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LOCUS XM_017145954 8536 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017145954 VERSION XM_017145954.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017145954.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8536 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8536 /gene="ct" /note="homeobox protein, cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108060310" CDS 1125..7652 /gene="ct" /codon_start=1 /product="homeobox protein cut isoform X1" /protein_id="XP_017001443.2" /db_xref="GeneID:108060310" /translation="MQPTLPQAAGTADMDLTAVQSINDWFFKKEQIYLLAQFWQQRAT LAEKEVNTLKEQLSTGNPENSDNSDTATVAAATNDSEEDQQQQQQQQQQQSDSDKLLN SSIVAAAITLQQQNGSNLLANTNTPSPSPPLLSAEQQQQLQSSLQQSGGGACLNPKLF FNHAQQMMMMEAAAAAAAAALQQQQQQQSPLHSPATEVAIPAEQPAATTGAATAAAAT PIASGNIKSSSNINHSNNTSNNNSHQEQEDQELEEDEDEEEEDEDEDDEEENASMQSN ADDMELDAQQETRTEPSATTQQQDLADLEEQNKDAGEASLNVSNNHTTDSNNSCSRKN NNGGGNESEQHVANSAEDDDCANNNTNTSNNNNTSSTTATSNTNNNNNNNNSSSGNSE KRKKKNNNNNNGQPAVLLAAKDKEIKALLDELQRLRALEQTHLVQIQRLEEHLEVKRQ HIMRLEARLDKQQINEALAEATALAAAAATNNNNNSQSSDNNKQSNKAGEAATPLDAS SSVISIGDLPEATKTSAAVPSAAAAEDEDEDEDQAMLVDSEEAEEKPEEHQRGDDDEE EEEEAEDREAVNATNTTTTTDSNELKIKKEQHSPLDLNVLSPNSALATAAAAAAAAAC ANDPNKFQALLIERTKALAAEALKNGASDAISEDAHHHQQQHHQQQQQQHHHQQHHQQ QQQHHQQQQQHHHHHHLQNSGSNSNPATNSDLNHHGHHLHHLHHLHHESSSNSSTPSV TAASGNGGSNNAGNQATQATAQLAASLASTLNGAQKSLLQEDSNGLATAAAMAAHAHL GPVSGFLPGLPAFQFAAAQVAAGGGDGRVGHYRFADSELQLPPGASMAGRLGESLIPK GDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGT VSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPQYAGRGAG GAGGDDSMSEDRIAHILSEASSLMKQTSVAHREHRELQQERRSHGEDSHSNEDSKSPP QSCTSPFFKVEQQLKQQQHQQQQHLTPEQAAAAQQREREREQREREREQQQRLRHEDL AQDKMARLYQELIARTPRETAFPSFLFSPSLFGGAAGMPGAAGNAFPAMADENMRHVF EREIAKLQQHQQQQQQQQQAAAAQFPNFSSLMALQQQVLNGAQDLSLAAAAAASKDIK LNGQRSSLEHSAGSSSSCSKDGEREDGYRKSEGGGTPAPPAPPAGAAPLPSGGAPTGA PGGATSGNSAAPSPLSNSILPPALSSQGEEFAATASPLQRMASITNSLITQPPVTPHH STPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQG SVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYS GSPQMPQGLASKMQAVGSLPMQKMMSELKLQEPGAAQAQHLMQQMQAAAMSAAMQQQQ QQQVAQQHHQQQHLVAQQQQQHLAAQQQQQQHLVAQQQQQQQQHAAAAALHHQSMLLT SPGLPPQHAISLPPSAGNPSSNPNPSSNPGEKKPMLMPVHGTNAMRSLHQHMSPTVYE MAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSI KGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDF YTSSPGPGSVGSGVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELG LATRTITNWFHNHRMRLKQQVPHGPAGQDNPIPSRESTSATPFDPVQFRILLQQRLLE LHKERMGMSGAPIPYPPYFAAAAILGRSLAGIPGAAAAAGAAAAAAAVGAATGDELQA LNQAFKEQMSGLDLSMPTLKRERSDDYQELDLELEGGSGHNLSDNESEMEGGQEEDKT TSDYEKALHKSALAAAAAYMSNAVRSSRRKPAAPQWVNPAGAVTNPSAVVAAVAAAAA AAAAADNERIINGVCVMQGSGSSSSVEPTDSGATNEEAEEHEHAQLEIDQRFMEPEVH IKQEEDDDEEEQPTATAENSGEENSELKLKVVNEEKLRMVRVRRLSSNGGGSSEEMPA PLAPPPSAGAATSSSSGAVESTSCSSSSTPAVTTAAAAASWNY" misc_feature 3762..3971 /gene="ct" /note="CUT domain; Region: CUT; pfam02376" /db_xref="CDD:460543" misc_feature 5154..5381 /gene="ct" /note="CUT domain; Region: CUT; pfam02376" /db_xref="CDD:460543" misc_feature 5973..6200 /gene="ct" /note="CUT domain; Region: CUT; pfam02376" /db_xref="CDD:460543" misc_feature 6363..6533 /gene="ct" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" polyA_site 8536 /gene="ct" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcgtgactgg caacgtcgcc tggctaacgt cgccccgttc gaaagaaatc gagactttcg 61 gaagaagact tgggactcgg actccgattc tccactgccc cgctagaagg cagtgctttc 121 tgcagtcgca ttcttctgct gcctcttctt cttcttcgta gccgcggcgc gggtgtgtga 181 gtgcgtgtgc cagcccccct ctctctctcg ctcgttcgat tcgatctacc tgctgctgtg 241 tgtgtacgcg cgtgtgtgtg tgtgtgtgtg cgggcagaag aatccaaacc acccactact 301 ccacacaatc acaacaaaat agaaatgcaa gtgcattaat tacctgtaaa tcgatgaaga 361 agaagaaacg gtaaagagat caaagccaaa aaaaccaaac aaaaacaaaa cgaagcacac 421 aaaaggacta gaaagcgaaa ctgtttatta tttttttcaa gtgtatttct gttcgctgac 481 ataaaaatat gtgcgcgtgt atgagtgtca agtgtaagca acaacaagag cagcaacaac 541 aagagccaca gcaacaacaa cgacagcaaa catgtgcaaa ataagccaaa gccagcaagc 601 aacaacaaca taataataat aataataatg gcttgaaaaa tcataataaa aaatcaagca 661 cacacaacaa ccaaaacaac aacaacatca aaccctcacc attcgccaac aactacaact 721 acaacaatcc ccccacacaa ctacaacaac aagccccttt tctaaaaaat aaataccaga 781 atttatttga ttcgaaactt gaaagtgaaa ataattaaat taataaaata ttaacacaca 841 gaaattggct tatttatgaa tttttttgag cacgtaactg aaaacataga atacttaagg 901 tgtaaatgtg atgactaaaa cctaaaaaca tagaaatcaa tataataaca actaacaaaa 961 acaaagaaaa gaacctatat aatgccaggc cttattagcc ccaaattggt agaatccaaa 1021 aactgaagag cgaaaaaaaa aacaacacaa ctaaaaaccc gaaaaccaaa accgtggaaa 1081 accaaactga ctgagcaatt gaattaaccc cagaaagccc acgaatgcag ccaacattgc 1141 cacaagccgc tgggacagcc gatatggatc tgacggctgt tcaatcaatc aacgattggt 1201 ttttcaaaaa ggagcaaatt tatttattgg cacagttttg gcaacagcgc gctaccctgg 1261 ccgagaagga ggtgaacaca ctcaaagagc agctatccac aggcaatccc gagaacagcg 1321 acaacagcga cacagcaaca gttgcagcag caacaaacga cagtgaggag gatcaacagc 1381 agcagcagca gcagcaacaa cagcaaagcg acagcgacaa gctgctgaac agctccattg 1441 ttgcagcggc cataacgctg caacagcaga acggcagcaa tctgctggcg aacacaaata 1501 cgccgtcgcc ctcgccgccg ttgctcagcg ccgagcagca gcagcagttg cagagcagtt 1561 tgcaacagag cggcggtggc gcctgcctca atccgaagct cttcttcaat cacgcccagc 1621 agatgatgat gatggaggcg gcagctgcgg cagcagcggc ggcactgcaa cagcagcagc 1681 aacagcaatc gccgttgcat tcgccggcga ctgaggtggc aattcccgca gaacagccag 1741 cagcaacaac gggagcggct acagcagcag cagcaacacc gattgccagt ggcaacatca 1801 agagcagcag caacatcaat cacagcaaca acaccagcaa caacaacagt caccaggagc 1861 aggaggacca ggagctggaa gaagatgagg atgaggagga ggaggatgag gacgaggacg 1921 atgaggagga gaatgcctcg atgcaatcga atgccgatga tatggagctg gatgcacagc 1981 aagaaaccag aactgagcca agtgcaacaa cgcaacagca ggatcttgcc gatcttgagg 2041 agcagaacaa ggatgcgggg gaggctagtt taaatgttag caataatcac acaaccgata 2101 gcaataatag ttgtagtcga aagaacaaca atggtggcgg caatgagagt gagcaacatg 2161 ttgccaattc ggcggaggac gatgattgcg ccaacaacaa tacaaacacc agcaataaca 2221 acaataccag cagcaccacc gccaccagca acaccaacaa caacaataac aacaacaaca 2281 gcagcagtgg caacagcgag aagcgcaaga agaagaacaa taacaacaac aatggccagc 2341 ctgctgttct attagctgcc aaagataaag agattaaagc acttctggac gaactgcaac 2401 gcctgagggc gctggagcag acgcatctgg tgcaaatcca gcgactggag gagcatttgg 2461 aggtcaagcg ccagcacata atgcgattgg aggcgcgtct cgataagcag cagatcaatg 2521 aggctctcgc cgaggcgacc gctttggcgg cagcagctgc caccaataac aacaataata 2581 gccagagcag cgacaacaat aagcagagca acaaggcagg agaagccgcc acaccgctgg 2641 atgcgtcatc atccgtcatc agcattggcg atctgccgga ggccacaaag acttcagcag 2701 cagttccttc tgccgccgcc gctgaggatg aggatgagga cgaggatcag gccatgctgg 2761 ttgactccga ggaggcggag gagaagccag aggagcacca gcggggtgac gacgacgagg 2821 aggaggagga ggaggccgag gatcgggagg cggtcaatgc caccaacacc accaccacca 2881 ccgatagcaa cgagctcaaa atcaaaaagg aacagcacag tccgctggat ctgaatgtgc 2941 tcagtccgaa ttcagctttg gccactgcag ctgcggccgc cgctgccgcc gcctgcgcca 3001 acgaccccaa caaattccag gcgctgctca tcgagcggac caaagccctg gccgccgagg 3061 cgctcaagaa tggcgccagt gatgccatca gcgaagatgc ccaccaccac cagcagcaac 3121 atcaccagca acagcagcag caacaccacc accagcaaca tcaccagcag cagcagcaac 3181 accaccagca acagcagcaa caccaccatc atcatcacct gcaaaatagc ggcagcaaca 3241 gcaatccagc gaccaacagc gacttgaatc atcatggcca tcacttgcat catttgcatc 3301 acttgcatca cgaatccagt tcgaattcga gtacaccttc ggttacggcg gcgtctggga 3361 acggtggtag caacaatgct ggcaaccagg ccacccaggc caccgctcaa ctggccgcca 3421 gtttggccag cacactgaac ggagcacaga aatcgctgct gcaggaggat agcaatggac 3481 tggccaccgc cgccgcaatg gccgctcatg cccatttggg tccagtatcc ggttttctgc 3541 ccggcctacc ggcctttcaa tttgccgccg cccaagtggc cgccggtggt ggcgatggac 3601 gtgtgggtca ctatcgtttc gccgattcgg aactgcaatt gcctcccgga gcctcgatgg 3661 ccggccgttt gggtgaatca ctgataccca agggcgatcc catggaggcc aagctgcagg 3721 agatgctgcg ctacaacatg gataagtacg ccaatcaggc gctggatacc ctgcacattt 3781 cgcgtcgcgt tcgggaactc ctgtcggtgc acaacattgg ccagcggctg tttgccaaat 3841 acatattggg cctgtcgcaa ggcaccgtct cggagctgtt gagcaaaccc aagccatggg 3901 acaagctgac ggagaaggga cgcgatagct accgcaaaat gcacgcctgg gcctgtgacg 3961 ataatgccgt catgctgctc aaatcgctga tacccaagaa agattctggc ctgccgcagt 4021 atgcgggtcg tggagccggc ggcgctggcg gcgatgattc catgtccgag gaccggattg 4081 cccacatcct cagcgaggcc tcgtcgctga tgaagcagac gagcgtggcc catcgggagc 4141 atcgggagct ccagcaggag cgtcgcagtc acggcgagga ttcgcacagc aacgaggaca 4201 gcaagtcgcc gccgcagagc tgcacctcgc ccttcttcaa ggtcgagcag cagctgaagc 4261 agcagcagca ccagcagcag cagcatctca ctcccgaaca ggcagcggcc gcccagcaga 4321 gggaaaggga gagggagcag cgggagaggg agcgagagca gcagcaacga ctgaggcacg 4381 aggacttggc ccaggacaag atggcccggc tctaccagga gctaattgca cgcactccca 4441 gggagacggc ctttccaagc ttcctcttct caccctcgct gttcggagga gccgccggca 4501 tgccgggagc ggctggcaat gcctttcccg ccatggccga tgagaatatg cgtcatgtct 4561 tcgagcgcga gatcgccaag ctgcagcagc accagcagca gcagcagcaa cagcaacagg 4621 cggccgccgc ccagttcccc aacttctcga gcctgatggc cctgcagcag caggtgctca 4681 atggcgccca ggatctctcg ctggccgccg cggccgccgc ctccaaggac atcaagctga 4741 atggccagcg atcctcgttg gagcacagcg ccggcagcag tagcagctgc tccaaggatg 4801 gcgaacggga ggatggctac cggaagtccg agggaggcgg tacaccagct cccccagcac 4861 cgccagcggg agcagctcca ctgcccagcg gaggagcacc aactggagca ccaggtggag 4921 caaccagcgg caactcggcg gcgcccagtc cgctgagtaa ctccatctta cccccagctt 4981 taagcagcca aggagaggag tttgcggcca cggccagtcc gctgcagcga atggcctcga 5041 taaccaactc gctgatcacc cagccgccgg tgacgccgca tcacagtact ccacaaagac 5101 ccaccaaggc ggtcctgccg cccatcaccc agcagcagtt cgatatgttc aacaatctca 5161 acacggagga tatcgtgaga agggtcaagg aggcgctctc gcagtactcc atttcccagc 5221 gtttgtttgg tgaatctgtg ctgggattat cgcagggttc cgtctctgat ttgctggcgc 5281 ggcccaaacc ctggcacatg ctcactcaaa agggtaggga gcccttcatc cgcatgaaga 5341 tgttcctgga ggacgagaat gcggtgcaca agctggtggc cagtcagtac aagattgccc 5401 ccgagaaact gatgcgcacg ggcagttaca gcggcagtcc gcaaatgccg cagggattgg 5461 ccagcaaaat gcaggcggtg ggctccctgc ccatgcagaa gatgatgagc gagctgaagt 5521 tgcaggaacc gggagctgcc caagcgcagc atctcatgca acagatgcag gcggcggcca 5581 tgtcggcggc catgcagcag cagcagcagc agcaggtggc tcagcagcat caccagcaac 5641 aacatctcgt tgcccagcag cagcagcaac atctggctgc tcagcagcaa cagcagcaac 5701 atctcgtcgc ccagcagcag cagcaacagc agcaacatgc cgcggccgct gcactgcatc 5761 accagagcat gctgctcacc tcgcccggcc tgccgcccca gcatgccatc agcctgcctc 5821 cgtcggctgg caatccgagt tccaatccca atccgagcag caatcccggc gagaagaagc 5881 ccatgctgat gcccgtgcat ggcacgaatg ccatgaggag tctgcaccag cacatgtcgc 5941 ccacggtcta cgagatggct gccttgaccc aggatctgga tacgcatgat attaccacca 6001 agatcaagga ggccctgttg gccaataaca ttggccagaa gatattcggt gaggctgtgc 6061 tgggactctc gcagggatcc gtctccgagc tgctaagcaa accgaagccg tggcatatgt 6121 tgtccatcaa gggaagggaa cccttcattc ggatgcagct gtggctgagc gatgccaaca 6181 atgtggagcg attgcagctg ctgaaaaatg agcggcggga ggcgagcaag cgaaggagga 6241 gcacgggacc gaatcagcag gacaacagca gcgatacctc gagcaatgat accaatgatt 6301 tctataccag cagtccggga ccgggttcag tgggttccgg tgtgggtgga gcaccgccga 6361 gcaaaaagca gcgtgtgctc ttctccgagg agcaaaagga ggctctccga ttggcctttg 6421 ccctggatcc ctatcccaat gtgggcacca ttgaatttct ggccaatgaa ttgggtttgg 6481 ccactcgaac catcaccaat tggttccaca atcatcgcat gcgcttgaag caacaggttc 6541 cccatggacc cgccggccag gataatccga taccgagtcg cgagagcacc agtgccacgc 6601 ccttcgatcc cgtccagttc cgcatcctgc tgcagcagcg tctgctggag ctgcacaagg 6661 agcggatggg catgagtggt gcaccgattc cgtatccccc gtactttgca gctgctgcca 6721 ttttgggacg cagcttggcg gggattcctg gagcagcggc ggcggcagga gcagctgcag 6781 cagcggccgc cgtgggagca gccaccggtg atgaactgca ggccctgaat caggccttca 6841 aggagcagat gagcggattg gatttatcca tgcccacgtt gaagcgcgag cgcagcgatg 6901 actatcagga actggacttg gagctagagg gaggttcggg tcacaacctc agcgacaatg 6961 agtccgaaat ggagggtggt caggaggagg ataagacaac cagcgattac gagaaggctt 7021 tgcacaagtc cgctttagca gccgccgccg cctacatgtc gaatgcggtg cgcagttcgc 7081 gacgcaagcc ggctgccccc cagtgggtca atcccgccgg tgcagtgacc aatcccagtg 7141 ccgtcgtggc agccgtggca gcggcagcag cagcagccgc agcagcggac aacgagcgca 7201 tcatcaacgg ggtgtgcgtg atgcagggat cgggatcctc ctcctccgtc gaaccaacgg 7261 atagtggggc cacaaacgag gaggcggagg agcatgagca tgcccagctg gagattgatc 7321 agcggttcat ggagccggag gtgcacatca agcaggagga ggacgacgac gaggaggagc 7381 aaccaacggc gacagcggag aacagcggcg aggagaacag cgagctgaag ctgaaagtgg 7441 tcaacgagga gaagctgcga atggtgcggg tgcgacgact gagcagcaat ggcggtggct 7501 cctccgagga gatgcccgcc ccgctggcgc ctccaccttc agcaggagcg gccacttcat 7561 catccagtgg agcagtggaa agcaccagtt gcagtagcag ctccacaccg gcagtgacca 7621 cagcagcagc cgccgccagt tggaattact agataaaaac tattaagtaa aaactaaaaa 7681 tatatatgaa tataaattca gtgcaattgt agagagaagg agagaagaaa aagcgcgttt 7741 acttgtgatt aagtttgaat gtttaaacga tgaggataca cacccataca tatattatac 7801 atatataaat agcacttagg aacacttagg agaactctat atatatattt ttttttgttt 7861 tttttttttg tattgtcatt aaacattaac tactaaatat aggatgttag ttgtagagtt 7921 ataagattat agccttaggt tgagcagttg taatagttgt agctaaaagt ttagagaagc 7981 tatgcgatgg aggatagaag ttgagatgag ggagcagcgc aaaagtatta atgagaaaaa 8041 ataaacccat ttaagacccc cgacttgccg aagaacttta accaaaacgt cgagatccga 8101 ttgataagga aagatttgat cttgctaaga ttttcgattt cgatttttca atttgtttct 8161 acttgaagac tgtaagcaaa ggcggtagga ttgataacta cacacgtaat tcgtaattct 8221 attctatgca tacattatat tctatttttt ttttttgagt aactattatc tatgattatt 8281 agcagtttag ctggcttaag tgtaaataaa tcaagttaaa taaataaatg aaaatgtaca 8341 tagatttctc gcgaggcatg aggcatgatc ttgctgtcgt tcttcctaac agatcctacc 8401 ttctacacac caccctcagc aaccgacttg tttaactatc ttttgatctc aagcaaaaaa 8461 caaaaacaaa acaaaaaacg taaccgatat ttaaaaggga attgtggaag gagtggagtg 8521 aaaatccaaa gtaaaa