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LOCUS XM_017140707 2608 bp mRNA linear INV 09-DEC-2024 (Rhp), transcript variant X5, mRNA. ACCESSION XM_017140707 VERSION XM_017140707.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140707.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2608 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2608 /gene="Rhp" /note="GTP-Rho-binding protein rhophilin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056740" CDS 217..2382 /gene="Rhp" /codon_start=1 /product="rhophilin-2-A isoform X2" /protein_id="XP_016996196.3" /db_xref="GeneID:108056740" /translation="MFNLGAMDGKTDELAQRAGKNEENEDDEKLNELSFCFVRGSDPR AATCRSKLQNRRCKLNKEINKELRLRAGAENLYKATSNRKLRDTVALELSFVNSNLQL LKEQLAELNSSVEIYQSESHNGIMPMIPLGLKETKEINFMEPFSDFILEHYSEEPSMY IDAIADMTDTRQASKTPSRDALGVALLFRYYNTLYYVERRFFPPDRNLGVYFEWYDSL TGVPSCQRTIAFEKACTLFNLGGIYTQIGARHDRTTERGLDLAVDSFLRAAGIFRHIY DTFTNAPSMDLKPQVLDVLVSLMLSQARECLFEKLQLQIEAIGLSEFSCSFRDLAGEA AQISHEYNEMHKNIQANDTHTYLPECWAGLVPVKAELYKAFAHFYKARSIDATDEIKV SRNQDKLSTESFIGNSQEVESNFGTSEEAATSNANKLAHLKEALASIEEAQRLQRMCR YLKNKSSLTEVMKEVHSKSQEELDRFRLQASANNIEEGDLLERVVEASSKFTLSLTGP DFTSHKVKDPFKRLGPIAIFSARRHWTAPRCVRLQKGSSSYHNVPANNRCPLDNDDEE HDGGFNLYKEEFENFGFHVRGDAPVIIAHVEINSLADLGGIKEGDFIVEIAGMDVKWY SHQQVVQLIQSCGSALELRVITPMDRNYLKPLSSKGSLSTLSAASSSGISSGFPSPTS IAAKPKLHLKTSSSSRAAGSVSSSSWNPFRRTPSLAKIF" misc_feature 334..588 /gene="Rhp" /note="Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Rhophilin-1; Region: HR1_Rhophilin-1; cd11633" /db_xref="CDD:212023" misc_feature order(385..387,394..396,403..408,415..420,424..429, 436..441,445..450,493..498,505..507,514..519,526..528) /gene="Rhp" /note="putative Rho binding site 1 [polypeptide binding]; other site" /db_xref="CDD:212023" misc_feature order(409..414,418..423,430..435,439..444,451..456, 478..483,487..489) /gene="Rhp" /note="putative Rho binding site 2 [polypeptide binding]; other site" /db_xref="CDD:212023" misc_feature 598..1773 /gene="Rhp" /note="Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains; Region: BRO1_Rhophilin; cd09244" /db_xref="CDD:185767" misc_feature order(943..945,952..954,991..993,1000..1005,1135..1137, 1144..1149,1192..1194,1201..1206,1723..1725,1729..1731, 1735..1737,1741..1743) /gene="Rhp" /note="putative ESCRT-III binding site; other site" /db_xref="CDD:185767" misc_feature 1957..2151 /gene="Rhp" /note="canonical PDZ domain; Region: PDZ_canonical; cl49608" /db_xref="CDD:483948" misc_feature order(1957..1974,1996..1998,2005..2007,2092..2094, 2104..2106,2113..2118) /gene="Rhp" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467153" polyA_site 2608 /gene="Rhp" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttagacttt acggtggttc ggaaactcgt acctggcgct atagttgtcg aaaggtaaca 61 gtaacctgtt gctttttttt tggtaatagt ggaaagtgta gtgaagacaa gtcaacatag 121 ctgatattaa gctgaaatgc tgtccagcca gtgctaaaaa tattacgttt accaaaatag 181 tataaacact taagaggact cccatcggat ctccgaatgt ttaatcttgg agccatggat 241 gggaaaaccg atgaactggc ccagagagct gggaaaaatg aggagaacga ggatgacgag 301 aagctgaatg agttatcctt ctgttttgtt cggggttccg atcccagagc ggcaacatgt 361 cgtagcaaac tgcaaaacag gcggtgcaag ttgaacaaag agattaacaa ggaactccgc 421 ttaagagctg gtgctgagaa tctatataag gccacatcca accgaaagtt acgagacaca 481 gttgccttgg aactgagctt tgtcaattca aatttgcaat tgctgaagga gcagctggct 541 gagttgaatt cctcggtgga aatctatcag agtgaaagtc acaatggcat tatgcccatg 601 ataccactgg gcttgaagga aaccaaggag attaacttta tggaaccgtt ttccgacttc 661 attttggaac actacagcga agagccctcg atgtacatag atgccatagc ggatatgaca 721 gatacgagac aggcctccaa aacgccatca cgtgacgccc tcggggtggc gctacttttc 781 cgctactaca acacactgta ctacgtggag cgtcgcttct ttccgcccga tcgcaatttg 841 ggtgtctact tcgagtggta cgactccctg acgggcgttc cctcgtgcca gcgcaccatt 901 gccttcgaga aggcctgcac cctgttcaat ctggggggga tatacaccca gatcggggcc 961 cggcatgatc gcaccaccga aaggggtctc gatttggccg tggatagctt tctccgggca 1021 gcagggatct tccgtcacat ctacgataca ttcacgaatg ccccttcgat ggatctgaag 1081 ccgcaggtcc tcgatgtcct tgtctcgctg atgctctccc aggcacgcga gtgtctcttc 1141 gagaagttgc agctgcagat cgaggcgata ggtctctccg aattcagttg ctcgtttcgg 1201 gatttggccg gagaggctgc ccagatatcg cacgagtaca atgagatgca caagaatatc 1261 caggcgaacg atacgcacac atatctgccg gaatgttggg ctggtctggt gccagtcaag 1321 gcggaactct acaaagcttt tgcccatttc tacaaggcac gcagcataga tgcgacggac 1381 gagatcaagg tgtccaggaa ccaggacaaa ttatccacgg aatcctttat cggcaactcc 1441 caggaggtgg agtccaattt tggcaccagc gaggaggccg ccacttccaa cgccaacaag 1501 ctggctcatc tgaaggaggc actggccagc atcgaggagg cccagcgatt gcagcgaatg 1561 tgtcggtacc taaagaacaa gtcatcgctc actgaggtca tgaaggaggt gcattccaag 1621 tcgcaggagg agttggatag gttcagactt caggcttcgg cgaataatat cgaagagggc 1681 gaccttctgg agcgagtcgt tgaagcttcc tcaaagttca cgttatccct gacgggaccc 1741 gatttcacct cgcacaaggt gaaggatccc ttcaagcgcc tcgggcccat tgcaatcttc 1801 tcggcgcgac gccactggac tgcgccgcga tgtgtgcgcc tgcagaaggg ttcatcctcg 1861 taccacaacg tgcccgccaa taacagatgt ccgctggaca acgacgacga ggagcacgac 1921 ggcggcttca atctgtacaa ggaggagttc gagaactttg gcttccatgt gcgcggcgat 1981 gcgccggtca taattgccca cgttgagatc aattcgctgg cagacctggg cggcatcaag 2041 gagggggact tcatagtcga gatagctggc atggatgtca agtggtattc gcatcagcag 2101 gtcgtccagc tcatccagtc gtgcggctcc gcactcgagc tgcgggtcat aacgcccatg 2161 gatcgcaact atctgaagcc tctgtcgtcg aagggctcgc tgtccacgct ctcggcggcc 2221 agctcatcgg gcatctcctc cggctttccc agtcccacga gcattgcggc caagcccaag 2281 cttcatctga aaacgtcgtc cagttcgcga gccgccggca gcgtttcgtc cagttcgtgg 2341 aatccctttc ggcgaactcc gagcttagct aaaatatttt aggtagcgac cagttttact 2401 ttgtgttttc ttggccattt cagtttagag ctaatgttag gcaataaact taattatttt 2461 ttacaaactt aatcatgcat cacgttcgtt aaattataaa cttatttaat tttcctcctc 2521 ctcttctccc accaagaaat aatctgctaa ataaaaatta actctaatca ttttattttt 2581 tgtaaataaa tcaaaataat taccttca