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LOCUS XM_017143100 2543 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017143100 VERSION XM_017143100.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143100.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2543 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2543 /gene="CalpC" /note="calpain C; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108058403" CDS 1..2073 /gene="CalpC" /codon_start=1 /product="calpain-C" /protein_id="XP_016998589.2" /db_xref="GeneID:108058403" /translation="MASKYERILSDCRAKNVLWEDPDFPAVQSSVFYYQTPPFTFQWK RIVDLAMDNGSGSGSGSGSVPVFLNETAEFDVVPGKMGDRWLVSCLGLLSSLRNLFYR VVPADQTLTNAHGVFRFRLWWCGEWVEVLVDDRLPTINGRLAFMQPQASNCFWAALLE KAIAKLHGSYEALKYGTRSDGLTDLLGGVVRQMPILADNIRPQTLKELLTTTCIVTCL ADKGATVAKKNLAERMPNGILVNVNYRLSSLDKVKTLMGDSVQLVCLKDTFSSRPFGE KTHFLGDWSPSSKTWERVSQVERARLIRQLGPGEFWLSFCDFVEIFTTMEVVYLDTET SQDEEMLKSRPLHWKMKMHQGQWKRGVTAGGCRNHESFHINPQLLIAVQDQQDLVVAL NQHTAVEPKVIGFTMYNWDGDYLLSECLQKDFFKNHVSFLNSDYGNTRHVSYHTHLEA GHYVLIPTTYEPAEEAHFTVRILGTGSFRLSCLETQTMILLDPFPALKSSESDRCSGV GAPGASAGQKVKSVCQYEPVYMQLADENKTINCFELHELLEACLPNDYIKGCANIDIC RQVIALQDRSGSGRITFQQFKTFMVNLKSWQGVFKMYTKEKAGILRAERLRDALCDIG FQLSTDIMNCLIQRYIRKDGTLRLSDFVSAVIHLTTAFNQFHLKNYSQVNVIEVHLHD WIKSILSC" misc_feature 19..987 /gene="CalpC" /note="Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction; Region: CysPc; cd00044" /db_xref="CDD:238004" misc_feature order(250..252,724..726,799..801) /gene="CalpC" /note="catalytic site [active]" /db_xref="CDD:238004" misc_feature 1036..1449 /gene="CalpC" /note="Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are...; Region: Calpain_III; cd00214" /db_xref="CDD:238132" misc_feature 1570..2067 /gene="CalpC" /note="The penta-EF hand (PEF) family; Region: EFh_PEF; cl25352" /db_xref="CDD:355382" misc_feature 1570..1656 /gene="CalpC" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320054" misc_feature order(1606..1608,1627..1629,1720..1722,1726..1728, 1732..1734,1753..1755,1810..1812,1816..1818,1822..1824, 1843..1845) /gene="CalpC" /note="Ca binding site [ion binding]; other site" /db_xref="CDD:320054" misc_feature order(1693..1695,1699..1701,1729..1731,1891..1893, 1900..1902,1909..1920,1948..1950,1960..1962,1969..1974, 1981..1986,1993..1995,2020..2043,2047..2067) /gene="CalpC" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:320054" misc_feature 1693..1782 /gene="CalpC" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320054" misc_feature 1783..1872 /gene="CalpC" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320054" misc_feature 1891..1977 /gene="CalpC" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320054" misc_feature 1981..2067 /gene="CalpC" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320054" ORIGIN 1 atggcatcca aatacgagcg catattgagc gattgcaggg cgaagaacgt gctgtgggaa 61 gaccccgatt tccccgcggt tcagtcgtcc gtcttctatt accaaacgcc ccccttcacc 121 ttccaatgga aacgtatagt ggatctggcc atggataatg gatctggctc aggatcggga 181 tctggatcag taccggtgtt cctcaatgag acggccgaat tcgacgtggt tcctggcaaa 241 atgggcgatc gctggctggt ctcctgcctg gggctgctca gttctttgag gaatctcttc 301 taccgggtgg tgcccgccga tcagacctta accaatgccc acggcgtctt tcgcttccgc 361 ttgtggtggt gcggcgaatg ggtggaggtc ctcgtcgacg atcgactgcc caccatcaac 421 ggtcgtctgg ccttcatgca gccgcaggca tcgaattgct tctgggccgc cctgctggag 481 aaggccattg ccaagctgca cggctcctac gaggcgctca agtatggaac gcgatcggat 541 ggactgacgg atctcctggg cggcgttgtc cggcaaatgc ccatcctggc ggacaacata 601 cggccgcaga cgctcaagga gctgctgacc accacctgca ttgtcacctg tctggccgac 661 aagggcgcca ccgtggccaa gaagaacctg gccgagcgaa tgcccaacgg gatattggtg 721 aacgttaact acagactctc cagcctggac aaggtgaaga ccctgatggg ggactcggtg 781 cagctggtgt gcctgaagga cacgttctcg agcaggccgt ttggcgagaa gacgcacttc 841 ctcggcgact ggtcgccatc gtcgaagacg tgggagcgcg tttcgcaggt ggagcgggcg 901 cgtctcatcc gccagctggg tcccggcgag ttctggttgt ctttctgcga tttcgtcgag 961 atcttcacca ccatggaggt ggtgtacctg gacacggaga cctcccagga cgaggagatg 1021 ctcaagagtc ggccgctgca ttggaaaatg aagatgcatc agggtcaatg gaagcgaggc 1081 gtcaccgccg gtggttgtcg caatcacgag tcctttcaca tcaatcccca gctgctgatt 1141 gcggtgcagg atcaacagga tctggtggtg gcgctcaatc agcacacggc cgtcgaaccg 1201 aaggtcattg ggttcaccat gtacaactgg gatggcgact acttgctcag cgagtgcctg 1261 cagaaggact tcttcaagaa tcacgtcagc ttcctcaatt cggactatgg caatacgcgg 1321 cacgtcagct atcatacgca cttggaggcg ggccattatg tgctcattcc gaccacctat 1381 gaaccggcgg aggaggccca tttcacggtt cgcatcctgg gcactggatc gtttcgtctc 1441 tcctgtttgg aaacgcagac catgatcctc ctcgatccat ttccggcgct caagagctcg 1501 gaaagcgatc gatgctcggg tgtaggtgct ccaggtgctt cagctggcca aaaggtgaag 1561 agcgtgtgcc agtacgagcc cgtctacatg cagctggccg atgagaacaa aacgatcaac 1621 tgcttcgagc tgcacgaact gctggaggcc tgcctgccca acgattatat caagggatgc 1681 gccaatatcg acatctgccg ccaggttatc gccttgcagg acaggagcgg aagtgggagg 1741 attacctttc agcagttcaa gacctttatg gtgaatttga agtcctggca gggcgtcttt 1801 aagatgtaca ccaaggagaa ggcaggcatt ttgcgggccg aacgactgcg agatgccctg 1861 tgcgacattg gctttcagct gagcaccgac atcatgaact gcctgatcca gcgatatatc 1921 cgcaaggatg gcaccttgcg actgagcgac tttgtgtccg ccgtcatcca cctgaccact 1981 gccttcaatc agttccacct gaagaactac agccaggtga acgtcatcga ggtccatctg 2041 cacgactgga taaaaagcat cctgagctgc tgaatgaatt tctgtctttt tttttcgaga 2101 aatcttaaga ttctatttgt ttaacataag gataaggatg cgacggagcc agtttcgctt 2161 gattactatc tttaatctat aactatgttt ttttgtaacc cataaactta agatttcgtt 2221 acgaagattc ttaattctaa actcttggct ttaacccaat tcatgttcgt tttctcgacc 2281 atttgttcaa tttaatttaa ttttaattta acttgcgaac gagaagacgg cctttaataa 2341 gttgtaaact ccctaaaaca gctaaaaggg aaacccctac actcatagaa atttgtttct 2401 aaaatttaga aatctcgcct tttaatttgt tttaagaaat ttagccttta aatctagaag 2461 ttttctatac ttaaaggcaa ttttattaaa aagaagaaca aattttttcc atttccaaag 2521 gcgagctttc taaattttag aaa