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LOCUS XM_017139785 3144 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_017139785 VERSION XM_017139785.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139785.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3144 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3144 /gene="NetA" /note="Netrin-A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:108056109" CDS 431..2662 /gene="NetA" /codon_start=1 /product="netrin-A isoform X1" /protein_id="XP_016995274.2" /db_xref="GeneID:108056109" /translation="MPPLAAIRGLWLLAVLGILKGIPGTAGIPNDQYLKMFPQQAPPQ DDLCYDRAREPKVCVPEFVNAALDAPVVASSTCGSMGSSANPQRYCEFQEHERSCHTC DANDPLRSFPARYLTDNNNSNNVTCWRSEPVLGSGDNVTLTLSLGKKFELVYVVLQLC PHAPRPDSMAIYKSTDHGLTWQPFQFYSSQCRRLFGRPARQATGRHNEHEARCSDLTR PMGGSRIAFRTLEGRPSGKDLDSSPVMQDWVTATDIRVVFHRLQRVGDPQAVLSLDAG HGGASVDLAGGKYSVPLANGGSGPTGNNIELSHEGAGGSSGSGSGLHYAISDFAVGGR CKCNGHASKCSTDASGQLNCECSHNTAGRDCERCKPFHFDRPWARATAKETNECKECI CNKHARQCRFNMEIFRLSQGVSGGVCQNCRHSTTGRNCHQCKEGFYRDTTKPLTHRKV CKACECHPIGSSGKICNSTSGQCPCKDGVTGLTCNRCARGYQQSRSHIAPCIKQPPRM INMLDTQNTAPEPDEPQSSPAVGGDRSGATGTAAQSQYYRTEGGRECGKCRVSTKRLN LNKFCKRDYAIMAKVIGRDTSSEAAASREAPRRAMDPDGEDYEMDQDQPGSITPADYH YPNPNSSPSDSSSEVERYDLQIQAVFKRSRPGESSGAGNVYGMPSTILKRGPMTWIIP TKHLECRCPKIRVNRSYLILGRDSEAPPGYLGIGPHSIVIEWKEDWYRRMKRFQRRAR TCA" misc_feature 584..1231 /gene="NetA" /note="Laminin N-terminal domain (domain VI); Region: LamNT; smart00136" /db_xref="CDD:214532" misc_feature 1430..1567 /gene="NetA" /note="Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in...; Region: EGF_Lam; cd00055" /db_xref="CDD:238012" misc_feature order(1433..1435,1439..1441,1469..1471,1490..1492, 1496..1498,1523..1525) /gene="NetA" /note="EGF-like motif [active]" /db_xref="CDD:238012" misc_feature 1601..1774 /gene="NetA" /note="Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in...; Region: EGF_Lam; cd00055" /db_xref="CDD:238012" misc_feature order(1601..1603,1607..1609,1628..1630,1682..1684, 1691..1693,1718..1720) /gene="NetA" /note="EGF-like motif [active]" /db_xref="CDD:238012" misc_feature 1787..1933 /gene="NetA" /note="Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in...; Region: EGF_Lam; cd00055" /db_xref="CDD:238012" misc_feature order(1790..1792,1796..1798,1826..1828,1847..1849, 1853..1855,1880..1882) /gene="NetA" /note="EGF-like motif [active]" /db_xref="CDD:238012" misc_feature 2129..2650 /gene="NetA" /note="NTR domain, Netrin-1-like subfamily; The C-terminal NTR domain of netrins is also called domain C in the context of C. elegans netrin UNC-6. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration...; Region: NTR_netrin-1_like; cd03579" /db_xref="CDD:239634" polyA_site 3144 /gene="NetA" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaaacgaaca cacagtcgac tgtggacaag caggccgact tgacgtaacc gaacgagccg 61 aacgccgcga ttcgagagtg gagatttgag attggcgatt tggagatccg gagttttcga 121 ttcgcgcctg cgcaacgcga cgattttcga atatttcaag tgtgtgattt tttttccctg 181 tgactccagt gacttttgag atgagatcaa acgcctttga gtaacgaatt tggaaaacga 241 tttcaaaatc tgaatttttt tcaagtgtaa atttgtgatt ttggaacaat taaaaactaa 301 agattgtgaa cccaagtgaa tttggagatt aaaaacacag aactattttt ttcgagtgct 361 ttgtaaagat tttggaacat ttaaaaacta aagattttta acgctagtga ctgtgaaact 421 tacgaacatc atgcctccct tggcggcgat ccgtggcctc tggctcctgg ctgtcctggg 481 gatcctcaag gggattcccg gcaccgcggg cattcccaac gatcagtacc tgaagatgtt 541 tccgcaacag gcgccgcccc aggatgacct gtgctacgac agggcccgcg agccgaaggt 601 ctgcgttccg gaattcgtaa acgccgcctt ggatgcgccc gtggtggcca gctccacctg 661 tggatccatg ggatcatcgg ctaacccaca gcggtactgc gagttccagg agcacgagcg 721 atcctgtcac acctgcgatg cgaatgatcc cctacggagc tttcccgccc gctacctcac 781 cgacaacaac aactcgaaca atgtgacctg ctggcgcagt gagcccgtcc tcgggagcgg 841 cgacaatgtg accttgaccc tgtcgctggg caagaagttc gagctggtct acgtggtcct 901 gcagctgtgt ccccacgcac cgcgtcccga ctcgatggcc atctacaaga gcaccgatca 961 cggcctcacc tggcagccct tccagttcta cagctcccag tgccgccggc tcttcggtcg 1021 tccagcccgc caggcgacgg ggcggcacaa cgagcacgag gcccgctgct cggacctcac 1081 gcgtcccatg ggcggctcga ggatcgcctt caggactttg gagggcagac cgtcgggcaa 1141 ggatctggac tcgtcgcccg tcatgcagga ctgggtgacg gccacggaca ttcgggtggt 1201 gttccatcgc cttcagagag tgggggatcc gcaggccgtg ctctcgctgg atgccggcca 1261 cggaggagcc tcggtggatc tggccggggg caagtacagc gttccactgg ccaacggcgg 1321 atctggtccc actggcaaca acatcgagtt gtcccacgag ggcgcagggg gcagtagcgg 1381 cagcggcagt ggactgcact acgccatctc cgatttcgcg gtgggcgggc ggtgcaagtg 1441 caacggccac gcctccaagt gctccaccga cgccagcggg cagctgaact gcgagtgcag 1501 ccacaatacc gccggcaggg actgcgagcg ctgcaagccc ttccacttcg atcgcccctg 1561 ggcaagggcc accgccaagg agaccaacga gtgcaaggaa tgcatttgca acaagcacgc 1621 ccgccagtgc cgcttcaaca tggagatctt ccgtctgtcc caaggcgtct ccggcggagt 1681 ctgccagaat tgccgccact cgaccaccgg acgcaattgc caccagtgca aggagggatt 1741 ctacagggac accaccaagc cactcaccca ccgcaaggtt tgcaaagcct gcgagtgcca 1801 cccgatcggc tcatctggca agatctgcaa cagcaccagc ggtcaatgtc cctgcaagga 1861 cggggtcacc ggactgacct gcaaccgatg tgccagggga taccagcaga gccgctccca 1921 catcgccccc tgcataaagc aaccgccgcg aatgatcaac atgctggaca cccagaacac 1981 cgctcccgag ccggatgagc cccaatcctc gccagctgtg ggcggcgatc gcagtggcgc 2041 caccggaacg gccgcccagt cgcagtatta tcgcacagag ggcggcaggg aatgcggcaa 2101 atgcagagtc agcaccaaaa ggctaaacct aaacaagttc tgcaaaagag actacgcaat 2161 aatggccaaa gtaattggtc gcgatacgag cagcgaggcg gcggccagca gggaggctcc 2221 acgacgcgca atggatcccg acggggagga ctacgaaatg gaccaggatc agccgggatc 2281 gattacgccg gcggactatc actatcccaa tcccaactcc agtcccagcg acagcagcag 2341 cgaagtggag cgctacgatc tgcagattca ggccgtcttc aagcgcagca ggccaggcga 2401 aagcagcggc gcggggaacg tctacggaat gccgagtaca atcctaaaac gcggtcctat 2461 gacctggatc ataccgacta agcacctgga gtgccgctgc cccaagatca gagtaaacag 2521 atcctatttg atcttgggtc gggactcgga ggcgccaccc ggttacctgg gcatcgggcc 2581 gcactccata gtgatcgagt ggaaggagga ctggtatcga cgcatgaagc gcttccaacg 2641 gagggcgcgc acctgtgcgt aatcctccag ccgattatgc aatagtagtc ccaagaatct 2701 aggttctaag aaatgattga gagagcatgg agaacaatca aatcgtgtca ttttgttttt 2761 ttttttgtga ttttgtcaaa tgtcaatgtc aatttaaccg attttgtagc agttaaaaat 2821 caaactagct gtatttaatt tatttaatta acttcaattg ttacaaggca atcggtcatt 2881 gattaatata tcaatcaatc aatcaatcaa acccacgaaa gtatctatac atgtaatcta 2941 tgtaatctat atatacgact tgtattattc gctaaattaa gattcctgtc agcccagttt 3001 aagcatttgt gaacgattta cgtactaggg cagtctcgag aaagcgaaaa gagcgccagt 3061 aagcaataat ttatctgtaa gaagcacctt gatgcatgca tgactcgcaa aaaatcgtaa 3121 ttaataaata ttgtacagag caaa