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LOCUS XM_017142754 3625 bp mRNA linear INV 09-DEC-2024 factor (Vav), transcript variant X1, mRNA. ACCESSION XM_017142754 VERSION XM_017142754.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142754.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3625 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3625 /gene="Vav" /note="Vav guanine nucleotide exchange factor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108058170" CDS 488..3379 /gene="Vav" /codon_start=1 /product="protein vav isoform X1" /protein_id="XP_016998243.2" /db_xref="GeneID:108058170" /translation="MASNSSSNSFGGVAGVNGDLWRECVAWLTRCKVIPPDHKAAQAD AEIRILAMTLRDGVLLCNLVIHLDPSSMDPREFNRKPQMAQFLCSKNIKLFLDVCHNN FGIRDADLFEPTMLYDLTNFHRVLITLSKLSQCRKVQQMHPDLVGFNLQLSPSERSHS DEAIYKDLHSTDLSMRKASSIDAASASSSAEYYDRTSQSGSLDENSDITIENGTEDTD DYIEDSLSNMCDSTIENDLLEDAGVETPLLADCDGGSLRALSFDLTLDVVNSDASNAV TPTPESYAAALGDTAPTAAAAAAASGIPPMGRLVSTTSSSSSSLLVSESQRLQKAAAA VYNYRSSMASTEHEYAYIYSEDDEKVYEDLCYVTFQAKAKKPETASSTSFEQRDYVIR ELIDTESNYLDVLTALKTKFMAPLERHLNQDELRLIFPRIRELADIHTKFLDKLRESL TPNAKMKMAQVFLEFREPFLIYGEYCSCLLGAIDYLADVCKKNQIIDQLVQKCERDYN VGKLQLRDILSVPMQRILKYHLLLDKLVKETSPLHDDYRSLERAKEAMIDVSQYINEV KRDSDHLVIIQKVKDSIFDLNLLQNGNGSDLLQYGRLLLDGELHIKAHEDQKTKLRYA FVFDKILIMVKALHIKTGDMQYTYRDSHNLADYRVEQSHSRRTLGRDTRFKYQLLLAR KSGKTAFTLYLKSEHERDKWRKALTEAMESLEPPGCRSTDHKMEIYTFDAPTTCRHCS KFLKGRIHQGYRCKVCQISVHKGCISSTGRCKQNPVSVPPPVCDRQLSEFNWFAGNMD RETAAHRLENRRIGTYLLRVRPQGPSTAHETMYALSLKTDDHVIKHMKINQENSGDSM LYCLSSRRHFKTIVELVSYYERNDLGENFAGLNQSLQWPYKEVIATALYDYEPKAGSN QLQLRTDCQVLVIGKDGDSKGWWRGKIGDTVGYFPKEYVQEQKLASEEL" misc_feature 542..892 /gene="Vav" /note="calponin homology (CH) domain found in VAV proteins; Region: CH_VAV; cd21201" /db_xref="CDD:409050" misc_feature order(545..547,557..559,746..748,752..757,764..769, 773..775,806..832,848..850,854..859,863..868,875..880, 887..889) /gene="Vav" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409050" misc_feature 1655..2179 /gene="Vav" /note="RhoGEF domain; Region: RhoGEF; pfam00621" /db_xref="CDD:459876" misc_feature 2249..2632 /gene="Vav" /note="Vav pleckstrin homology (PH) domain; Region: PH_Vav; cd01223" /db_xref="CDD:269930" misc_feature 2648..2803 /gene="Vav" /note="protein kinase C conserved region 1 (C1 domain) found in VAV proteins; Region: C1_VAV; cd20810" /db_xref="CDD:410360" misc_feature 2843..3175 /gene="Vav" /note="Src homology 2 (SH2) domain found in the Vav family; Region: SH2_Vav_family; cd09940" /db_xref="CDD:198193" misc_feature order(2882..2884,2936..2938,3017..3019,3023..3025) /gene="Vav" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198193" misc_feature order(3020..3022,3113..3115) /gene="Vav" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198193" misc_feature 3191..3352 /gene="Vav" /note="Src Homology 3 domain superfamily; Region: SH3; cl17036" /db_xref="CDD:473055" misc_feature order(3200..3202,3206..3208,3218..3220,3230..3232, 3290..3295,3332..3334,3338..3343) /gene="Vav" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212690" polyA_site 3625 /gene="Vav" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 catacgcgag gcaaagacat atcggaagtc gagtccgctc ttcctcttcg ataaacccaa 61 tattttgcaa taaaataaat tagtttttaa aactaaggca gcgagcattt tgcagccgaa 121 agcgagtcac agttttgagc gtaattcggt atttcggtgc ggcacgcggc agcgcaattg 181 gcgaccaacc gatttgggtc gcccacctat tgttgttgtg ttgtgcttgt gctttctgtt 241 ttcccttttc cgcttttcgt ttttcgcctt tcgttctgtg tatctgtgtg ttctcgttct 301 ccacattcgc attcggttca gtttgagttc accaatccaa tcgcaattgc aacaacaaca 361 acggccaact gatgagtctc aattgttttc attaacgcta cgaaagtcgc ccccttccag 421 tccagtttcc agtcacccta cccgcccctt ttggccacac ccaccccccg aaccgccacc 481 cgtcgaaatg gccagcaaca gcagcagcaa cagttttggg ggcgtggcag gcgtgaacgg 541 ggatctgtgg cgcgaatgcg tcgcctggct aaccaggtgc aaggtcatcc cgcccgacca 601 caaggccgcc caggcggacg cggagatccg catcctggcg atgaccctgc gcgacggagt 661 gctgctctgc aacctggtca tccacctgga ccccagcagc atggatccgc gcgagttcaa 721 tcgcaagcca caaatggcac agttcctgtg cagcaagaac atcaagctgt tcctggacgt 781 gtgccacaac aacttcggga tccgcgacgc cgatctcttc gagccgacga tgctgtacga 841 cctgaccaac ttccaccgcg tcctcatcac gctctccaaa ttgtcgcagt gccgcaaggt 901 gcagcaaatg catccggatc ttgttggctt caatctgcag ctgtcgccca gtgaacgttc 961 ccattcggac gaggccatct acaaggacct gcattccacg gatctgagca tgcggaaagc 1021 gagcagcatt gatgccgcct ccgcctcctc gtcggcggaa tactacgatc gaacctcgca 1081 gagcggatcg ctggacgaga atagcgacat caccatcgag aatggcaccg aggacaccga 1141 cgactacatc gaggattcgc tctccaatat gtgcgattcg accattgaga acgatttgct 1201 ggaggatgcg ggcgtggaga cgcctttgct ggccgattgc gatggtggca gtttgcgagc 1261 gctctccttt gatctcaccc tggatgtggt taactcggat gcctccaatg cggtcacacc 1321 cacgccggaa tcctatgctg ccgctttggg tgacaccgca ccaacagcag cagcggcagc 1381 ggcggcgtcg ggcattccac ccatgggccg cctggtgtcc accacctcct cctcgtcgtc 1441 gtcgcttttg gtcagcgaga gccagcgact gcagaaggcg gccgcagccg tctacaatta 1501 ccgatcctcg atggcgtcca ccgagcacga gtatgcctac atctacagcg aggatgatga 1561 gaaggtctac gaggacctgt gctacgtcac cttccaggcg aaggccaaaa aacccgagac 1621 cgcctcgtcg acgagcttcg agcagcgcga ctacgtcatc cgggagctaa tcgacacgga 1681 gtctaactat ctggacgtgc tcaccgccct gaagaccaag ttcatggctc cgctggagcg 1741 gcatctcaat caggacgagc tgcgtctcat attcccgcgc attcgagaac tggccgacat 1801 tcacacaaag ttcctggaca agctgcgcga atcgctgacg ccgaatgcca aaatgaaaat 1861 ggcccaggtc ttcctcgagt tccgcgagcc cttcctcatc tacggcgaat actgctcctg 1921 cctgctgggc gccatcgact atctggcgga tgtgtgcaag aagaaccaga taatcgacca 1981 gctggtgcag aaatgcgagc gggactacaa tgtgggcaag ctgcagctgc gcgacatcct 2041 ctcggtgccg atgcagcgca tcctcaagta ccatttgctg ctggacaagc tggtgaagga 2101 gacgtcgccg ctgcacgacg actaccgatc gctggagcgg gccaaggagg ccatgatcga 2161 tgtgtcgcag tatatcaacg aggtgaagcg cgactccgac catctggtca tcatacagaa 2221 ggtgaaggac agcattttcg atctgaatct gctgcagaat ggcaacggca gcgatttgct 2281 gcagtacgga cgccttctcc tcgacggcga gctgcacatc aaggcgcacg aggatcagaa 2341 gaccaagctg cgctacgcct tcgtcttcga caagatcctc atcatggtga aggcgctgca 2401 catcaagaca ggcgacatgc agtacacgta ccgcgactcg cacaacctgg ccgactatcg 2461 ggtggagcag agccattcgc gccggactct gggcagggat acgcgcttca agtaccagct 2521 gctgctggcc cgcaaatcgg gcaaaacggc cttcacattg tacctcaagt cggagcacga 2581 acgggataag tggcgcaagg ccctcaccga agccatggaa agcctggaac cgcccggctg 2641 ccggagtacc gaccacaaaa tggagatcta caccttcgat gcgccgacga cgtgccgcca 2701 ctgctcgaaa ttcctcaagg gccgcatcca ccagggctat cggtgcaagg tgtgccagat 2761 aagcgtgcac aagggctgca tctcgtcgac ggggcgctgc aaacagaatc cggttagcgt 2821 gccgccgccc gtctgcgatc gtcagctgtc cgagtttaac tggtttgcgg gcaacatgga 2881 ccgggagacg gcggcccatc ggctggagaa ccgtcgcata ggcacctatc tgctgcgcgt 2941 tcgaccccag ggaccgtcca ccgcccacga gacgatgtac gcgcttagcc tgaaaaccga 3001 tgatcatgtc attaagcaca tgaaaatcaa ccaggagaac tccggcgatt ccatgctcta 3061 ttgcctgtcc tcgcgcaggc atttcaagac cattgtcgag ctggtttcct actacgaacg 3121 caacgatctg ggggagaact ttgcggggct caatcagtca ctgcagtggc cctacaagga 3181 ggtgatcgcc accgctctct atgattacga gccaaaggcc ggcagcaatc agctgcagct 3241 gcgcaccgac tgccaggtgc tggtcattgg caaggatggc gacagcaagg gctggtggcg 3301 cggcaaaata ggcgacacgg tgggctactt ccccaaggag tacgtgcagg agcagaaact 3361 ggccagcgaa gagctttgat attacaatta cgaggtttac tttgcaccca aggccattac 3421 gcccgcaacg gcagccattg ctgagtcgcc aggaggagct gaagctgcca gtggaggagg 3481 aggagctgta gcccccgccg agatcagcct gatcagcagc cagagccaca gcaacaacaa 3541 ctgcagctag atcgtaccct agttaaatat gtttatttac acacatattt taaaatacaa 3601 attgttttgt tcttttttgt ttata