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LOCUS XM_017139958 1972 bp mRNA linear INV 09-DEC-2024 methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial (LOC108056242), mRNA. ACCESSION XM_017139958 VERSION XM_017139958.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139958.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1972 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1972 /gene="LOC108056242" /note="probable methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins" /db_xref="GeneID:108056242" CDS 177..1739 /gene="LOC108056242" /codon_start=1 /product="probable methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial" /protein_id="XP_016995447.2" /db_xref="GeneID:108056242" /translation="MSLVRLIGAEARLLAKRSYSSAAPTTKLFIDGKFVESKTSEWID VHDPATNQVVTRVPKATQAEMQAALESNKKAFRSWSNQSILTRQQVMFKLQALIKENM GELAKNITKEQGKTLADAEGDVLRGLQVVEHCCSIPSLQMGETVANVARDMDTYSLVL PLGVTAGVAPFNFPAMIPLWMFPVAITTGNTMLLKPSERVPGATMLLMELLNEAGCPP GVVNVIHGQHDAVNFICDAPEIKAVSFVGSDQAGKYIYERAGKNGKRVQSNMGAKNHG IILADANKENTLNQLAGAAFGAAGQRCMALSTAVFVGDAQSWIPDLVERAQKLKVNAG HVPGTDVGPVISAASRQRINDLIESGVKEGAKLVLDGRKISVPGYEDGYFVGPTILSD VTPSMKCYTEEIFGPVLVILNAETLDDAIGIVNANPYGNGTAVFTTNGAAARKFVNEI DAGQVGVNVPIPVPLPMFSFTGTRGSFRGDHHFYGKQGIKFYTQTKTVTQLWRETDVT HTQAAVAMPTMK" misc_feature 252..1682 /gene="LOC108056242" /note="Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2; Region: ALDH_F6_MMSDH; cd07085" /db_xref="CDD:143404" misc_feature order(423..425,429..431,441..443,450..452,462..464, 561..563,570..575,600..623,636..638,645..647,654..656, 933..935,945..947,954..956,963..965,969..971,1488..1490, 1494..1499,1503..1508,1515..1517,1524..1529,1533..1535, 1539..1550,1575..1577,1587..1589,1593..1595,1635..1637, 1656..1673,1677..1682) /gene="LOC108056242" /note="tetrameric interface [polypeptide binding]; other site" /db_xref="CDD:143404" misc_feature order(681..692,714..716,759..761,768..770,858..860, 909..920,927..929,981..989,1083..1085,1383..1385, 1389..1391,1467..1469) /gene="LOC108056242" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:143404" misc_feature order(690..692,981..983,1074..1076,1083..1085) /gene="LOC108056242" /note="catalytic residues [active]" /db_xref="CDD:143404" polyA_site 1972 /gene="LOC108056242" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcacaccgcc acacaccatc gcacacacta tataatatag tggggatata ggaataatac 61 acaggccccc acatcggcag cgaaagtcgg cggctgcgtt cagttctagt ggaaccaccg 121 tttggagagc acgcgatccc cgatccccag ttctcaacta cacaaatatc cccaagatgt 181 ccctagtgcg tttgatcggt gctgaggccc gccttttggc aaagaggtcc tactcctcgg 241 ccgctcccac caccaagctc ttcatcgacg gcaagttcgt ggagtcgaag acgtcggaat 301 ggatcgacgt gcacgatccg gccaccaacc aggtggtgac ccgtgtgccc aaggccaccc 361 aggcggagat gcaggcggct ctggagtcga acaagaaggc cttccgctcg tggagtaacc 421 aatcgatcct cacccgtcag caggtgatgt tcaagctgca ggctttgatc aaggagaaca 481 tgggtgagct ggccaagaat atcaccaagg agcagggcaa aactttggcc gatgccgaag 541 gtgatgtcct ccgtggcctc caggtggtcg agcactgctg cagcattccc tccctccaaa 601 tgggtgaaac ggtggccaat gtggcccgcg atatggatac ctattccctg gtcctgccac 661 tcggtgtgac cgccggcgtg gctccgttca actttcccgc catgattccg ctctggatgt 721 tcccggtggc cattaccacc ggtaatacga tgctgctgaa gccctcggag cgtgtgcccg 781 gtgccaccat gctgctgatg gagctgctca acgaggccgg ctgtccgccg ggtgtggtca 841 acgtgatcca tggccagcac gatgcggtga acttcatctg cgatgcgccc gagatcaagg 901 ccgtctcctt tgtgggttcc gatcaagcgg gcaagtatat ttacgagcga gcgggcaaaa 961 atggcaagcg ggtgcagtcg aatatgggcg ctaagaatca tggcatcatc ctggcggatg 1021 ccaacaagga gaataccctg aatcagttgg caggagccgc cttcggagct gccggccagc 1081 gttgcatggc cctgtcgacg gcggtctttg tgggcgatgc ccagtcctgg atccccgatc 1141 tcgtcgagcg tgcccagaag ctgaaggtga atgccggtca tgtgcccgga acggatgtgg 1201 gtcccgtgat cagtgccgcc tccaggcagc gcatcaatga cttgatcgag tcgggtgtga 1261 aggagggagc taagctggtc ctggatggca ggaagatcag tgtgcccggt tatgaggatg 1321 gctactttgt gggcccgacc atcctgagcg atgtgacgcc cagcatgaag tgctacaccg 1381 aggagatctt tggccccgtg ctggtcatcc tgaatgccga gactctggac gatgccattg 1441 gcattgtgaa tgcgaatccg tatggtaatg gaaccgctgt cttcaccacc aatggtgcag 1501 ctgccaggaa gtttgtgaac gaaatcgatg ccgggcaggt gggcgtgaat gtgcccattc 1561 cggtgccact gcccatgttc tcgttcaccg gaacgagggg ctccttccgc ggcgatcatc 1621 acttctatgg caagcagggc atcaagttct acacgcagac caagacggtc acccagttgt 1681 ggcgggagac ggatgtcacc cacacccagg cggccgtggc catgcccacc atgaagtagg 1741 aggaggatct ggatagaaga ttcccgattc ccggttgaga tgttccacgt attgaacttc 1801 tggatgctgg cacacaggac gtagttagaa gctagataca gaagaaatta ttgcatttat 1861 ttttgtgcct gtttattaga tttaagaaga tgtgtagcga aaaaacaaga gaagcttgaa 1921 aaaactgaaa tgtaaacgat aacaataaaa tgttggaaaa tgtaaaaaat aa