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LOCUS XM_017142755 3115 bp mRNA linear INV 09-DEC-2024 factor (Vav), transcript variant X2, mRNA. ACCESSION XM_017142755 VERSION XM_017142755.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142755.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3115 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3115 /gene="Vav" /note="Vav guanine nucleotide exchange factor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108058170" CDS 488..2869 /gene="Vav" /codon_start=1 /product="protein vav isoform X2" /protein_id="XP_016998244.1" /db_xref="GeneID:108058170" /translation="MASNSSSNSFGGVAGVNGDLWRECVAWLTRCKVIPPDHKAAQAD AEIRILAMTLRDGVLLCNLVIHLDPSSMDPREFNRKPQMAQFLCSKNIKLFLDVCHNN FGIRDADLFEPTMLYDLTNFHRVLITLSKLSQCRKVQQMHPDLVGFNLQLSPSERSHS DEAIYKDLHSTTTDNIACNGTGYDHTNTKEEEVYQDLCALHRTSRSQTASSTSFEQRD YVIRELIDTESNYLDVLTALKTKFMAPLERHLNQDELRLIFPRIRELADIHTKFLDKL RESLTPNAKMKMAQVFLEFREPFLIYGEYCSCLLGAIDYLADVCKKNQIIDQLVQKCE RDYNVGKLQLRDILSVPMQRILKYHLLLDKLVKETSPLHDDYRSLERAKEAMIDVSQY INEVKRDSDHLVIIQKVKDSIFDLNLLQNGNGSDLLQYGRLLLDGELHIKAHEDQKTK LRYAFVFDKILIMVKALHIKTGDMQYTYRDSHNLADYRVEQSHSRRTLGRDTRFKYQL LLARKSGKTAFTLYLKSEHERDKWRKALTEAMESLEPPGCRSTDHKMEIYTFDAPTTC RHCSKFLKGRIHQGYRCKVCQISVHKGCISSTGRCKQNPVSVPPPVCDRQLSEFNWFA GNMDRETAAHRLENRRIGTYLLRVRPQGPSTAHETMYALSLKTDDHVIKHMKINQENS GDSMLYCLSSRRHFKTIVELVSYYERNDLGENFAGLNQSLQWPYKEVIATALYDYEPK AGSNQLQLRTDCQVLVIGKDGDSKGWWRGKIGDTVGYFPKEYVQEQKLASEEL" misc_feature 542..892 /gene="Vav" /note="calponin homology (CH) domain found in VAV proteins; Region: CH_VAV; cd21201" /db_xref="CDD:409050" misc_feature order(545..547,557..559,746..748,752..757,764..769, 773..775,806..832,848..850,854..859,863..868,875..880, 887..889) /gene="Vav" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409050" misc_feature 1145..1669 /gene="Vav" /note="RhoGEF domain; Region: RhoGEF; pfam00621" /db_xref="CDD:459876" misc_feature 1739..2122 /gene="Vav" /note="Vav pleckstrin homology (PH) domain; Region: PH_Vav; cd01223" /db_xref="CDD:269930" misc_feature 2138..2293 /gene="Vav" /note="protein kinase C conserved region 1 (C1 domain) found in VAV proteins; Region: C1_VAV; cd20810" /db_xref="CDD:410360" misc_feature 2333..2665 /gene="Vav" /note="Src homology 2 (SH2) domain found in the Vav family; Region: SH2_Vav_family; cd09940" /db_xref="CDD:198193" misc_feature order(2372..2374,2426..2428,2507..2509,2513..2515) /gene="Vav" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198193" misc_feature order(2510..2512,2603..2605) /gene="Vav" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198193" misc_feature 2681..2842 /gene="Vav" /note="Src Homology 3 domain superfamily; Region: SH3; cl17036" /db_xref="CDD:473055" misc_feature order(2690..2692,2696..2698,2708..2710,2720..2722, 2780..2785,2822..2824,2828..2833) /gene="Vav" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212690" polyA_site 3115 /gene="Vav" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 catacgcgag gcaaagacat atcggaagtc gagtccgctc ttcctcttcg ataaacccaa 61 tattttgcaa taaaataaat tagtttttaa aactaaggca gcgagcattt tgcagccgaa 121 agcgagtcac agttttgagc gtaattcggt atttcggtgc ggcacgcggc agcgcaattg 181 gcgaccaacc gatttgggtc gcccacctat tgttgttgtg ttgtgcttgt gctttctgtt 241 ttcccttttc cgcttttcgt ttttcgcctt tcgttctgtg tatctgtgtg ttctcgttct 301 ccacattcgc attcggttca gtttgagttc accaatccaa tcgcaattgc aacaacaaca 361 acggccaact gatgagtctc aattgttttc attaacgcta cgaaagtcgc ccccttccag 421 tccagtttcc agtcacccta cccgcccctt ttggccacac ccaccccccg aaccgccacc 481 cgtcgaaatg gccagcaaca gcagcagcaa cagttttggg ggcgtggcag gcgtgaacgg 541 ggatctgtgg cgcgaatgcg tcgcctggct aaccaggtgc aaggtcatcc cgcccgacca 601 caaggccgcc caggcggacg cggagatccg catcctggcg atgaccctgc gcgacggagt 661 gctgctctgc aacctggtca tccacctgga ccccagcagc atggatccgc gcgagttcaa 721 tcgcaagcca caaatggcac agttcctgtg cagcaagaac atcaagctgt tcctggacgt 781 gtgccacaac aacttcggga tccgcgacgc cgatctcttc gagccgacga tgctgtacga 841 cctgaccaac ttccaccgcg tcctcatcac gctctccaaa ttgtcgcagt gccgcaaggt 901 gcagcaaatg catccggatc ttgttggctt caatctgcag ctgtcgccca gtgaacgttc 961 ccattcggac gaggccatct acaaggacct gcattccact accaccgaca atattgcatg 1021 caatggaacc ggttacgacc acacaaacac gaaagaggag gaggtctacc aagatctgtg 1081 tgcgctgcac aggacgagta gaagccagac cgcctcgtcg acgagcttcg agcagcgcga 1141 ctacgtcatc cgggagctaa tcgacacgga gtctaactat ctggacgtgc tcaccgccct 1201 gaagaccaag ttcatggctc cgctggagcg gcatctcaat caggacgagc tgcgtctcat 1261 attcccgcgc attcgagaac tggccgacat tcacacaaag ttcctggaca agctgcgcga 1321 atcgctgacg ccgaatgcca aaatgaaaat ggcccaggtc ttcctcgagt tccgcgagcc 1381 cttcctcatc tacggcgaat actgctcctg cctgctgggc gccatcgact atctggcgga 1441 tgtgtgcaag aagaaccaga taatcgacca gctggtgcag aaatgcgagc gggactacaa 1501 tgtgggcaag ctgcagctgc gcgacatcct ctcggtgccg atgcagcgca tcctcaagta 1561 ccatttgctg ctggacaagc tggtgaagga gacgtcgccg ctgcacgacg actaccgatc 1621 gctggagcgg gccaaggagg ccatgatcga tgtgtcgcag tatatcaacg aggtgaagcg 1681 cgactccgac catctggtca tcatacagaa ggtgaaggac agcattttcg atctgaatct 1741 gctgcagaat ggcaacggca gcgatttgct gcagtacgga cgccttctcc tcgacggcga 1801 gctgcacatc aaggcgcacg aggatcagaa gaccaagctg cgctacgcct tcgtcttcga 1861 caagatcctc atcatggtga aggcgctgca catcaagaca ggcgacatgc agtacacgta 1921 ccgcgactcg cacaacctgg ccgactatcg ggtggagcag agccattcgc gccggactct 1981 gggcagggat acgcgcttca agtaccagct gctgctggcc cgcaaatcgg gcaaaacggc 2041 cttcacattg tacctcaagt cggagcacga acgggataag tggcgcaagg ccctcaccga 2101 agccatggaa agcctggaac cgcccggctg ccggagtacc gaccacaaaa tggagatcta 2161 caccttcgat gcgccgacga cgtgccgcca ctgctcgaaa ttcctcaagg gccgcatcca 2221 ccagggctat cggtgcaagg tgtgccagat aagcgtgcac aagggctgca tctcgtcgac 2281 ggggcgctgc aaacagaatc cggttagcgt gccgccgccc gtctgcgatc gtcagctgtc 2341 cgagtttaac tggtttgcgg gcaacatgga ccgggagacg gcggcccatc ggctggagaa 2401 ccgtcgcata ggcacctatc tgctgcgcgt tcgaccccag ggaccgtcca ccgcccacga 2461 gacgatgtac gcgcttagcc tgaaaaccga tgatcatgtc attaagcaca tgaaaatcaa 2521 ccaggagaac tccggcgatt ccatgctcta ttgcctgtcc tcgcgcaggc atttcaagac 2581 cattgtcgag ctggtttcct actacgaacg caacgatctg ggggagaact ttgcggggct 2641 caatcagtca ctgcagtggc cctacaagga ggtgatcgcc accgctctct atgattacga 2701 gccaaaggcc ggcagcaatc agctgcagct gcgcaccgac tgccaggtgc tggtcattgg 2761 caaggatggc gacagcaagg gctggtggcg cggcaaaata ggcgacacgg tgggctactt 2821 ccccaaggag tacgtgcagg agcagaaact ggccagcgaa gagctttgat attacaatta 2881 cgaggtttac tttgcaccca aggccattac gcccgcaacg gcagccattg ctgagtcgcc 2941 aggaggagct gaagctgcca gtggaggagg aggagctgta gcccccgccg agatcagcct 3001 gatcagcagc cagagccaca gcaacaacaa ctgcagctag atcgtaccct agttaaatat 3061 gtttatttac acacatattt taaaatacaa attgttttgt tcttttttgt ttata