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LOCUS XM_017140657 3969 bp mRNA linear INV 09-DEC-2024 FAK (Graf), transcript variant X4, mRNA. ACCESSION XM_017140657 VERSION XM_017140657.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140657.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3969 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3969 /gene="Graf" /note="GTPase regulator associated with FAK; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108056722" CDS 446..3478 /gene="Graf" /codon_start=1 /product="rho GTPase-activating protein Graf isoform X2" /protein_id="XP_016996146.2" /db_xref="GeneID:108056722" /translation="MGGGKNIRRGLEPLEFEECIVDSPDFRENLNRHEKELDHTSHQI KRIIKEVKDLMSAAKMLSTRMKQLAILLTDFNFECIGTAQTDDENVICESLKRFGAII GNIEDEREKMLTLADKHIIESLEDFRKKQIGGVKENKKKFDKKTEKFCQSQERFLNMS TKKPENTIQEADASLGMHEREYIQESLSYVLRIQEVQERIKFEFVEILLAFISGWLVF YHTAHEQAEDHRDYLQDLRHKVQKTRENFEEAREKVTELKTKYMEKRTKPEEIFTKRG YLFLMEKKPFKATWTKYYCTFKKQKREFTMLQFNQMNHNFTRPEARDDEKLTLFSCQR RASEFEKRFCFDLTFKEKPGVVYTFQALSEKDHRYWISAMDGTEPTYLAPGKIKVSEA YHLDEAGFMFIRRCIQVLEIRGLEDEGIYRKSGVGTKISKLLSLGLNQKETDDVFVDD KYRDLMESNTIASALKMYLRNLNEPLMTYQYHSDFIEAAKQETLNQRVNEVHKLVYKL PQPNFQMLDMVICHLTDVSRKYEKNKMSVFNLGVVFGPTLLRPREESVAAILDIKFNN IVINILIDNYERIFKNKPSADVKLPVEAAKAPSIMYPARSSPPTRMPRASQIGKAAST GAMGSTSSTAAAAAAAGNPMFLNQQKIYRVVSKSNCTEPTMSSSLQNIPNGDNYASGG AGCISLSPPMHMLNGILSPTIGSINNLHTISKNETTVGTTTAAGTRRYVPNDTAEVAT DYGIIGANNGGVTLQSHHAIPVSSTTNFRHPEYLVTQSGSTNHLYTNSSSSVAGAAAT SGNRISLNNVSPPNTAMRKERFLGSTGSGPQQHPPVQRGLHSYGQTKQQQQQHYSPLM PTSTSSSNDSVCDSLSSNNGQHLGARNSNDYAMLTSQNSSLSPHLGHGSACDEVVTAT TVSCGGSANESSEYPPSKMHRNRDINQIKRDLSTGTARVRTLYACMGESEGELSFEPN QIITNVRYSHEPGWLQGTLNGKTGLIPENYVEHLKPHH" misc_feature 524..1144 /gene="Graf" /note="The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins; Region: BAR_RhoGAP_OPHN1-like; cd07602" /db_xref="CDD:153286" misc_feature order(551..553,560..565,575..577,581..586,593..598, 602..607,614..619,623..628,635..640,644..649,656..658, 737..739,746..751,1025..1027,1034..1039,1043..1045, 1058..1060,1067..1072,1076..1081,1091..1096,1103..1108, 1112..1117,1121..1126,1130..1135) /gene="Graf" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:153286" misc_feature 1262..1588 /gene="Graf" /note="GTPase Regulator Associated with Focal adhesion and related proteins Pleckstrin homology (PH) domain; Region: BAR-PH_GRAF_family; cd01249" /db_xref="CDD:269953" misc_feature 1565..2170 /gene="Graf" /note="GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to...; Region: RhoGAP; cl02570" /db_xref="CDD:470621" misc_feature order(1709..1711,1841..1843,1853..1855,2060..2062, 2069..2074,2141..2143) /gene="Graf" /note="GTPase interaction site; other site" /db_xref="CDD:238090" misc_feature 1709..1711 /gene="Graf" /note="catalytic residue [active]" /db_xref="CDD:238090" misc_feature 3299..3460 /gene="Graf" /note="Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins; Region: SH3_GRAF-like; cd11882" /db_xref="CDD:212815" misc_feature order(3314..3316,3320..3322,3329..3331,3341..3343, 3398..3403,3440..3442,3446..3451) /gene="Graf" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212815" polyA_site 3969 /gene="Graf" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 attaattttt ttttttctaa tcgaagattt aacagccaaa gtaatatata tattgtggtg 61 catttagaat acaattgagt gaaatgtgca attgatattg atgctgaata atatccgctg 121 gaaatccgca aagcgcgacg cggtcgactg gcgttattcg agcagggcga cattagatat 181 tgggaaatta ctcatacact aatgtttact ctgaatattt caatatgcat cgtccaccta 241 ctgaaaaaca gtatttacat tgaaacgtaa atatttaaaa ggagccagag ccactcttcc 301 tgtaaatgtt tcaaacacca cagcttcaac gcctgaatac aaatatacac catacattag 361 ccaccgcgga agaacgcagc ctgaaataac ctaaagcagc tgggcccgaa aatcttcaat 421 atttttgaaa ccaaaagcaa acacaatggg cggcggcaaa aatatacgcc gcggcttgga 481 gccactggag ttcgaggaat gcatcgtcga cagtccggac tttcgcgaaa atctaaaccg 541 acatgaaaag gagctggacc acactagtca tcaaataaaa cgaataatca aagaggtcaa 601 ggatctaatg agtgcggcaa agatgctgtc cactagaatg aaacaattgg ccattttact 661 taccgacttt aactttgagt gcataggcac tgctcagacc gacgacgaga atgtcatttg 721 cgaaagccta aaacgctttg gtgctatcat tggcaatatc gaagatgagc gcgagaaaat 781 gctaacgctc gctgacaaac atattattga gtcgctggag gattttcgaa aaaagcaaat 841 tggcggcgtc aaagaaaaca aaaagaaatt cgataagaaa acggagaaat tctgtcagtc 901 gcaggagcgt tttctcaata tgtcaactaa aaagcccgag aacacaatac aggaggctga 961 tgctagcttg ggcatgcacg aacgcgagta tatccaggag tcgctgagct atgtcctgcg 1021 gatacaggaa gtgcaggaac gaatcaaatt cgagttcgtc gagatactgc tcgcatttat 1081 ttctggctgg ttggtgttct atcacacagc ccacgaacag gcggaagatc atcgcgacta 1141 cctgcaggat ttgaggcaca aggtgcagaa gactcgcgaa aatttcgaag aggctcgcga 1201 aaaggttact gagttgaaaa caaagtacat ggaaaaacgc acaaagcccg aggagatttt 1261 cacaaagcgg ggctacctat ttttaatgga aaaaaagcca ttcaaagcga cgtggacgaa 1321 atactattgt acattcaaga agcaaaagcg cgagttcacg atgctgcagt tcaatcaaat 1381 gaatcacaat ttcaccaggc cggaggcacg cgatgacgag aagctgacgc tcttctcgtg 1441 ccagcgaaga gcctcggagt tcgagaagcg cttctgcttc gatttgacct tcaaggagaa 1501 gccgggcgtc gtctatacct ttcaggcgct aagcgaaaag gatcatcgct actggattag 1561 cgctatggat ggcacggagc cgacttatct ggcgcctggt aaaatcaaag tcagcgaggc 1621 ataccatctg gatgaggccg gcttcatgtt catccgccgc tgcattcaag tattagagat 1681 ccgtggtctg gaggacgagg ggatttaccg gaagagcggt gtgggtacca aaatcagcaa 1741 gctgctctcg ctgggcctga atcaaaagga aaccgacgac gtcttcgtgg acgacaagta 1801 ccgggattta atggagagca acaccattgc cagtgccctg aaaatgtatc tgcgaaatct 1861 aaatgagccc ttgatgacct atcaatacca cagtgatttt attgaggcag ccaagcaaga 1921 aaccctgaat caacgcgtga acgaggtgca caagctggtc tacaaattgc cacagcctaa 1981 ttttcagatg ctggacatgg ttatttgcca tttgacagac gtttcacgaa agtacgagaa 2041 gaacaagatg tccgtattca atctgggcgt ggttttcgga cccactttgc tgcgacctcg 2101 cgaggaatcg gtggccgcca tactggatat taaattcaac aatatcgtca ttaacattct 2161 gattgataac tacgagcgga tcttcaagaa caagcccagc gccgatgtaa agctgcctgt 2221 ggaggccgcc aaggcgccga gcattatgta tcccgcacgc agcagtccac ccacgcgaat 2281 gccgcgtgcc tctcaaatag gaaaggccgc ttcgactggt gccatgggca gtacgagcag 2341 cactgcggcg gcggcggcag cggcggggaa tccgatgttc ctcaatcagc agaagatcta 2401 ccgcgtggtc agcaaatcca attgtacaga gcccaccatg tcgtccagcc tgcagaatat 2461 tccgaatggc gataactatg cttcgggcgg tgccggctgc atttccctgt cgccgcccat 2521 gcatatgctg aatggcatac tctcgccgac catcggcagc atcaacaatc tgcacacaat 2581 atcgaagaac gagacgacgg taggaacgac aacggcggcg ggcacacggc gatacgttcc 2641 caacgacacg gctgaggtcg cgaccgatta tggtattata ggtgccaaca atggcggcgt 2701 gacgctgcag tcgcatcatg ccatacccgt cagcagcacg accaatttcc ggcatcccga 2761 gtacctagtg acccagtcgg ggtcgactaa tcacctatat acgaacagta gctctagtgt 2821 cgctggtgcc gccgctacct caggcaatcg gattagtctg aacaacgttt ccccgccaaa 2881 tacagcgatg cgaaaggaga gatttctcgg tagcaccggc agcgggccgc agcagcatcc 2941 gcccgtccaa cggggcctcc actcgtacgg ccaaacgaag cagcagcagc agcagcacta 3001 ctcacccctg atgcccacgt caacgtcgag ctccaacgac agcgtatgtg attcactttc 3061 ttccaataac ggccagcatt tgggcgcacg caactctaat gattatgcca tgctaacgtc 3121 acagaactca tcgctgtcgc cgcatcttgg acacggatcc gcctgcgatg aggtcgtcac 3181 ggccaccacc gtcagctgcg gcggctccgc caacgagagt tccgagtatc cgcccagcaa 3241 aatgcatcgt aatcgtgaca ttaaccaaat aaaacgtgat ttgtcaacgg gcacagctcg 3301 agtgcgcaca ctctatgctt gcatgggcga gagcgagggg gagctttcgt ttgagcccaa 3361 tcaaataata accaatgttc ggtattccca cgagcccggc tggttgcagg gcacactaaa 3421 tggaaaaaca ggactcattc cggagaacta tgtggaacac ttgaagcccc accattagat 3481 tacgctttgg ttcggcttgg gagttcgaat gttccctcgt attttttgca ttcgtcgtta 3541 gataaaatta aaaaaaaaac aaaaacaaaa caaaaaaatg aaatattagg aaatcgaaaa 3601 atgatcgttg tgtaaaaaaa actaaaacta atttttgagt atgtgccctt ggggttgttt 3661 tacatgaaat gcattttatt ttatgctgga aaccaggaaa ccacaatctt accttataac 3721 tatgttaacc tttataatac catgaccata caatgtactt atttttaatt atttaataag 3781 gagtataaac tcagtgcaac tgcaaagatt tatttactaa ttgttacgct cttcatttgt 3841 tgcttattta tacataattc acgtaatttg tgcaaaaatg aattacatcg tatctaatat 3901 ctactacata tacaattgta taaaaataaa tagcagtgct tcgaacactt ttaaaatgta 3961 aactttaaa