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LOCUS XM_017139802 2892 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017139802 VERSION XM_017139802.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139802.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2892 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2892 /gene="exd" /note="PBX homeobox extradenticle; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:108056118" CDS 174..1304 /gene="exd" /codon_start=1 /product="homeobox protein extradenticle" /protein_id="XP_016995291.1" /db_xref="GeneID:108056118" /translation="MEDPNRMLAHTGGMMAPQGYGLSGQDDGQNTGSENEVRKQKDIG EILQQIMSISEQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSIRNTQEEEPPD PQLMRLDNMLIAEGVAGPEKGGGGAAAASAAAASQGGSLSIDGADNAIEHSDYRAKLA QIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMVQIIHKKFSSIQM QLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELAR KCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAGASPYSMAGPPSGTTTPM MSPAPPQDSMGYPMGSGGYDQQQPYDNSMGGYDPNLHQDLSP" misc_feature 297..884 /gene="exd" /note="PBC domain; Region: PBC; pfam03792" /db_xref="CDD:461052" misc_feature 888..1070 /gene="exd" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:238039" misc_feature order(888..902,906..908,966..968,984..986,1023..1025, 1029..1034,1041..1046,1050..1058,1062..1067) /gene="exd" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(894..896,903..905,1032..1034,1041..1046,1053..1055) /gene="exd" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" polyA_site 2892 /gene="exd" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acatacatct tgttataaac agtttagaat attttctgac gtaataaaat cacaaaaatt 61 agagccaaag gcctttttta acttgtgaaa acattattcg gctgtatctt gaacaaaaga 121 cttgtatgca taaataagta tttctatctc gggttgatat tgttcggcga gtcatggagg 181 atccaaatcg catgttggct cacaccggtg gcatgatggc tccccaggga tacggattgt 241 ctggccagga cgatggccag aacactggca gcgagaacga ggtgcgcaag cagaaggaca 301 tcggcgagat attgcaacag ataatgagca tttcggaaca atcactggac gaggcgcagg 361 ccagaaaaca taccctcaac tgtcaccgga tgaagccggc ccttttctct gttctatgcg 421 aaattaagga gaagaccgtc ctgtcgattc gcaacactca ggaggaggag cccccagatc 481 cgcaactgat gagattagac aacatgctga ttgccgaggg cgtggccggg cccgaaaagg 541 gcggtggcgg agcggcggcc gcctcggcag ctgcggccag ccagggcggc tcgctgtcca 601 tcgatggtgc cgacaatgcc atcgagcatt ccgactaccg tgccaagctg gcgcagattc 661 gtcagatcta ccaccaggag ctggagaagt acgagcaggc atgcaacgag tttaccacgc 721 atgtcatgaa tcttctacgc gaacagagtc gcacgagacc cattacacca aaggagatcg 781 agcgaatggt ccagattata cacaaaaagt ttagttccat acaaatgcag ctgaagcagt 841 cgacctgcga ggccgtgatg attctccgtt cgcgtttcct cgacgctcgc cgcaagcgcc 901 gcaatttcag caagcaggca tccgagatcc tcaacgagta cttctacagc catttgagca 961 acccatatcc atccgaggag gccaaagagg agttggcacg caagtgcggc atcacggtct 1021 cccaagtgtc caattggttt ggcaacaagc gcattcgcta caagaagaac atcggcaagg 1081 cacaggagga ggccaatttg tatgcggcca agaaggctgc cggcgcttca ccgtattcca 1141 tggctggtcc tccgagtggg acaaccacac ccatgatgtc acccgctccg ccgcaggatt 1201 cgatgggcta tccgatgggc tcgggtggct atgaccagca gcaaccgtac gacaacagca 1261 tgggcggtta cgatccaaat ctccatcagg atctaagccc ctgaggatca gggctgtaag 1321 tgagaacctg ctcccagttg gagaatccct cgtactacag ttgcggtcaa aataactgca 1381 ttgaaaaaat caatcaatcg atcatgcagt ttcttctttc taattatgta agttctcttt 1441 ttcgtaacga ggcgcgcggt tttttcgttt ttgctgtatt aattctgctg tcacacagat 1501 aagtttaaaa aaaattccca taaatttaga tatagtgaat agaataacaa tacgtaatag 1561 ctagtttgtg cttgctagat tttggttcgt ggaaaacagg agctcatata aaagaaaaca 1621 atattataat cagttgcgag aggtagacag aaatctcttt aggcaaaatt cagttgaaat 1681 tctgtggcaa gagatttctg ttttcctctc gctcctgata attgtatatt gttttctata 1741 aatgaaagaa ttttagcagg ataatcctgt agtaaaatat caagaaagct taaaaaatca 1801 aatcatacat atatgcttcc tttcatattt gattcaaatg caaatgcaaa tgcatgtttg 1861 taaagtaaat acgtaataat tggtttaagc aattatattt tataacataa caattcgtaa 1921 agggaaaata atcaatgcag agactttagc ttatatccat taaccattga gaagaacgta 1981 ttcaaggaaa ctcaattaaa aactcgtggt atacgaatag tttcactagg aacggggagg 2041 cacaacattt cagggctctt attttgaccg cagctgtgta taaatatatt ttaatactaa 2101 ttaatttacc tacatttgcg ggtatataca aaaatattgc atgtgtaaat catactatga 2161 cggttctttt tggctacagt acgtatacga cgacagcaaa atagtgttta ctaaatttaa 2221 atctgtacga aatacgaaat ttttaactac gaacaatacg aaaatacgaa actaaaccat 2281 gtatacgatg tatatcaaat aaataaataa tacatgttgt tgttatccgc acacgtcaaa 2341 actaaataca aaaaatattt caaatgtaaa aacggtgaag attttgaaaa aatttaatgt 2401 ctcatttcca tcgaaagacg aattgtttct gcattactaa ggttttgaaa ttaaattaaa 2461 ggaaaacaca tgattatgta tgtgtttttt tttttgcaat aaataaagta ttatatatta 2521 actattgctt ttaaaacaac tttttaattt taattgcatt ggctaaaaat aattgtatta 2581 tttttgataa ttttattttc gaagaaaaac tcgtctttcg ctttgaatga aatatgctga 2641 attcttttgc ctcaattaaa acggatatta aaacagatta tttaaatgaa tacaaaaacg 2701 attattattt ttactgataa ataatatatg tcttcttcgc ccgtctttcg ctcacataaa 2761 acggtcaaat gaaaccattc aatgtatttc agtatgataa ggtattgcat taaaaatttt 2821 ggataacaat agaaaaatat ataaatacac aactttacac gaataacata ataaatataa 2881 aaaccaagta ta