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LOCUS XM_017142117 8496 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017142117 VERSION XM_017142117.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142117.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8496 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8496 /gene="Ubr3" /note="Ubr3 ubiquitin ligase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108057723" CDS 961..7629 /gene="Ubr3" /codon_start=1 /product="E3 ubiquitin-protein ligase Ubr3 isoform X2" /protein_id="XP_016997606.2" /db_xref="GeneID:108057723" /translation="MDEDDNLSNADISIDDEEAAEERPQDAAMQQDQQEDDESSDVDL SSVYVLPPIVSSMPAVRISGGTTTTTTSAAAAPATAADNSHSPFHDWDSSVAAAAPPP PPPRGATAAAASSSESGAAGASGGASGPGAAASDAGAKPSFFFGASSFSLRSRKEVAA LINTECCRGSPTPDLDSIMDTLFNPGTPIDNLDNIEWIRWLIAGGRTPQEFVKIVRSY DNHAKCGLVWVPHVVAYRCRTCGISPCMSICRDCFKKGNHTNHDFNMFLSQAGGACDC GDTSVMKAEGFCSDHGINNRVNRDPVPNNLLAVAEAIMPKLLFRLLQHFREHSDTALQ VHAMTSYSCEEFANMLIDLNNMGEIMRKVMTRTLINPEVYAYFMEAPCQDTRNGRFLK ANREKYEDAVNRFPNPEPPDEYRDLPALGDKLVHTTLLEEFIFWTFKFEFPQTLVCFL LNMLPDQDYKEHLTRTFVMHYSRIPSVLEMSRDPDTLSNRVVHMSVQLFSNESLALKM VNELSLLHVMIISLKLMMSKILIQNTLHDPSKNFHFVIDCTRQVMKDHCYWPLVSDFN NVLSHESVALVFLRDDNLIDMWFQFLQMLQGMNVNVRETASHVEFEPNSYYAAFSCEL EASAYPMWSIISHLQDGTHAHLAKKIINYCVTTLHEWLDSIYFMEARLSMEEMMQASF HFPLHRYLAAFVCQAVTKMGISLNDVLPSRPYLLPLLMIHPLRVQSFFYEILAGKWVR NGLQIKGQAMTYIQANFCNSMADMDLFFLQICATNLPQYFFLQNTIELFDVGQWLETA PLKQPQKAEQSSMLEGFLTFLATLVTSRTNLGNDEATQCIIEISALLATENKTHSQLL ELMPERSGNVHTKNFETFLKKLSVYKAPSSGSENLEQGLFTPIDEVWEKHYDPLHVLL RAVHRRDFQSSLDRFTNYVKSKEKMPASGNLWPPFRLPQALPATSSFSDPCKILNSRV FHSTILSIFFRAVHTRDVSEHLLALAVFLLEIAVETSDDVGSGPGDRAPPALAAMVES SGGPGYHGYGSGRQEPPKLFQCYPTDNLSCNLRHVVKKVSLKSRDPQVITSSYRSNPF YSDLDFDVEADPESQSMRMIGHVDSEGDEATGGGGGGGGVANLGPGTLSRRNVSQALV PMRVPGMEVALPPDLSVVAETGVVIRQDSNDDELLREGDHAMDMSPAAALDFHFPLQQ ITLPESGMEVAIRRDLLLAETNNMGAIGGGGGGGGANPSATTPGVASNEMFSPTTPTG SGMLLPFQRVQPVAVPSSSVNMDIVPSNALGAGGSFTSGVSGGGGGTGRRMNYETGGA RKRSVDIAIGGSNKDELHLDESILSLLLKLHSQLSGTLDSFSLSDGEEQSQSGEDSSS MDVDCNEASTSSTALAERGRSRRKNYKNIHVSASRIGDGPFFIGNLLRKIAKQDEQCA LSIDDIRARLWPNQRERQAEAKARETKEKEERRKKARERQQKMMQDFANKQKQFMQSA AAAASSMDYGPEDEDDEELLYEEQPREKEYDCIICNCTTPSTESNPIGLVVLVESSGI VGHRRRIAERLPLPLNVEDEDRLRHSTRLAAEFGRRTELLSLKFGDESWYLSNNMAYD NGVHVQSCGHHVHLSCLEAYLKTLYTTQRQPVQDRGEFYCPVCRQLSNSVLPLSPQLD RPTHIVRSGNQPFERLVADLTDLIKENETIPPTKLTEAMGHAMEVMTNIAQRKVKYAS ITFRKLFIFVTSIARTNLEAEIIQRGGSLCSANATRYKPKRDCIVPLLHVLSVHVRVL VEWPLWSSWASLAGLPVSETEPLPAHCLELIPSLLADPIALLLKFILLAPLHLDQDYF TCMVKVMYNLLYYQIVVQLCVTLTDLECDHILKVYGSSGAESQPESAAGASGSSYNRR RAGSQQQSSSQLGKAMALVLSQTNELAHLRRDCIPSTSSSAAAAAAAGSSSASATATS SSSASSSPHEVNLKSMELQLQSLCLPFLRVAALLRQHLYRHEMPEISAPGLEFVRLVY YLELVTDSMDWDCFNASKGLCFIPGTEQTLPQFWCQQLMEVRPPADTVRELVLINQHS LWQQPRLLELPREYERLFTYYHERPCLNCYKVPKESSICLLCGTIVCLKQNCCAENDC CEAVRHTLSCGGGIGIFLVVTSTYIIVIRGRRACLWGSLYLDDFDEEDRDLKRGKPLY LSQDRFNLLESQWLSHKFAHTKHTWVFHRDLL" misc_feature 1630..1836 /gene="Ubr3" /note="UBR-box found in ubiquitin-protein ligase E3-alpha-3 (UBR3) and similar proteins; Region: UBR-box_UBR3; cd19673" /db_xref="CDD:439071" misc_feature order(1630..1632,1678..1680,1705..1707,1714..1716, 1732..1734,1780..1782,1786..1788,1822..1824) /gene="Ubr3" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:439071" misc_feature 5044..5394 /gene="Ubr3" /note="Eisosome protein 1; Region: Eisosome1; pfam12757" /db_xref="CDD:432763" misc_feature <5230..>5436 /gene="Ubr3" /note="Trichohyalin-plectin-homology domain; Region: TPH; pfam13868" /db_xref="CDD:464007" misc_feature 5794..5946 /gene="Ubr3" /note="RING finger, H2 subclass, found in ubiquitin-protein ligase E3-alpha-3 (UBR3) and similar proteins; Region: RING-H2_UBR3; cd16483" /db_xref="CDD:438146" misc_feature 6154..7575 /gene="Ubr3" /note="Proteolysis_6 C-terminal; Region: PRT6_C; pfam18995" /db_xref="CDD:465944" polyA_site 8496 /gene="Ubr3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggcccagctc taattcatat acacatacac gcgaacggac cgtgtgtgga ttcgtggagc 61 aaatcgaaat tggcaggatt aaaagcattc gcgaacgcaa aggcagcggc taaagggctg 121 cccacgcacc agagtaacta actagctggc caagaggtcc tctaatcggc gattaatatg 181 caaaaatcag cgtaattggc aagttcaatg cacgactaat atatttggtg tgccagtgtt 241 gtgtgtgcgt gtggtgtggt gtcgtgtccg tgtgtgtgtg cgtgtgcggc cgcgacgagt 301 atgtgtgcgt atattcgtat atttgcaaga ctcgcggatg aaacagcgtg aaaagtgagc 361 gaaatcggga aatcgggaaa acgggcggcc aaagaactct aaatcctcgc tctgaaaaac 421 ggacacggat gatggggata tagccccaga gccaccgcgc cacagtaggt cggttgggcg 481 acgtcgagca gcagcagcaa ggtagaaaaa aagaatcaaa catcggaaat cacaaatcaa 541 aaatcaaaag caggaacgca gctgagaagc tgagatgtca agtgtttggt gttgtgaaat 601 ttttcgtctc caactctcgg cgtagattcc ataccccccc tcccccctga cgacccagca 661 atcgaattcc ctcgcctcac ctgtcaaaat tttcaattga acgcaactct gccataaaca 721 aaaaaaaaga aataaaagtt aaattcgggc actagccaaa caacaaaaag aaaaaaatca 781 cgcagcaaag aagaagcagc agcagcagca gccgaaaaaa aagacgaaaa gaaaacttgt 841 ttgaaaaagg ccgaaacgaa agaaaaaaaa gagcagcagc agcagcagcg gcagcggcag 901 caagaacgga tcaccggatc ggagcggcga cgtcaccaaa agatacgcca ccatatcacc 961 atggacgagg atgacaacct gtccaatgcc gacatcagca tcgatgacga ggaggcggcg 1021 gaggagcgcc cgcaggatgc ggccatgcag caggatcagc aggaggatga cgagtcctcc 1081 gatgtggatc tctcctcggt ctacgtcctc ccgcccatag tctcctccat gccagcagtg 1141 cgcatcagtg gaggaaccac caccacgacc accagtgcag ctgcagctcc agccaccgcc 1201 gccgataact cgcattcccc cttccacgac tgggattcca gtgtggcggc cgctgctcct 1261 ccgccaccgc cgcccagggg agcaactgca gcggcggcat ctagttcgga atctggagca 1321 gcaggagcat ctggaggagc atctggacca ggagcagcag ccagcgatgc cggggccaag 1381 ccgagcttct tcttcggcgc ctcctccttc agcctgcgca gccgcaagga ggtggccgcc 1441 ctgatcaaca ccgaatgctg ccgtggcagc cccacgcccg atctcgactc catcatggac 1501 accctcttca atccgggcac gcccatcgac aatctggaca acatcgagtg gattcgatgg 1561 ctcattgccg gcggacggac gccgcaggaa tttgttaaaa ttgtgcgcag ctatgacaac 1621 cacgccaagt gcggactggt gtgggtgccc catgtggtgg cctacaggtg ccgcacctgc 1681 ggcatctcgc cctgcatgtc gatatgccgg gactgcttca agaagggcaa ccacacaaac 1741 cacgacttca atatgttcct gtcgcaggcg ggcggtgcct gcgattgtgg cgacacctcg 1801 gtcatgaagg cggagggctt ctgcagcgat catggaatca acaaccgggt caaccgagat 1861 cccgtgccca ataatctgtt ggcggtggcc gaggccatta tgcccaagct cctgttccgc 1921 ctgctgcagc acttccgcga gcacagcgac accgcgctgc aggtgcacgc gatgacctcg 1981 tactcgtgcg aggagttcgc caacatgctg atcgatctga acaacatggg cgagataatg 2041 cgcaaggtga tgacgcgcac gctgatcaat ccggaggtct acgcctattt catggaggca 2101 ccatgccagg acacacggaa cggacgattc ctgaaggcaa atcgggagaa gtacgaggat 2161 gccgtcaaca gattccccaa cccagagcca cccgatgagt acagggatct gccggcgctg 2221 ggagacaagc tggtgcacac cacgctcctc gaggagttca tcttctggac attcaagttc 2281 gagttcccac agacgctggt ctgtttcctg ctcaacatgc tgcccgatca ggattacaag 2341 gaacacctca cccgcacatt tgtgatgcac tacagtcgca taccgtcggt gctggaaatg 2401 tcccgcgatc ccgacacgct cagcaaccgc gtggtccaca tgagcgtcca gctcttctcc 2461 aacgaaagtc tggccctcaa gatggtcaac gagttgtcgc tgctgcacgt gatgatcatc 2521 agtctcaagc tgatgatgtc caagatactc atacagaata cgctgcatga tcccagcaag 2581 aatttccact ttgtcatcga ctgcacgcgt caggtgatga aggaccactg ctactggccg 2641 ctagtctccg acttcaacaa cgtcctatcg cacgaatcgg tggccctggt ctttttgcgg 2701 gacgacaacc tgatcgacat gtggttccag tttctgcaga tgctccaggg catgaatgtc 2761 aatgtgcggg agacggcttc ccatgtggaa ttcgagccga atagctatta tgccgcgttc 2821 tcctgcgaac tggaggccag cgcctatccc atgtggtcga ttatctcgca cctgcaggac 2881 ggaacgcatg cccacctggc caagaagatc atcaactact gtgtgacgac gctgcacgag 2941 tggctggact ctatttactt catggaggcg cgtctatcga tggaggagat gatgcaggcc 3001 tcgttccact ttccactgca tcggtatctg gccgccttcg tctgccaggc ggtcaccaaa 3061 atgggcataa gtctgaacga cgtgctgccc tcgcggcctt atctcctgcc cctcctgatg 3121 atccatccgc tgcgtgtcca gagtttcttc tacgagatcc tggccggcaa atgggtgcgc 3181 aacggactgc agatcaaggg ccaggcgatg acgtacatcc aggcgaactt ctgcaactcg 3241 atggcggaca tggacctgtt cttcctgcag atctgcgcca ccaacctgcc gcagtacttc 3301 ttcctgcaga acaccatcga gctcttcgac gtgggccagt ggctggagac ggcgccgctg 3361 aagcagccgc agaaggcgga gcagtcctcg atgctcgagg gcttcctcac cttcctggcc 3421 accttggtga cgagtcgcac gaacctgggc aacgacgagg ccacccagtg catcatcgag 3481 atcagcgccc tgctggccac cgagaacaag acgcattcgc agctcctcga gctgatgccc 3541 gagcgatcgg gcaatgtgca caccaagaac tttgagacct tcctgaagaa gctctccgtc 3601 tacaaggctc cgtcgagtgg gagcgagaac ctggagcagg gtctcttcac gcccatcgac 3661 gaggtgtggg agaagcacta cgatccgctt cacgtcctcc tgcgagcggt ccatcggcgg 3721 gacttccaat cctcgctgga tcgcttcacc aactatgtga agagcaaaga gaagatgccg 3781 gcgagtggaa atctctggcc accgttccgc ctgccgcagg ctctgcccgc caccagctcg 3841 ttcagtgatc cctgcaagat tctcaactcg cgcgtctttc actccaccat tctgtcgata 3901 tttttccgtg ccgttcacac gcgtgatgtt tcggaacatc tgcttgcatt ggccgtattt 3961 ctactggaga ttgccgtgga gacgagtgac gatgtgggca gtggtcccgg tgatcgtgct 4021 ccgcctgccc tggctgccat ggtggagtcg tcgggcggac cgggctacca tggctacggt 4081 tcgggtcgcc aggagccgcc caagttgttc caatgctatc ccacggacaa tctcagctgc 4141 aatctgcggc atgtggtcaa gaaggtgtcg ctcaagtcac gcgatccgca ggtgatcacc 4201 tcgagctatc gctccaatcc gttctactcg gatctggact ttgatgtcga ggcggatcca 4261 gagtcgcaat cgatgcgcat gataggccac gtggactccg agggagatga ggccaccggc 4321 ggtggcggtg gtggtggtgg cgtcgctaat ctgggaccgg gaaccctcag tcgcaggaat 4381 gtctcgcagg ctttggtgcc gatgcgtgtg cctggcatgg aggtggctct gccgccagat 4441 ctttccgtgg tcgccgaaac gggcgtggtg atccggcagg acagcaatga cgatgagctg 4501 ctgcgcgagg gcgatcatgc catggacatg agtccggcgg cagccctcga tttccatttc 4561 ccgctgcagc agattacgct gcccgaaagc ggaatggagg tggccattcg gcgggatctt 4621 ctcctcgccg agaccaataa tatgggggcc atcggagggg gaggcggagg cggaggagcc 4681 aatccttcgg ccacaacacc cggcgtggcc tccaacgaga tgttctcacc caccacgccc 4741 acgggcagcg gtatgctgct gcccttccag cgggttcagc ccgtcgcggt gccctcaagt 4801 agcgtcaaca tggacattgt gccctcgaat gccctgggcg ccggcggaag cttcacctcg 4861 ggcgtgagtg gcggcggcgg cggcacggga cgcaggatga actacgagac gggcggagcg 4921 cgcaagcgat cggtggacat tgccatcggc gggagcaaca aggatgagtt gcatttggac 4981 gagagcattc tgtcgctgct gctcaagctg cattcccagc tctcgggcac cctggatagc 5041 ttctcgctga gcgacggcga ggagcagtcg cagtctggcg aggattcttc ctccatggat 5101 gtggactgca acgaggcgag cacctcgagc accgctttgg ccgaacgagg acgcagcagg 5161 cgcaagaact acaagaacat ccatgtatcc gcctcgcgca tcggcgacgg gcccttcttc 5221 attggcaacc tgctgcgcaa gatagccaag caggatgagc agtgcgccct cagcatcgac 5281 gacatccggg cgagactctg gcccaatcag cgcgagcggc aggcggaggc gaaggcgcgc 5341 gagaccaagg agaaggagga gcgacgcaag aaggcgcgcg agcgacagca gaagatgatg 5401 caggactttg ccaacaagca gaagcagttc atgcagtccg ccgccgcggc ggccagcagc 5461 atggactacg ggccggagga cgaggatgac gaggagctgc tgtacgagga gcagccgcgc 5521 gagaaggagt acgattgcat catctgcaat tgcacaacgc cgagcaccga atcgaatccc 5581 atcggcctgg tggtgctggt cgagtccagc ggcattgtgg gccatcggcg gcggatcgcc 5641 gagcgactgc cgctgccgct gaatgtggag gatgaggatc ggctgaggca cagcacccga 5701 ctggccgccg agtttggtcg gcgcaccgag ctgctgagcc tcaagttcgg cgacgagtcg 5761 tggtatctgt cgaacaatat ggcctacgac aatggggtgc atgtgcagtc gtgcggccac 5821 cacgttcatc tcagctgcct ggaggcgtac ctcaagacgc tgtacaccac ccagcggcag 5881 ccggtgcagg atcgcggcga gttctactgt cccgtctgcc ggcagctttc caattcggtg 5941 ctgccgctca gtccgcagct ggacaggccc acgcacattg tgcgatcggg caatcagccc 6001 ttcgagcgcc tcgtcgccga cctcaccgat ctgatcaagg agaacgaaac gataccgccc 6061 acaaaactaa ccgaggccat gggccatgcc atggaggtga tgaccaacat agcccagcgc 6121 aaggtcaagt acgcctcgat cacgttccgc aagctgttca tcttcgtcac ctcgatagcg 6181 cgcacgaatc tcgaggcgga gatcatccag cggggcggct cgctctgctc ggcgaacgcg 6241 acgcgctaca agccgaagcg ggactgcatt gtgccgctgc tgcacgtgct ttcagtgcat 6301 gtgcgcgtcc tggtcgagtg gccgctgtgg agcagctggg cctcgctggc cggcctgccg 6361 gtgagcgaaa cggagccgct gccggcgcac tgcctcgagc tgattcccag cctactggcc 6421 gatcccattg cgctgctgct caagtttatt ctgctggctc cgctccactt ggatcaggac 6481 tacttcactt gcatggtgaa ggtgatgtac aacctgctgt actaccagat tgtcgtccag 6541 ctgtgcgtca cgctcaccga cctggagtgc gatcacattc tcaaagttta cggcagcagt 6601 ggcgctgaat cgcagccaga atccgctgcc ggagcctcgg gcagctcgta caatcgtcgc 6661 cgtgctggca gccagcagca gagctcctcg cagctgggca aggccatggc cctggtgctc 6721 agccagacca acgagctggc tcacctgcga cgggattgca tacccagcac cagcagctcg 6781 gcggcggcag cagcggcagc tggctcatcc tccgcctcgg caacagctac ctcctcctcc 6841 tccgcatcct cctcgccgca cgaggtcaac ctcaagtcca tggagctgca gctgcagtcg 6901 ctttgcctgc ctttcctgcg cgtggccgcc ctgctgcgcc agcatctcta tcgccacgag 6961 atgccagaga tctcggcgcc tgggctggag tttgtgcgtc tggtctacta cttggaactg 7021 gtcaccgatt cgatggactg ggattgcttc aatgccagca agggactgtg cttcataccc 7081 ggcaccgagc aaacgctgcc gcagttctgg tgccagcagc taatggaagt gcgtccgccg 7141 gcggatacgg tcagggaatt ggtgctcatc aatcagcact cgctgtggca gcagccgcga 7201 cttcttgagc tgccgcgcga gtacgaacgc ttgttcacgt actaccacga acgaccgtgc 7261 ctcaactgct acaaagtgcc caaggagagc tccatctgcc tgctgtgcgg gacgatcgtg 7321 tgcctcaagc agaactgctg tgcggagaac gactgctgcg aggctgtgcg gcatacgctt 7381 tcgtgtggcg gcggcattgg catcttcttg gtggtcacct ccacgtacat catcgttatc 7441 cgcggacgac gagcctgcct ctggggttca ctctatctgg acgactttga tgaggaggat 7501 cgcgatctca agcgcggcaa gcctttgtat ttgagccaag atcgcttcaa cctgctcgag 7561 tcgcagtggc tgtcccataa gtttgctcac acaaaacaca cctgggtgtt ccaccgggat 7621 ctcttgtgaa atatggaaga tctactgcgc agcatccagg agttggttgg ccagatctga 7681 gatgcccgat gggatgcccg gccgctcctc gcctagtcga accagtcaac cacccgcaac 7741 tgacacaaat ccaaaatccc acaccccttt tgtcccctta ttttaagcga gtttcgctgt 7801 tgtttcggag cttcttgacg cggaggagga gtagtaggac acccgaccac gttctgtccg 7861 ctttcccttt gggtatccaa gtccgtatac gcatccgcat ccctccccca acacacagcc 7921 cccaacgcac ctagaagcaa catcggcaat ttgcaattaa ttgatattac acacacattt 7981 ttatatataa acaatactta taaatatgga tgcaaaacga aaaaccacag ctaaaagatt 8041 atttcttgtt caactgagaa gcgcgcctaa taatccaaaa tccgactaat ctcgcgagga 8101 tcatgaatat ttaacaagct ataaatattt aaatatgcac ccgaagacga agaataaaac 8161 ccgaagataa atcgaaattt aagcaccgcg cgggtctctc tagttgcgtt ctacctaaac 8221 taagtcttaa gtccctaact ttataggttt ttttttttag gaaaacaaag gcaagaagga 8281 aaataacaat ttaacgaatg taacacaaca cacacgatat aaataacaat tgtctacttt 8341 ggcctcatga gtttgtgcat gtaaaaaatg aaaaaaacga ttatatagtt aatatatata 8401 aatacaatat acactaaaat taatgctaca aaaacgacaa aaaaaaaata tttaaaaaaa 8461 aaaccaataa acgaaaagcg aattgtgaaa tgcgta