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LOCUS XM_017140649 1947 bp mRNA linear INV 09-DEC-2024 (LOC108056719), transcript variant X3, mRNA. ACCESSION XM_017140649 VERSION XM_017140649.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140649.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1947 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1947 /gene="LOC108056719" /note="chromobox protein homolog 3; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108056719" CDS 204..1181 /gene="LOC108056719" /codon_start=1 /product="chromobox protein homolog 3 isoform X3" /protein_id="XP_016996138.2" /db_xref="GeneID:108056719" /translation="MVKLGKKKAVEELGRKKLRNGAAPDGEENDGDTGSSASRSTSVS SSKKPLNKRKARPIVRSESEDSDDLPLNNGNNNKVSTSSSGGGSSAPKKRKLGRPKSN AAAKNGKKALANEDSEEDAVLDEQEAEVEYEVEAIVGQKTVKGATYFQVRWKGYTKAE DTWMLEADLSCDYLLEQFRAKQEAKPKGKTAKGAKKAGGGGRGRPPGGGGGTKKSAAA PTDPEKEWVVERIVDFVDDAEGGLYRIRWKGFGAKDDTWEPESNLSCEGLIEKFKRDL VTQKNVETKELRESPKKTKRLVNEYYPRTNIHNRIERSSKRAAAKNRCV" misc_feature 612..743 /gene="LOC108056719" /note="CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains; Region: CD_CSD; cd00024" /db_xref="CDD:349274" misc_feature 879..1025 /gene="LOC108056719" /note="CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains; Region: CD_CSD; cd00024" /db_xref="CDD:349274" misc_feature order(879..893,936..938,942..953,963..965,969..980, 984..989,1005..1007,1014..1019) /gene="LOC108056719" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:349274" polyA_site 1947 /gene="LOC108056719" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cttccaattt taggaccatt tgcgctcgcg tcggggaaat tgggaaagtc agaactttct 61 aacatcgtgt acagtccgca gtcgtcgaaa aagaaaaaac tcggtatatt gttttcccag 121 atacgcggca aacggaaaaa gggagcgtaa acaattggca catcccggcc agaatccacc 181 aaccaaccgg atacgatagc aacatggtga agctgggcaa gaaaaaggcg gtcgaggagc 241 tgggccgcaa gaagctgagg aacggtgccg ccccagatgg cgaggagaac gatggggaca 301 ccggctcctc ggcctcccgc tccacatcgg tctcgtcgtc taagaagccg ctgaacaagc 361 gcaaggcccg cccgatagtg cgctccgaat cggaggacag cgacgacctg ccgctcaaca 421 atggcaacaa caacaaggtg tccaccagct cctccggcgg tggttcatcg gcccccaaga 481 agcgcaagct gggcaggccc aagtcgaatg cagccgccaa aaatggcaag aaggctctgg 541 ctaacgagga ttccgaggag gatgccgtcc tggacgagca ggaagccgag gtggaatacg 601 aggtggaggc cattgtgggc cagaagacgg tgaagggagc cacctacttc caggtgcgct 661 ggaagggata caccaaggcg gaggacacat ggatgctgga ggcggatctc agctgcgatt 721 acttgctgga acagtttcgg gccaagcagg aggccaaacc caaaggcaag accgccaagg 781 gcgccaagaa ggcgggaggc ggcggtcgtg gtcgtccgcc cggcggcggc ggcggcacaa 841 agaagagcgc cgctgctcca actgatcccg aaaaggagtg ggttgtcgag cgcatcgtgg 901 actttgtcga cgacgccgag ggcggcctgt accgcattcg gtggaaggga ttcggcgcca 961 aggacgacac ctgggagccc gagtcgaacc tctcatgcga gggcctcatc gagaagttca 1021 agcgcgacct ggtcacgcag aagaacgtgg agaccaagga gctgcgcgaa tcgcccaaaa 1081 agaccaaacg actcgtcaac gaatattacc cgaggacaaa tattcacaat cgcatcgagc 1141 gctcctccaa acgggctgcc gccaagaacc ggtgcgttta aaatctctat atacagcata 1201 agcgtcttct acggcgagga ctgaggaaag gcagcggccc cgccccctcg aagtggtcgt 1261 cggcggaggc ggcactaaaa aataggattt tagtacactt tttacttttt ttttcgacat 1321 tggtttaagg cagggatggc aaagaagagt tgatctctcg ccaaataact cttgctgtca 1381 atttttcgtt tgatgaaatt gcagaactaa gagttttctg gcaaactcaa ctcttatttg 1441 caattcctgg ttacgaggaa acacacgcgg gcggtgtacg tggagtgttg tggagctgga 1501 gaggtcagga gtcgagatgg agcacgatat gacccccgaa aaaatgcaga caagcaacac 1561 attacaaaat actgaaatac agatttatct agcacttaag tgagaggtcg ggcgcttgaa 1621 tgcagcacag tatgcatata tgtagtatta tatctggttg tgctgcactc aaccagcgta 1681 gaatttaagc aaccataaaa gtagacctaa aaaatacaca cacacatctt ttagccctaa 1741 gccgaaagcc caagttttgt cttcgcaagt aattgccaca gctgcaaata gcctcttaac 1801 taacttcttc ccaagcgtct ccattcataa ttgtgtacgc catagtgtac gcaaagtaat 1861 tacataataa ttagcaaggg gccaaaaaag cctccagtaa tatgaagtat aattaataaa 1921 tgtaaacgat gtcaaaaatg cacacaa