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LOCUS XM_017140751 3716 bp mRNA linear INV 09-DEC-2024 variant X5, mRNA. ACCESSION XM_017140751 VERSION XM_017140751.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140751.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3716 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3716 /gene="Actn" /note="alpha actinin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:108056774" CDS 220..2907 /gene="Actn" /codon_start=1 /product="alpha-actinin, sarcomeric isoform X2" /protein_id="XP_016996240.1" /db_xref="GeneID:108056774" /translation="MMMENGLSMEYGDGYMEQEEEWEREGLLDPAWEKQQKKTFTAWC NSHLRKAGTAIDNIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDF IASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRK TAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLSKDNPLENLNTAFDVAEKY LDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQAETAANRICKVLKVNQENE RLMEEYERLASDLLEWIRRTMPWLNSRQADNSLAGVQKKLEEYRTYRRKHKPPRVEQK AKLETNFNTLQTKLRLSNRPAYLPTEGKTVSDISNSWKGLELAEKAFEEWLLAETMRL ERLEHLAQKFKHKADAHEDWTRGKEEMLQSQDFRQCKLNELKALKKKHEAFESDLAAH QDRVEQIAAIAQELNTLEYHDCVSVNARCQRICDQWDRLGALTQRRRTALDEAERILE KIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIQAHDQFKATLGEADK EFNLIVNLVREVESIVKQHQIPGGLENPYTTLTANDMTRKWSDVRQLVPQRDQTLANE LRKQQNNEMLRRQFAEKANIVGPWIERQMDAVTAIGMGLQGSLEDQLHRLKEYEQAVY AYKPNIEELEKIHQAVQESMIFENRYTNYTMETLRVGWEQLLTSINRNINEVENQILT RDSKGISQEQLNEFRSSFNHFDKNRTGRLSPEEFKSCLVSLGYSIGKDRQGDLDFQRI LAVVDPNNTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAADKPYILPDELRRELP PDQAEYCIQRMPPYKGPNGVPGALDYMSFSTALYGETDL" misc_feature 310..624 /gene="Actn" /note="first calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt1; cd21214" /db_xref="CDD:409063" misc_feature order(325..327,337..339,469..471,481..489,496..501, 544..570,592..594,598..603,610..615,619..624) /gene="Actn" /note="actin binding site [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature order(370..372,376..378,448..456) /gene="Actn" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature 634..975 /gene="Actn" /note="second calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt2; cd21216" /db_xref="CDD:409065" misc_feature order(664..666,676..678,817..825,832..837,880..906, 937..939,943..948,955..960,964..969) /gene="Actn" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409065" misc_feature 1057..1728 /gene="Actn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1411..2094 /gene="Actn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1411..1428 /gene="Actn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1726..1743 /gene="Actn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1765..2433 /gene="Actn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 2089..2106 /gene="Actn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 2476..2679 /gene="Actn" /note="EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to...; Region: EFh; cd00051" /db_xref="CDD:238008" misc_feature order(2503..2505,2509..2511,2515..2517,2536..2538, 2626..2628,2632..2634,2638..2640,2659..2661) /gene="Actn" /note="Ca2+ binding site [ion binding]; other site" /db_xref="CDD:238008" misc_feature 2692..2892 /gene="Actn" /note="Ca2+ insensitive EF hand; Region: EFhand_Ca_insen; pfam08726" /db_xref="CDD:430177" polyA_site 3716 /gene="Actn" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttcagagttg gcagctggct ggcgcgacat cagttttgag ttggctatca acgcgagcgg 61 gtctttctct tcgcaagcga cacaccagca gcaactggat caccagcaac aacagcagca 121 ccaccaccag aagcagcgag agcgagagag agtgcagcgg gacagggaac gagctagata 181 tatacaacga gcgagcggga cttctgagag cgccacaaga tgatgatgga gaacggactc 241 tccatggagt acggagatgg gtacatggag caggaggagg agtgggagcg cgagggcctt 301 ctcgaccctg cgtgggagaa gcaacagaag aagacattta ccgcctggtg taacagtcat 361 ctgcgcaaag ccggcaccgc catcgacaac atcgaggagg acttccgcaa cggcctcaag 421 ctgatgctgc tgctggaggt gatctccggc gagacgctgc ccaagcccga tcgcggcaag 481 atgcgcttcc acaagatcgc caacgtgaac aaggctctcg acttcatcgc ctccaagggc 541 gtccacctgg tgtccattgg cgccgaggag atcgtcgatg gcaacctgaa gatgaccctg 601 ggcatgatct ggacgatcat cctgcgcttc gccatccagg acatctccgt ggaggagatg 661 accgccaagg agggtctgct gctgtggtgc cagcgcaaga cggctcctta caagaacgtc 721 aacgtacaga acttccatct gtcgttcaag gatggtctgg ccttctgcgc cctcatccat 781 cgccatcgtc cagatcttat cgactacgcc aagctgtcca aagacaatcc tctggagaat 841 cttaacactg ccttcgatgt ggccgagaag tatctggata ttccgcgcat gttggatcca 901 gatgatttga tcaacactcc gaaaccggat gaacgtgcca tcatgacgta cgtctcctgc 961 tactaccacg ccttccaggg agcccaacag gcggaaaccg ctgccaaccg catctgcaag 1021 gtgctcaagg tcaaccagga gaacgagcgc ctcatggagg agtacgagcg tctggccagt 1081 gatttgctgg agtggatccg ccgcaccatg ccgtggctga actcccgcca ggcggacaac 1141 tcgctggcgg gcgtgcagaa gaagctggag gagtaccgca cctaccggcg caagcacaag 1201 ccgccacgcg tcgagcagaa ggccaagctg gagacgaact tcaacacgct gcagaccaag 1261 ctgcgcctgt ccaaccggcc cgcctacctg cccaccgagg gcaagaccgt ctcggacatc 1321 tccaactcgt ggaagggcct cgagctggcc gagaaggcct tcgaggagtg gctgctcgcc 1381 gagaccatgc gcctggagcg cctcgagcat ctggcccaga agttcaagca caaggccgat 1441 gcccacgagg actggacgcg cggcaaggag gagatgctgc agtcgcagga cttccgccag 1501 tgcaagctca acgagctgaa ggccctcaag aagaagcacg aagcctttga gtctgacctg 1561 gccgcccacc aggatcgcgt cgagcagatc gccgccatcg cccaggagct gaacaccctg 1621 gagtaccatg actgcgtgtc ggtgaacgcc aggtgccagc gcatctgcga ccagtgggac 1681 cgcctgggcg ccctcaccca gcgcaggcgc accgctttgg acgaggccga gcgcattctg 1741 gagaagatcg acatcttgca tttggagttc gcgaagcggg cggcgccgtt caacaactgg 1801 ctggacggga cgcgcgagga tctggtcgac atgttcatcg tgcacaccat ggaggagatc 1861 cagggcctga tccaggcgca cgaccagttc aaggcgacgc tgggcgaggc cgacaaggag 1921 ttcaacctga tcgtgaacct ggtccgcgag gtggagtcga ttgtgaagca gcaccagatc 1981 cccggcggcc tggagaaccc ctacaccacg ctgaccgcca acgatatgac gcgcaagtgg 2041 agcgacgtcc gccagctggt ccctcagcgc gaccagacgc tggccaacga gctgcgcaag 2101 cagcagaaca acgagatgct gcgccgccag ttcgccgaga aggccaacat tgtcggcccc 2161 tggatcgagc ggcagatgga cgcggtgacg gccatcggca tgggactgca gggatcgctg 2221 gaggaccagc tgcaccggct caaggagtac gagcaggccg tctatgccta caagccgaac 2281 atcgaggagc tggagaagat ccaccaggcg gtgcaggagt cgatgatctt cgagaaccgt 2341 tacaccaact acacgatgga gacgctgcgc gtcggctggg agcagctgct cacctcgatc 2401 aaccgcaaca tcaacgaggt ggagaaccag atcctcaccc gcgactccaa gggcattagc 2461 caggagcagc tgaacgagtt ccgcagcagc ttcaatcact tcgacaagaa ccgcaccggc 2521 cgcctgtcgc ccgaggagtt caagtcgtgc ctcgtctcgc tgggctactc gatcggcaag 2581 gatcgccagg gcgacctcga cttccagcgc atcctcgcgg tcgtcgatcc gaacaacact 2641 ggctacgtgc acttcgacgc cttcctcgac ttcatgaccc gcgagagcac cgataccgac 2701 actgccgaac aagtgatcga ctcgttccga atcctggcag ccgataagcc atacattttg 2761 cccgacgaac tgcgccgcga gttgccccca gaccaggccg agtactgcat ccagcgcatg 2821 ccgccctaca agggacccaa cggagtgccc ggcgccctgg actacatgtc cttcagcaca 2881 gctctctacg gcgagaccga cttgtaggag cacctgggcc tgggcatcga ggcaccaccc 2941 ggatccgagc agagccagat catataataa tgataacctt taataataat aatattaata 3001 aacatagatt tattatacct acactcgtaa cggtagctgc agaagaactt cagagcatca 3061 tgtgaggatg aatatattta ttaatttccg tctcgagccg atgtatgcga cccacacata 3121 caacatacaa caaaaaacaa aagtgaaaaa caagaaatta tgaaatgaaa cacacacgta 3181 catcaaatac atttgtaaaa cagcaaggca accatcaagt gcatatcgaa tatttaaatc 3241 taattctaaa caccaagtcc aaaacaaaac aaacaaacaa aaacatcaac aaaacgctaa 3301 aaacattatt ttttgaaatt tatgttaata aaaacaaaat ccatacataa aaaccaaaaa 3361 caaatgaaat cgccaaatcc gaaagagatt actttctttg aaataaaaac ataaatactg 3421 agggggaggg agatagccaa acaaagtggc gaaacttgag actacttccg cttccgttta 3481 cgaaccttca agaaccagat agacagagac ggcaatactg ctagagacag agagagatag 3541 agagagacca ctacacgaaa gaaagagttc tgttctatat tcacacaatt actatagcta 3601 tttattcatc gacaatttca gaacattagc tttcgcttat ctcgaatata ttcacatttt 3661 cagaacattt tacacaactc agataacgaa tgatgaataa agcgatttct tggtga