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LOCUS XM_017142756 3736 bp mRNA linear INV 09-DEC-2024 factor (Vav), transcript variant X3, mRNA. ACCESSION XM_017142756 VERSION XM_017142756.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142756.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3736 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3736 /gene="Vav" /note="Vav guanine nucleotide exchange factor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108058170" CDS 488..3490 /gene="Vav" /codon_start=1 /product="protein vav isoform X3" /protein_id="XP_016998245.2" /db_xref="GeneID:108058170" /translation="MASNSSSNSFGGVAGVNGDLWRECVAWLTRCKVIPPDHKAAQAD AEIRILAMTLRDGVLLCNLVIHLDPSSMDPREFNRKPQMAQFLCSKNIKLFLDVCHNN FGIRDADLFEPTMLYDLTNFHRVLITLSKLSQCRKVQQMHPDLVGFNLQLSPSERSHS DEAIYKDLHSTDLSMRKASSIDAASASSSAEYYDRTSQSGSLDENSDITIENGTEDTD DYIEDSLSNMCDSTIENDLLEDAGVETPLLADCDGGSLRALSFDLTLDVVNSDASNAV TPTPESYAAALGDTAPTAAAAAAASGIPPMGRLVSTTSSSSSSLLVSESQRLQKAAAA VYNYRSSMASTEHEYAYIYSEDDEKVYEDLCYVTFQAKAKKPEVTTDNIACNGTGYDH TNTKEEEVYQDLCALHRTSRSQTASSTSFEQRDYVIRELIDTESNYLDVLTALKTKFM APLERHLNQDELRLIFPRIRELADIHTKFLDKLRESLTPNAKMKMAQVFLEFREPFLI YGEYCSCLLGAIDYLADVCKKNQIIDQLVQKCERDYNVGKLQLRDILSVPMQRILKYH LLLDKLVKETSPLHDDYRSLERAKEAMIDVSQYINEVKRDSDHLVIIQKVKDSIFDLN LLQNGNGSDLLQYGRLLLDGELHIKAHEDQKTKLRYAFVFDKILIMVKALHIKTGDMQ YTYRDSHNLADYRVEQSHSRRTLGRDTRFKYQLLLARKSGKTAFTLYLKSEHERDKWR KALTEAMESLEPPGCRSTDHKMEIYTFDAPTTCRHCSKFLKGRIHQGYRCKVCQISVH KGCISSTGRCKQNPVSVPPPVCDRQLSEFNWFAGNMDRETAAHRLENRRIGTYLLRVR PQGPSTAHETMYALSLKTDDHVIKHMKINQENSGDSMLYCLSSRRHFKTIVELVSYYE RNDLGENFAGLNQSLQWPYKEVIATALYDYEPKAGSNQLQLRTDCQVLVIGKDGDSKG WWRGKIGDTVGYFPKEYVQEQKLASEEL" misc_feature 542..892 /gene="Vav" /note="calponin homology (CH) domain found in VAV proteins; Region: CH_VAV; cd21201" /db_xref="CDD:409050" misc_feature order(545..547,557..559,746..748,752..757,764..769, 773..775,806..832,848..850,854..859,863..868,875..880, 887..889) /gene="Vav" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409050" misc_feature 1766..2290 /gene="Vav" /note="RhoGEF domain; Region: RhoGEF; pfam00621" /db_xref="CDD:459876" misc_feature 2360..2743 /gene="Vav" /note="Vav pleckstrin homology (PH) domain; Region: PH_Vav; cd01223" /db_xref="CDD:269930" misc_feature 2759..2914 /gene="Vav" /note="protein kinase C conserved region 1 (C1 domain) found in VAV proteins; Region: C1_VAV; cd20810" /db_xref="CDD:410360" misc_feature 2954..3286 /gene="Vav" /note="Src homology 2 (SH2) domain found in the Vav family; Region: SH2_Vav_family; cd09940" /db_xref="CDD:198193" misc_feature order(2993..2995,3047..3049,3128..3130,3134..3136) /gene="Vav" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198193" misc_feature order(3131..3133,3224..3226) /gene="Vav" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198193" misc_feature 3302..3463 /gene="Vav" /note="Src Homology 3 domain superfamily; Region: SH3; cl17036" /db_xref="CDD:473055" misc_feature order(3311..3313,3317..3319,3329..3331,3341..3343, 3401..3406,3443..3445,3449..3454) /gene="Vav" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212690" polyA_site 3736 /gene="Vav" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 catacgcgag gcaaagacat atcggaagtc gagtccgctc ttcctcttcg ataaacccaa 61 tattttgcaa taaaataaat tagtttttaa aactaaggca gcgagcattt tgcagccgaa 121 agcgagtcac agttttgagc gtaattcggt atttcggtgc ggcacgcggc agcgcaattg 181 gcgaccaacc gatttgggtc gcccacctat tgttgttgtg ttgtgcttgt gctttctgtt 241 ttcccttttc cgcttttcgt ttttcgcctt tcgttctgtg tatctgtgtg ttctcgttct 301 ccacattcgc attcggttca gtttgagttc accaatccaa tcgcaattgc aacaacaaca 361 acggccaact gatgagtctc aattgttttc attaacgcta cgaaagtcgc ccccttccag 421 tccagtttcc agtcacccta cccgcccctt ttggccacac ccaccccccg aaccgccacc 481 cgtcgaaatg gccagcaaca gcagcagcaa cagttttggg ggcgtggcag gcgtgaacgg 541 ggatctgtgg cgcgaatgcg tcgcctggct aaccaggtgc aaggtcatcc cgcccgacca 601 caaggccgcc caggcggacg cggagatccg catcctggcg atgaccctgc gcgacggagt 661 gctgctctgc aacctggtca tccacctgga ccccagcagc atggatccgc gcgagttcaa 721 tcgcaagcca caaatggcac agttcctgtg cagcaagaac atcaagctgt tcctggacgt 781 gtgccacaac aacttcggga tccgcgacgc cgatctcttc gagccgacga tgctgtacga 841 cctgaccaac ttccaccgcg tcctcatcac gctctccaaa ttgtcgcagt gccgcaaggt 901 gcagcaaatg catccggatc ttgttggctt caatctgcag ctgtcgccca gtgaacgttc 961 ccattcggac gaggccatct acaaggacct gcattccacg gatctgagca tgcggaaagc 1021 gagcagcatt gatgccgcct ccgcctcctc gtcggcggaa tactacgatc gaacctcgca 1081 gagcggatcg ctggacgaga atagcgacat caccatcgag aatggcaccg aggacaccga 1141 cgactacatc gaggattcgc tctccaatat gtgcgattcg accattgaga acgatttgct 1201 ggaggatgcg ggcgtggaga cgcctttgct ggccgattgc gatggtggca gtttgcgagc 1261 gctctccttt gatctcaccc tggatgtggt taactcggat gcctccaatg cggtcacacc 1321 cacgccggaa tcctatgctg ccgctttggg tgacaccgca ccaacagcag cagcggcagc 1381 ggcggcgtcg ggcattccac ccatgggccg cctggtgtcc accacctcct cctcgtcgtc 1441 gtcgcttttg gtcagcgaga gccagcgact gcagaaggcg gccgcagccg tctacaatta 1501 ccgatcctcg atggcgtcca ccgagcacga gtatgcctac atctacagcg aggatgatga 1561 gaaggtctac gaggacctgt gctacgtcac cttccaggcg aaggccaaaa aacccgaggt 1621 taccaccgac aatattgcat gcaatggaac cggttacgac cacacaaaca cgaaagagga 1681 ggaggtctac caagatctgt gtgcgctgca caggacgagt agaagccaga ccgcctcgtc 1741 gacgagcttc gagcagcgcg actacgtcat ccgggagcta atcgacacgg agtctaacta 1801 tctggacgtg ctcaccgccc tgaagaccaa gttcatggct ccgctggagc ggcatctcaa 1861 tcaggacgag ctgcgtctca tattcccgcg cattcgagaa ctggccgaca ttcacacaaa 1921 gttcctggac aagctgcgcg aatcgctgac gccgaatgcc aaaatgaaaa tggcccaggt 1981 cttcctcgag ttccgcgagc ccttcctcat ctacggcgaa tactgctcct gcctgctggg 2041 cgccatcgac tatctggcgg atgtgtgcaa gaagaaccag ataatcgacc agctggtgca 2101 gaaatgcgag cgggactaca atgtgggcaa gctgcagctg cgcgacatcc tctcggtgcc 2161 gatgcagcgc atcctcaagt accatttgct gctggacaag ctggtgaagg agacgtcgcc 2221 gctgcacgac gactaccgat cgctggagcg ggccaaggag gccatgatcg atgtgtcgca 2281 gtatatcaac gaggtgaagc gcgactccga ccatctggtc atcatacaga aggtgaagga 2341 cagcattttc gatctgaatc tgctgcagaa tggcaacggc agcgatttgc tgcagtacgg 2401 acgccttctc ctcgacggcg agctgcacat caaggcgcac gaggatcaga agaccaagct 2461 gcgctacgcc ttcgtcttcg acaagatcct catcatggtg aaggcgctgc acatcaagac 2521 aggcgacatg cagtacacgt accgcgactc gcacaacctg gccgactatc gggtggagca 2581 gagccattcg cgccggactc tgggcaggga tacgcgcttc aagtaccagc tgctgctggc 2641 ccgcaaatcg ggcaaaacgg ccttcacatt gtacctcaag tcggagcacg aacgggataa 2701 gtggcgcaag gccctcaccg aagccatgga aagcctggaa ccgcccggct gccggagtac 2761 cgaccacaaa atggagatct acaccttcga tgcgccgacg acgtgccgcc actgctcgaa 2821 attcctcaag ggccgcatcc accagggcta tcggtgcaag gtgtgccaga taagcgtgca 2881 caagggctgc atctcgtcga cggggcgctg caaacagaat ccggttagcg tgccgccgcc 2941 cgtctgcgat cgtcagctgt ccgagtttaa ctggtttgcg ggcaacatgg accgggagac 3001 ggcggcccat cggctggaga accgtcgcat aggcacctat ctgctgcgcg ttcgacccca 3061 gggaccgtcc accgcccacg agacgatgta cgcgcttagc ctgaaaaccg atgatcatgt 3121 cattaagcac atgaaaatca accaggagaa ctccggcgat tccatgctct attgcctgtc 3181 ctcgcgcagg catttcaaga ccattgtcga gctggtttcc tactacgaac gcaacgatct 3241 gggggagaac tttgcggggc tcaatcagtc actgcagtgg ccctacaagg aggtgatcgc 3301 caccgctctc tatgattacg agccaaaggc cggcagcaat cagctgcagc tgcgcaccga 3361 ctgccaggtg ctggtcattg gcaaggatgg cgacagcaag ggctggtggc gcggcaaaat 3421 aggcgacacg gtgggctact tccccaagga gtacgtgcag gagcagaaac tggccagcga 3481 agagctttga tattacaatt acgaggttta ctttgcaccc aaggccatta cgcccgcaac 3541 ggcagccatt gctgagtcgc caggaggagc tgaagctgcc agtggaggag gaggagctgt 3601 agcccccgcc gagatcagcc tgatcagcag ccagagccac agcaacaaca actgcagcta 3661 gatcgtaccc tagttaaata tgtttattta cacacatatt ttaaaataca aattgttttg 3721 ttcttttttg tttata