcgaa gagcaaacat tccagttcgc ggcacagcag 961 ctcgcagtcc tcctcctcga aggagccgcc atcgtacgat ggagtgtttg tcaagccgga 1021 gcccgtttcg cagccgctga tgcagcagca gcaggagcac tctggcccca tcgatccctt 1081 ccacatgcag cagctcatca attgcaatgg caatggcaat ggcaacgact acaagaacgg 1141 ctacgaggaa tcgattgtgg acatcaagaa ggaggacgag agcttcaaca atctatcgca 1201 ggcgagctcc tgcgactact ccatgtccca gtttcgagcc gatgagccgg cattcgaggt 1261 gaagcacgag cagagctacg ccgaggagga tagcaccatg aacgacaatg atcaggacga 1321 ggaggctgat aacgaacccg aggaaatgga caacgacaac gaggaggagg acgacgatga 1381 ggaggatgtg ccgctggcca tgcgtaagcg caagcaggag gcacccgatc aggccgatgg 1441 cggcatggat gacgacgacg acgacattcc gctgctggcg cgcaagaagg tcaagaagga 1501 gcccaaggag aagtcgaaga agaacaagcg ggtcaaggag gagcccgacg acgagtacgg 1561 cagtgttaag cccaagaaga aaaagatcaa aaaggaacac gaaattaaga ccgaggtcgt 1621 atcatcatcg cccaccaaac gtcagaaggt caaggaggag gaggaggagg tgtggagatg 1681 gtgggaggag gagaagcgcg cagatggcgt caagtggaca acgctggagc acaagggacc 1741 cgttttcgca ccgccctacg agcgggtgcc ccgcaatgtg cggttctact acgacggcaa 1801 gccactggaa ctctccgagg agacggagga ggcggccacc ttctatgcga agatgttgaa 1861 tcatgactac tgcaccaagg atgtgttcaa caacaacttc ttcaaggact tccgcaagtc 1921 gatgacgtcc aaggagaagg agatcatcaa ggatttccgc aagtgcaact tccaggagat 1981 gttcaacttc ttccaggcgg agtccgagaa gcgcaaggcg gccaccaagg aggagaagct 2041 gatcaagaag aacgagaacg aggcgctgat gaaggagttt ggcttctgta tgatcgacgg 2101 ccacaaggag aagattggca actttcgcct ggagcctccc ggccttttcc gtggccgtgg 2161 cgagcatccc aaaatgggca tgatcaagcg tcgcattcag tccagcgatg tgtccattaa 2221 ctgcggcaag gactccaagg tcccctcgcc cccatacgga tcgcggtgga aggaggtgcg 2281 ccacgacaac acggtcacct ggctggcctc ctggatcgag aacgtgcagg gccaggtcaa 2341 gtacatcatg ctgaatccct cctcgaagct caagggcgag aaggatcaca ttaagtacga 2401 gacggcacgg cgactggaca aggtgatcga caagattcgg gccacctatc gcgacgaatg 2461 gaagtcgaag gagatgcgag tgcgccagcg ggcggttgcc ctctacttta tcgacaagct 2521 ggcgctgaga gcgggcaacg aaaaggacga ggatcaggcg gacaccgtcg gctgttgctc 2581 gctgcgcgtc gagcacgtcc agctgcacaa ggagctcaac ggcaaggaga acgtggtggt 2641 gttcgacttc cccggtaagg attccattcg ctactacaac gaggtcgagg tggagaagcg 2701 cgtcttcaag aacctcgagc tgtttatgga gcacaagaag gagggcgacg atctcttcga 2761 tcgcctcaac actcaggtgc tcaacgagca tctcaaggag ctgatggatg gactcacggc 2821 caaggtattc cgtacgtaca acgcttcgaa aacactgcaa agccagctgg atctgctcac 2881 cgatccgggt gccacggtac cggagaagct cttggcctac aatcgggcca atcgcgccgt 2941 ggccatcctg tgtaaccatc agcgttccgt gcccaagggc cacgagaagt cgatggagaa 3001 tctgaaggag aagatcaaga ccaagcggga tgccatcgat gattgcgagg ctgaatatca 3061 tgatttaaag aaggccgcca aacggggatc cgtgaaggag aaggtcaatg ccgacaagaa 3121 gggcaaacag ctggagcgcc tgaaggatca gctgaagaaa ctagaattac aagagactga 3181 tagagacgag aataagacca ttgccctggg cacatctaag ctaaactatc tcgatccacg 3241 catatcggtg gcttggtgta aaaagaacgg agtgccgatc gagaagatat ttaacaaaac 3301 gcaaagaacc aaatttctgt gggccattca catggccgat gagcattatc gtttttaaat 3361 tgggttgtta tcctcacagg cacgcccacc cacacacaca gatacgcccc cctctcacac 3421 acacaaagaa gcatagacag cgcaggttga aagactagga acccgaagac actttgcccc 3481 gaaaagttta tgcaaacagt agtgcatatg ttcagctttt cggttttcgg taaaggcatt 3541 tcgggatgat tatactgctc ctcccccaga aaagaaaggg acggatgtat tctagggata 3601 gggatctgga tctgcgtctg ttttgtctgc tttggaaaaa caaaaacgtt tgattgtttc 3661 aagtgcgcgc actacgctga agtctaactt gcgaaatgta cacaccaaaa acatgccaca 3721 cacgcgttca cacttctata ttgatatata tatatggata tatatatttt aaacacaata 3781 tatatatata tatattatat acgagacaac aatttaaata aacaccaaga gaagaagaga 3841 aacctgtgca agacgtcgcc gccacctaaa aacaaaataa gagcataatt ttctatgttt 3901 taccgtctac aaaagaagca acaaattttt tctttttttt ttgtcgtcaa aactctgctg 3961 acttctctta tatattttta attaattaat ttttatatat aaactataaa caaaaaagaa 4021 agagaaagaa agtaaaagct aaaaaaaaaa ggaaaagaac ctacaagcaa acgaaaaatg 4081 ataaaattaa cggttttttt atgtttacct atagttgatt tttgtttagc gaaaaaatgt 4141 ctttcactat taattaatat taattataca attactacga ttacgtattt aagtgctaaa 4201 tgaacagaga aaccttgtag cccaactttt ttagcatagc ataatttatt caattcaaaa 4261 aaactctgat ccagcgcaat ttacccaaca cgatttatga ttttagttaa aattaaaaaa 4321 taaacgaatg ctaaattcat ttgcaaacaa a