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LOCUS XM_017140288 3425 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017140288 VERSION XM_017140288.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140288.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3425 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3425 /gene="Raf" /note="Raf oncogene; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056478" CDS 637..2871 /gene="Raf" /codon_start=1 /product="raf homolog serine/threonine-protein kinase Raf" /protein_id="XP_016995777.2" /db_xref="GeneID:108056478" /translation="MSSESSTEGDSDLYDPLAEELHNVQLVKHVTRENIDALNAKFAN LQEPPAMYLMEYQELTSKLHELEAKEQELIERLNAQDQRQEQQQQQQQQEQEQPHYQN QTQILQQQRQLARVHVHGSDLTDSLVSSQPGSQCGTLTRQPKILLRAHLPNQQRTSVE VISGVRLCDALMKALKLRQLTPDMCEVSTTHAGRHIIPWHTDIGTLHVEEIFVRLLDK FPIRTHIKHQIIRKTFFSLVFCEGCRRLLFTGFYCSQCNFRFHQRCANRVPMLCQPFP MDSYYQLLLAENPETGVGFPGTRGTAVRFNMSSRSRSRRCSSSGSSSSSKPPSASSGN HRQGRPPRISQDDRSNSAPNVCINNIRSVTSEVQRSLIMQARPPLPYPCTDHSNSTQA SPTSTLKHNRPRARSADESNKNLLSRDAKSSEENWNILAEEILIGPRIGSGSFGTVYR AHWHGPVAVKTLNVKTPSPAQLQAFKNEVAMLKKTRHCNILLFMGCVSKPSLAIVTQW CEGSSLYKHVHVSETKFKLNTLIDIGRQVAQGMDYLHAKNIIHRDLKSNNIFLHEDLS VKIGDFGLATAKTRWSGEKQANQPTGSILWMAPEVIRMQELNPYSFQSDVYAFGIVMY ELLAECLPYGHISNKDQILFMVGRGLLRPDMSQVRSDAPQALKRLAEDCIKYTPKDRP LFRPLLNMLENMLRTLPKIHRSASEPNLTQSQLQNDEFLYLPSPKTPVNFNNFQFFGS AGNI" misc_feature 1072..1284 /gene="Raf" /note="Ras-binding domain (RBD) found in RAF family serine/threonine kinases; Region: RBD_RAF; cd01816" /db_xref="CDD:340514" misc_feature order(1072..1074,1078..1080,1093..1110,1114..1116, 1153..1155,1165..1173) /gene="Raf" /note="RBD_Raf-Ras interaction site [polypeptide binding]; other site" /db_xref="CDD:340514" misc_feature order(1072..1074,1093..1095,1099..1110,1153..1155, 1162..1173) /gene="Raf" /note="RBD_Raf-KRas interaction site [polypeptide binding]; other site" /db_xref="CDD:340514" misc_feature 1264..1266 /gene="Raf" /note="Ca binding site [ion binding]; other site" /db_xref="CDD:340514" misc_feature 1309..1455 /gene="Raf" /note="protein kinase C conserved region 1 (C1 domain) found in the Raf (Rapidly Accelerated Fibrosarcoma) kinase family; Region: C1_Raf; cd20811" /db_xref="CDD:410361" misc_feature 1954..2712 /gene="Raf" /note="Catalytic domain of the Serine/Threonine Kinases, Raf (Rapidly Accelerated Fibrosarcoma) kinases; Region: STKc_Raf; cd14062" /db_xref="CDD:270964" misc_feature order(1954..1968,1978..1980,2008..2010,2014..2016, 2107..2109,2152..2163,2173..2175,2179..2181,2293..2295, 2299..2301,2305..2310,2314..2316,2347..2349,2356..2358, 2410..2421) /gene="Raf" /note="active site" /db_xref="CDD:270964" misc_feature order(1954..1968,1978..1980,2008..2010,2014..2016, 2107..2109,2152..2163,2173..2175,2293..2295,2299..2301, 2305..2310,2314..2316,2347..2349) /gene="Raf" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270964" misc_feature order(1966..1968,2173..2175,2179..2181,2293..2295, 2299..2301,2305..2307,2356..2358,2410..2421) /gene="Raf" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270964" misc_feature order(1990..1992,1996..2001,2080..2100,2110..2118, 2251..2253,2260..2265,2272..2277,2323..2325,2329..2331, 2710..2712) /gene="Raf" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:270964" misc_feature order(2344..2385,2401..2421) /gene="Raf" /note="activation loop (A-loop); other site" /db_xref="CDD:270964" ORIGIN 1 ctagtgatgg tctgttggca ctcggagtca tcgatgtttt tgcttgaact tcactaagta 61 aaaaaaaaag gggaaaagag tcgaaaatgt agtaaaactt accgcaagga ggtaaataaa 121 ttgtagcaag tgaagtgaaa caaaaggaca gtgggccagt tgccagtgcg ccaccattgg 181 gcagccctcg gaggagccgg ctggagtgga taattgacgg ctatcggtta attcaaggcc 241 ccgaatccga atcctttgga agccccaagt tcagctgctt ttgcttttgc ttttgccttt 301 gcctttgcac acactgacct tcattataca tacatacccg tacatatatg caaggtggtt 361 gtgcaggtgt gtgagtgagt gtgtgggtgc actggaaaaa agctgggatt ttcctagcca 421 acaaaaaaac gctatttaaa gccggaaaag tggtaaaaac aaagcgtaag aaaaagtcaa 481 ggacaacatg ctgccccccg cccacaaaag tttgggttgt gggtgggcca cccattagaa 541 ctctactgaa acgcaagcgc aggagttttt tttcctccgt tttcggggtc atggtcacgg 601 gatatagcaa aatacccata taaagcataa aaaatcatgt ccagcgaatc ctccaccgaa 661 ggcgacagcg atctgtacga tcctttggcc gaggagctcc acaatgtcca gttggtgaag 721 catgtgaccc gggagaacat cgatgcgctg aatgccaagt tcgccaatct gcaggagcca 781 ccggccatgt acttaatgga ataccaggag ctgacctcga agctgcacga actggaggcc 841 aaggagcagg agctgataga gcgcctgaat gcccaggatc agaggcagga gcagcagcag 901 cagcagcagc agcaggagca ggagcagccg cactaccaga atcaaaccca gattctccag 961 cagcagcgcc agctggcccg cgtccatgtc catggcagcg atcttacgga tagcctagtt 1021 agctcccagc cgggcagcca gtgtggaact ctcacccgcc agcccaagat cctgctgcgc 1081 gcccatttgc ccaaccagca gcgcacctcc gtggaggtca tctccggcgt ccgcctctgc 1141 gatgccctaa tgaaggcgct gaagttgcgc caactaacac ccgatatgtg cgaggtgagc 1201 accacgcatg cgggcagaca tatcataccg tggcacacgg acatcggcac cctgcacgtg 1261 gaggagatct ttgtgcggct gctggacaag tttcccatac ggacgcacat caagcatcag 1321 atcattagga agaccttctt ctcgctggtc ttttgcgagg gctgtcggcg gctgctgttc 1381 accgggttct attgcagcca gtgcaacttc aggttccatc agaggtgcgc caatcgggtg 1441 cccatgctgt gccagccctt tcccatggac agctactacc agctgctgct ggccgagaat 1501 ccggagacgg gcgtcggttt tccgggcacc cgcggcactg ccgtgcgctt caacatgagc 1561 agccgcagtc gcagtcggcg gtgcagcagc agcggcagca gcagcagctc caagccgccc 1621 tccgcctcct cgggcaacca tcggcagggt cgtccgccgc gaatcagcca ggacgatcgc 1681 tccaattcgg caccgaatgt gtgcatcaac aacattcgct cggtgaccag cgaggtgcag 1741 cgcagcctga tcatgcaggc caggccgccg ttgccgtatc cctgcacgga tcactcgaac 1801 tccacgcaag cctcgcccac cagcacgctg aagcacaatc gacccagggc ccgatcggcg 1861 gacgagagca acaagaatct gctctccagg gacgccaaga gctccgagga gaactggaac 1921 atcctggcgg aggagatttt gattgggccg cgcatcggtt cgggctcctt tggcaccgtt 1981 taccgcgccc actggcacgg acccgtggcc gtgaagacgc tcaacgtaaa gacgcccagt 2041 cccgcccagc tgcaggcgtt caagaacgag gtggccatgc tgaagaagac gcgccactgc 2101 aacattctgc tcttcatggg ctgcgtctcc aagccctcgt tggccattgt aactcagtgg 2161 tgcgagggca gcagcctcta caagcatgtc catgtcagcg agaccaagtt caagctgaac 2221 acgctgatcg atattggtcg ccaggtggcc cagggcatgg attacctgca tgccaagaat 2281 attatacaca gagacctcaa gtcgaacaat atattcttgc acgaggactt gtccgtgaaa 2341 attggcgatt tcggccttgc cacggcgaag acgcgttggt ctggcgaaaa gcaggccaat 2401 cagcccactg gcagtatttt gtggatggct ccggaggtga ttcgcatgca ggagctgaat 2461 ccctactcct tccagtcgga cgtttatgcc tttggcatcg tgatgtacga actgctggcc 2521 gagtgcctgc cgtatggcca tattagcaac aaggatcaga tcctgtttat ggtgggacgt 2581 ggattgctgc gccccgatat gagtcaagtg cgctcggatg cgccgcaggc tttgaagcgc 2641 ctcgccgagg actgcatcaa gtatacgccc aaggaccggc cgctcttcag gccgctgcta 2701 aatatgctgg agaacatgct gcgcactttg cccaagatcc atcgcagtgc cagcgaaccg 2761 aacctcacgc agtcgcagct gcagaacgac gagtttctgt acctgcccag cccaaagacg 2821 ccggtgaact tcaacaactt tcagttcttc ggcagtgctg ggaatatcta aacggcgacc 2881 tgtacctgta cttatatcct gtttctatat tatatatatt ttttgtccct ctgtacataa 2941 gcgattcgca aaggggaaag cccgccaaag tgaaagagat ggacgactca cgagcgaatt 3001 tagctgcttt ccttggaact gactaagtgc atttctgtta ccacaaaacg actaaagaaa 3061 ctgtaaacta aactgcaacg cccatgtgta cataactgca tcataactta tatacgttag 3121 gcaagactac tgaaactaaa aaactaaaaa ctaaactaaa ctaaactagc tgatcgcaat 3181 tacattatac acattatact tatactacaa aaagaacgaa ggtgttttgt gtctggagtt 3241 ggaagagaag aagaaaagga ggagaaagtt aaggagatga agaaaagaag attttattca 3301 tttagcaaca gtaaggaagg cgaaggatca cacagactta aacatatcta ctggcgatgg 3361 ccaggacctt ggtgtagtcg gctcccttgg ccagcgtctt ctccttgagg atggtgcgca 3421 gaatg