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LOCUS XM_017140264 2285 bp mRNA linear INV 09-DEC-2024 (crn), mRNA. ACCESSION XM_017140264 VERSION XM_017140264.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140264.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2285 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2285 /gene="crn" /note="pre-mRNA splicing factor crn; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108056463" CDS 112..2202 /gene="crn" /codon_start=1 /product="protein crooked neck" /protein_id="XP_016995753.2" /db_xref="GeneID:108056463" /translation="MERPQKMPKVAKVKNKAPAEVQITAEQLLREAKERDLEILPPPP KQKISDPAELADYQQRKRKTFEDNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWERA LDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMPRVNQFWYKYTYMEEMLENV AGARQVFERWMEWQPEEQAWQTYVNFELRYKEIDRAREVYERFVYVHPDVKNWIKFAR FEESHGFIHGSRRVFERAVEFFGDEYIEERLFIAFARFEEGQKEHDRARIIYKYALDH LAKERTQELFKAYTIHEKKYGDRAGIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRL IEAEGERDQIRETYERAISNVPPANEKNFWRRYIYLWINYALYEELEAEDAERTRQIY KTCLELIPHKQFTFSKLWLLYAQFEIRCKELQRARKALGLAIGMCPRDKLFRGYIDLE IQLREFERCRLLYEKFLEFGPENCVTWMKFAELENLLGDTERARAIFELAVQQSRLDM PELLWKAYIDFEVALGETELARQLYERLLERTQHVKVWMSFAKFEMGLSHGDSGQDAE LNVRLARRIYERANEMLRQLGDKESRVLLLEAWRDFERDAADAVALQRVMDKMPRRIK KRQKIVSDEGVEEGWEEVFDYIFPEDEMARPNLKLLAAAKMWKKQKDVTEEEEPVPVP AADPGQSETTAGGD" misc_feature <391..717 /gene="crn" /note="Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis]; Region: LapB; COG2956" /db_xref="CDD:442196" misc_feature 436..528 /gene="crn" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 541..627 /gene="crn" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature <649..1728 /gene="crn" /note="Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]; Region: RNA14; COG5107" /db_xref="CDD:227438" misc_feature 682..777 /gene="crn" /note="HAT (Half-A-TPR) repeat; Region: HAT; pfam02184" /db_xref="CDD:111114" misc_feature 1528..1620 /gene="crn" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 1633..1725 /gene="crn" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" polyA_site 2285 /gene="crn" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acgccaatcg ttatcgcaac acattattgg tggcattatt tatttttgcg atctaagtta 61 atttagtgat ttactagtta gttcgaggag caagcacaac agacttcagc catggagcgg 121 ccccagaaga tgcccaaggt ggccaaggtg aagaacaagg cgccggcgga ggtgcagatc 181 acggcggagc agctgctccg ggaggccaag gagcgcgacc tggagatcct gccgccgccg 241 ccgaagcaga agatctccga tcccgccgag ctggccgact accagcagcg caagcgcaag 301 accttcgagg acaatctgcg caagaaccgc atggtggtca gccactggat caagtacgcc 361 cagtgggagg agcagcagca ggagatccag cgggcgcgct ccatctggga gcgggcgctg 421 gacaacgagc accgcaacgt cacgctctgg ctgaagtacg ccgaaatgga gatgaagaac 481 aagcaggtca accatgcgcg caatctgtgg gatcgggcgg tgaccattat gccgcgcgtc 541 aaccagttct ggtacaagta cacctacatg gaggagatgc tggagaacgt ggccggggcg 601 cgccaggtgt tcgaacgctg gatggagtgg cagccggaag agcaggcgtg gcaaacctat 661 gttaactttg agctgcgcta caaggagatc gaccgggcgc gcgaggtcta cgagcggttc 721 gtctacgtgc atccggacgt caagaactgg atcaagttcg cccgcttcga ggagtcgcat 781 gggtttatcc atggctcgcg gcgagtgttt gaacgggcgg tggagttctt cggcgacgag 841 tacatcgagg agcggctgtt catcgccttt gcccgcttcg aggagggcca gaaggagcac 901 gaccgggcgc gcatcatcta caagtacgcg ctggaccacc tggccaagga gcgcacccag 961 gagctgttca aggcctacac gatacacgag aagaagtacg gcgaccgggc gggcatcgag 1021 gatgtgatcg tgtccaagcg caagtaccag tacgagcagg aggtggccgc caatccgacg 1081 aactacgacg cctggttcga ctatctgcgc ctgatcgagg cggagggcga gcgcgatcag 1141 atccgcgaga cctacgaacg ggccatctcg aatgtgccgc cggcaaatga gaagaacttt 1201 tggcgtcgct acatctatct gtggatcaac tacgctttgt atgaggaact ggaggccgag 1261 gatgccgagc gcacgcgaca gatatacaag acctgcctgg agctgatacc gcacaagcag 1321 ttcaccttca gcaagctgtg gctgctctac gctcagttcg agatccgctg caaggagctg 1381 cagcgggcac gcaaggccct cggtttggcc atcggcatgt gtccgcggga caagctcttc 1441 cggggctaca tcgatctgga gatccagctg cgcgagttcg agcgctgccg cctgctgtac 1501 gagaagttcc tggagtttgg gcccgagaac tgcgtcacct ggatgaagtt cgccgagctg 1561 gagaacctcc tcggcgacac ggagcgtgcc agggccattt tcgagctggc cgtgcagcag 1621 tcgcgtctgg atatgcccga gctgctgtgg aaggcgtaca ttgacttcga ggtggccctg 1681 ggcgaaacgg agctggcccg gcagctgtac gagcgcctgc tggagcgcac gcagcacgtg 1741 aaggtctgga tgtcgttcgc caagttcgag atgggcctga gccacggcga cagcgggcag 1801 gatgccgagc tgaacgtgcg actggcgagg cggatttacg agcgggccaa cgagatgctg 1861 cgccagctgg gcgacaagga gtcgcgggtg ctgctgctcg aggcttggcg cgacttcgag 1921 cgcgacgccg ccgatgcggt ggccctgcag cgggtgatgg acaagatgcc gcggcgcatc 1981 aagaaacggc agaagatcgt ctccgacgag ggcgtcgagg agggctggga ggaggtcttc 2041 gactacatct tccccgagga cgagatggcg cggcccaatc tcaagctgct ggccgccgcc 2101 aagatgtgga agaagcagaa ggacgtcacg gaggaggaag aacctgttcc agtacctgcc 2161 gctgatcctg gccagtccga gacgacggct ggcggggatt gacccgaaag tagctattcc 2221 atttcgcatt gaagtctttt cgcgaaggcc accccaaaat cacaaggaat aaaccaatta 2281 aataa