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LOCUS XM_017140660 4400 bp mRNA linear INV 09-DEC-2024 (Polr3A), mRNA. ACCESSION XM_017140660 VERSION XM_017140660.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140660.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4400 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4400 /gene="Polr3A" /note="RNA polymerase III subunit A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056724" CDS 99..4250 /gene="Polr3A" /codon_start=1 /product="DNA-directed RNA polymerase III subunit RPC1" /protein_id="XP_016996149.2" /db_xref="GeneID:108056724" /translation="MPKEQFRASALNKKISHVQFGISGADEIQQEALVRIISKNLYQA QRQPVPYGVLDRRMGISTKDAVCETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINI LQMICKACAHVMLKPEDRQLYEKKLHNPNFSYLGKKALHVQMLAKAKKVTKCPHCGSP NGGVKKGPGLLKILHDPYKGRKVDSLFTSNMNEMLRSTEANRDLNTALGSNYSSAEEL TPLMVLDLFEQIPQGDVALLGMCSHDAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTE DDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIPINMAP KKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTY PERVNPANMRHMRELVRNGPSLHPGANYVQQRGSSFKKYLAYGNREKVAQELKCGDIV ERHLRDEDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFDGDEMNLH LPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQ LAACFLANEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDESQVRLNMVNKGRNY TRNMDLCSNDSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGELHATKAMWRL ARIASYFLQNRGFSFGISDVTPSKKLLQHKEQLLANGYSKCNEYIEMLKAGTLQCQPG CTPEETLESVMLRELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACV GQQAISGKRVPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREG LVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVAMETR NKPVDLVHQYDNLRAQHPRGDDRPFLGAEIPEALEEVFKTPEFIESREDFKVDVRNHI GIVSKRIEQLQKRYDKCMNLCHQIECLTEGQLLQFVRRINDRYNRAVTEPGTAVGAIA AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAELENSHSM EFARQVKARIEKTTLAELSSYVEVVCGPYSCYLAIGIDMARIKLLGLHINLDTIVFSI LKSRMRVKPSQVEAVAKLSRIVVRVEATRTATINAELARLALSLQNVVVAGLPNINRA VIAVDDARQPPTYKLCIEGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIM SEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTAD HLFDAAYYGQTDAINGVSERIILGMPAGIGTGIFKLLQHHEDKQVPPIEQTISGSLNL VPTPA" misc_feature 168..2768 /gene="Polr3A" /note="Largest subunit (RPC1) of eukaryotic RNA polymerase III (RNAP III), N-terminal domain; Region: RNAP_III_RPC1_N; cd02583" /db_xref="CDD:259847" misc_feature order(297..299,306..308,327..329,336..338) /gene="Polr3A" /note="Zn-binding [ion binding]; other site" /db_xref="CDD:259847" misc_feature order(1140..1142,1155..1157,1176..1178,1194..1196) /gene="Polr3A" /note="putative active site region [active]" /db_xref="CDD:259847" misc_feature 3138..4160 /gene="Polr3A" /note="Largest subunit (Rpc1) of Eukaryotic RNA polymerase III (RNAP III), C-terminal domain; Region: RNAP_III_Rpc1_C; cd02736" /db_xref="CDD:132723" misc_feature order(3144..3149,3159..3161,3168..3170,4149..4151, 4158..4160) /gene="Polr3A" /note="Rpb1 (Rpc1) - Rpb6 interaction site [polypeptide binding]; other site" /db_xref="CDD:132723" misc_feature order(3159..3344,3357..3401,3687..3722,3747..3908, 3915..4013,4020..4022) /gene="Polr3A" /note="cleft [active]" /db_xref="CDD:132723" misc_feature order(3171..3173,3180..3182,4065..4067,4095..4103, 4119..4124,4128..4130,4134..4136,4149..4151) /gene="Polr3A" /note="Rpb1 (Rpc1) - Rpb2 (Rpc2) interaction site [polypeptide binding]; other site" /db_xref="CDD:132723" misc_feature order(3306..3308,3993..3995,4044..4049,4056..4058) /gene="Polr3A" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:132723" misc_feature order(3789..3791,3807..3812,3816..3818,3846..3866, 3870..3872,3930..3932,3963..3968,3972..3974) /gene="Polr3A" /note="Rpb1 (Rpc1) - Rpb5 interaction site [polypeptide binding]; other site" /db_xref="CDD:132723" misc_feature 4020..4145 /gene="Polr3A" /note="clamp [active]" /db_xref="CDD:132723" polyA_site 4400 /gene="Polr3A" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tctaggtcaa gaaattaaaa aaatcgtgcc gggttatttg gtttttgtaa acaaatagat 61 attagctata taaagaattt taattttaaa tcgaaaccat gcccaaggag cagtttcgcg 121 cctctgcgct gaacaagaag atctcacatg tgcaatttgg gatcagcggc gctgatgaaa 181 tccagcagga ggctctggtg cggattatct cgaagaacct ctaccaggcg cagcggcagc 241 cggtgcccta tggcgtcctc gatcgccgga tggggatcag caccaaggat gccgtgtgcg 301 agacctgcgg ccagggactg aacgagtgca tcggtcactt tggttatctg gatctcgccc 361 tgcccgtttt ccacatcggc cactttcgtt cgaccatcaa catcctgcag atgatctgca 421 aggcctgcgc ccatgtgatg cttaagcccg aggatcgcca gctgtacgag aagaagctgc 481 acaatccgaa cttctcgtat ctgggcaaga aggccctgca tgtccagatg ctggccaagg 541 ccaagaaggt gaccaaatgc ccgcactgcg gctcccccaa tggcggcgta aagaagggtc 601 ccggcctgct gaagatcctc catgatccct acaagggacg caaggtggat tcgctcttca 661 ccagcaacat gaacgaaatg ctgcgctcta cggaggccaa tcgggatctc aacacggcgc 721 tgggcagcaa ctacagctcc gccgaggagc tcacaccgct catggtgctg gatctgttcg 781 aacaaatccc ccagggcgac gtggcgctgc tgggaatgtg ctcgcatgac gcccatccca 841 agcatttgat tgtgacgcgc gtctttgtgc cgcccgcctg cattcgaccc tctgttctat 901 cggaggtgaa ggcggggacc acggaggacg acctgaccat gaagcagagc gaaatactgc 961 tgatcaacga tgtgatccaa cggcacatgg ccaccggcgg caagatcgag ctgatccacg 1021 aggactggga ctttctgcag ctgcatgtgg ccctctactt tcacagcgaa atcagcggga 1081 ttcccatcaa tatggccccc aagaagacga cgcgtggaat tgtgcagcgg ctgaagggaa 1141 agcagggacg ctttcgctgc aatctctccg gcaaaagagt ggattttagc gggcgcactg 1201 ttatttcacc ggatcccaat ctgatgatca accaggtggg cgtcccggtg cgcgtggcca 1261 agattctaac ctatccggag cgcgtgaatc ccgcgaatat gcgacacatg agggagctgg 1321 tgcggaatgg accgagtttg catccgggag cgaactatgt acagcagcga ggatcgagct 1381 ttaagaagta tttggcctac ggcaaccggg agaaggtcgc ccaggagctc aagtgcggcg 1441 atattgtgga aaggcatttg cgggatgagg atattgtgct ttttaatcgc cagccatcgc 1501 tgcacaagat gtccattatg tgccaccggg cgaaggtgca gccgcagcga acctttcgct 1561 ttaatgagtg cgcctgtacg ccctacaatg cagatttcga tggtgacgag atgaatctgc 1621 atttgccgca aacggaggag gcaagggcag aggcgttgat cctcatgggc aaccaatcga 1681 atttggtaac gccgaagaac ggcgagattc tgattgccgc cacccaggac ttcatcaccg 1741 gcggctattt gcttacccaa aaggaggttt tcctgaccaa agaggaggcc atgcagttgg 1801 cagcctgctt tctggccaac gaggactcta cgatgcacat taagctaccg ccgccggcgc 1861 ttctcaagcc gcgtcgcctg tggacgggca agcagatgtt cagcctgctc atgcgaccca 1921 atgacgagtc gcaggtgcgc ctgaatatgg tcaacaaggg tcgcaactac acaaggaaca 1981 tggatctgtg cagcaacgac tcgtggatcc acatacgcaa ctccgaactg atgtgcggcg 2041 tcatggacaa ggcgacgatg ggctcgggca ccaaacagtg catattctac ctgctgctcc 2101 gcgactttgg cgagctgcac gccaccaagg ccatgtggcg attagccagg attgcctcgt 2161 actttctgca gaaccgcggc ttctccttcg gcatcagcga cgtcacgccg agcaaaaagc 2221 tcctgcagca caaggaacag ctgctggcca atggctactc aaagtgcaac gagtatatcg 2281 agatgctcaa ggcgggcacc ctgcagtgcc aacctggttg cacgccggag gagacgctgg 2341 agtccgtgat gctgcgcgag ctgtcggcca tccgagagca ggcggccaag acatgcttcg 2401 cggagctgca tccaaccaac agcgccctga taatggcgct cagtgggtcg aagggatcga 2461 atattaacat ttcccagatg attgcctgcg tgggacagca ggccatcagc ggaaaacgag 2521 tgccgaacgg cttcgagaat cgggcactgc ctcatttcga acggcattct gccattcccg 2581 ctgccagagg cttcgtgcag aacagcttct actccggcct cacgcccacc gagttcttct 2641 ttcacacaat ggccggtcgc gagggtctcg tggatacggc tgtgaaaaca gcagagactg 2701 gctatctgca gcgtcggctg gtgaagtgcc tcgaggatct ggtcgtccac tacgatggca 2761 ccgtgcgcaa tgccgtcaac gaaatggtgg acaccattta cggcggcgat ggcctcgatc 2821 ccgtcgccat ggagacgcgc aacaagccag tcgatctggt ccatcagtac gacaatctgc 2881 gtgcccaaca tccgcgcggc gatgatcgtc cctttctggg agccgaaatt cccgaggccc 2941 tcgaggaggt cttcaaaacg ccggaattta tcgaatcccg tgaggatttc aaagtagatg 3001 ttagaaacca cattggcatt gtgtccaagc ggattgagca gctgcagaag cggtatgata 3061 aatgtatgaa cctgtgccac cagattgaat gcctaaccga ggggcaattg ctgcagtttg 3121 tgcgccggat caacgatcga tacaatcgag cggtgaccga acctggaaca gcagtgggag 3181 ctattgccgc acaaagtatt ggcgaacctg gcacccagat gacactgaaa accttccatt 3241 tcgctggcgt tgcctcgatg aacatcacgc agggtgtgcc gcgcattgtg gagattatca 3301 atgccacgaa aaccatttcg acaccgatca ttacggccga gctggagaat agccacagca 3361 tggagtttgc gcgccaggtg aaggcgcgca tcgagaagac cacgctggcc gagctctcct 3421 cgtatgtgga ggttgtttgc ggaccctaca gttgctacct ggccataggc atcgatatgg 3481 cgaggattaa gctactgggt ctgcacataa acctggacac cattgtgttt agcatactga 3541 agtcgcgcat gcgcgtgaag ccctcgcagg tggaggctgt ggcgaagctg tcgaggattg 3601 tggttcgtgt ggaggccacg cgaacggcga ccataaatgc ggagctggcg cgactggcgc 3661 tcagcctgca gaatgtcgtc gtcgctgggc tgccgaatat aaatcgagcg gttatcgccg 3721 tggacgatgc aaggcagccg cccacctaca agctgtgcat cgagggctac ggactgcgcg 3781 atgtgatcgc cacctacggc gtggtgggca agcggacgcg cagcaataat atctgtgaaa 3841 tctaccagac gctgggcatc gaggcggcgc gcacgattat aatgagcgag atcacggagg 3901 tgatggaggg gcacggcatg agcgtcgact ggcggcacat catgctcctg gccagccaga 3961 tgacggcgcg tggcgaggtg ctgggcatca cgcggcatgg gttggccaaa atgcgcgaga 4021 gcgtcttcaa tttggcatcg tttgagaaga cggcagatca cttgttcgat gccgcctatt 4081 atgggcaaac agacgccatc aatggcgttt cggagcgcat tatcctggga atgccggcgg 4141 gcattggtac gggcatcttt aagctgctgc aacatcacga ggacaagcag gtgccgccga 4201 tcgaacagac tatatccggt tccctgaatc tggtgccaac gcccgcgtag attgtttgat 4261 aactgaagtt gatgaattgg gatattatct agtttattaa atttattttg taataaaata 4321 ttaattgtaa attgtgtgtt gtgtgatttt aagaggaagt tgagagagct tattctgaaa 4381 taaatattat aatggaatta