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LOCUS XM_017139756 3626 bp mRNA linear INV 09-DEC-2024 (vap), transcript variant X2, mRNA. ACCESSION XM_017139756 VERSION XM_017139756.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139756.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3626 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3626 /gene="vap" /note="RAS p21 protein activator vap; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:108056092" CDS 301..3165 /gene="vap" /codon_start=1 /product="ras GTPase-activating protein 1" /protein_id="XP_016995245.1" /db_xref="GeneID:108056092" /translation="MADLIHLGNIDVVIQKDKPGSPTGCSDDGNLAGLGGMSGLGGMM AAGGIDLGDLAQELDHDEFDGPHMLNGERPAIIAPPESEWYHGRLDRYSAESRLRGSS KLGSYLVRESDRKPGSYVLSYYGRTGINHFRITAVCGDFYIGGRQFISLSDLVGYYTS CSDLLKRERLAIPVAPPEPVNDKKRVVAILPYTKMPETDELSFQKGDIFFVHNDMGDG WLWVTAHRTGEQGMIFRELVDDLDVSIDPNTVFPWFHPNCTKNEAVDMLVKAGPGSFL VRPSDNSPGDYSLFFHINNQIQRFRIEKKGVRYLMGGRTFECLDAVINRYRKEQIVEG HSLNHPVVNGIQPEFNQQYVVEKAAEKIYATLRECRDQIGLKKIKGIKHHGHLNKKSD KTTKWKQLYFALINDGSETQLCFYDNPKKTKPKGLIDLSCAYLYQCHDSLWERPYCFQ IVERALPCLATVTYLCAPSQESYVEWINSLKAQCDSQLSRAQKKVSRLRELRCLNLHV LEAHRLPFKLVPHPYCSISLNQVKVGKTRVKIAPEPVWEEEFVLDDVPPDVVSLTITL ISRGKRGKDSEVAELTIDLSSLKNGQETEGWYQLTGMTPMGEWGSLRLRMRYLDDLIM PCEEYSPLQQLLLESELYAVKALAELCHNDRVPLATALLRVFRQEKRETELIRMLCQA EVTRENETTTLFRGASLATTLMDLYMRTECSGFLQSAVSETVQRILESKQSAELNPTK MDVNDDACTNAEFLLQILDLVTQSIFTSPDACPRNVRFICSCLQKAVMAKWPTERLVR TRVVSGFIFLRLLCPALLNPRQFGLVSETPPMAATRSLVMVAKCLQNLANLIEFGGKE QYMEVVNPFILKNKERMIVFLDQLSSVNDPNQPLGMFVEQSTNLNSQDTGRELATLHH ICVSHSQELHELSNILSIKKLVTVTDMLTKHKLKYREMIS" misc_feature 490..798 /gene="vap" /note="N-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP); Region: SH2_Nterm_RasGAP; cd10353" /db_xref="CDD:198216" misc_feature order(571..573,628..630,691..693,697..699) /gene="vap" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198216" misc_feature order(694..696,772..774) /gene="vap" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198216" misc_feature 847..1023 /gene="vap" /note="Src Homology 3 domain of Ras GTPase-Activating Protein 1; Region: SH3_RasGAP; cd11788" /db_xref="CDD:212722" misc_feature 1054..1278 /gene="vap" /note="C-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP); Region: SH2_Cterm_RasGAP; cd10354" /db_xref="CDD:198217" misc_feature order(1078..1080,1132..1134,1195..1197,1201..1203) /gene="vap" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198217" misc_feature order(1198..1200,1276..1278) /gene="vap" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198217" misc_feature 1435..1752 /gene="vap" /note="RAS p21 protein activator (GTPase activating protein) 1 Pleckstrin homology (PH) domain; Region: PH_RASA1; cd13260" /db_xref="CDD:270080" misc_feature 1795..2166 /gene="vap" /note="C2 domain present in RAS p21 protein activator 1 (RasA1); Region: C2_Ras_p21A1; cd08400" /db_xref="CDD:176045" misc_feature 2158..3162 /gene="vap" /note="Ras GTPase Activating Domain; Region: RasGAP; cl02569" /db_xref="CDD:470620" misc_feature order(2263..2265,2371..2373,2377..2379,2383..2388, 2392..2394,2401..2403,2413..2415,2698..2700,2722..2727, 2734..2739,2746..2748,2809..2811,2818..2823,2830..2832, 2842..2844,2848..2850,2863..2868) /gene="vap" /note="RAS interface [polypeptide binding]; other site" /db_xref="CDD:213340" polyA_site 3626 /gene="vap" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaattactaa acaaaatttg ttagacccca aaagtccttg tcagaggaac tggacaatac 61 tagtgaattt atcccagttg gttttgcgtg gttaccgcta ccgatatggc gaagattgtg 121 tatttatgct tagcacataa tcatcacgga aaactgagta caatcaccaa agcttccgtt 181 tttcctaagt aaacgcaaag acatcgttgc tatatgtggc ttttatcaaa gggaatttcg 241 ctgaaagtta aatatagatt aagattccca ttcactgagc agagatcata aaggaagatc 301 atggcggacc taattcactt gggaaacata gatgttgtca tccagaaaga taagcccggc 361 tcgccgacgg gctgctcgga tgatggaaac ctggcaggtc tgggcggcat gagtggattg 421 ggcgggatga tggccgccgg tggcattgat ctgggtgact tggcgcagga attggatcac 481 gatgaattcg atggaccaca catgctaaat ggtgaacgtc cagcgattat tgctcctccc 541 gaaagtgaat ggtaccacgg acgacttgat cgttactcag ctgaatcacg tctgcggggc 601 agcagtaaac tgggaagcta cttagttcgt gaaagtgacc gcaagcctgg ctcctatgtt 661 ctaagttatt atgggcgtac cggcataaac cattttcgga tcacggctgt gtgcggagac 721 ttctatatcg gtggacgaca attcatatcg ttgagcgatc tggttggcta ctatacctca 781 tgcagtgacc tactgaagcg cgaacgattg gccataccag tggctccgcc ggagccagtt 841 aatgataaga agcgagtcgt tgccatcctg ccttatacaa aaatgccaga gaccgatgag 901 ctgagcttcc agaaaggtga tattttcttc gtgcacaatg acatgggcga cggttggctg 961 tgggtcactg cccatcgtac tggcgagcag ggaatgattt tccgagagct tgtggatgat 1021 ctggatgtat ccatcgatcc gaataccgtc tttccgtggt ttcatccgaa ttgcaccaaa 1081 aacgaagctg tcgatatgtt ggttaaagct ggacccggca gcttcttggt tcgccccagc 1141 gacaactcac cgggcgatta ctccctcttt ttccatatta acaaccagat ccaacgattt 1201 cgcatcgaga agaagggcgt gcgatatttg atgggtgggc ggacatttga atgcctcgat 1261 gcggtgatta atcgttaccg caaggagcaa attgtcgagg gccattcgct caatcatccg 1321 gttgtcaatg gcatacagcc agagttcaat cagcaatatg ttgtggaaaa ggctgcggaa 1381 aagatatatg ccacactgcg cgagtgccgt gaccaaatcg gtctgaagaa gatcaaggga 1441 atcaaacatc atgggcattt gaacaagaaa tcggacaaaa cgacgaaatg gaagcaacta 1501 tatttcgctc taatcaacga tggctccgag acgcaacttt gcttctacga caatccgaag 1561 aagaccaagc cgaagggtct gatcgatttg tcatgtgctt acctctatca atgtcacgat 1621 tccctctggg agcgtcccta ttgctttcaa attgtggaaa gggctctgcc ctgtttggcc 1681 actgtgacat atctgtgtgc tcctagtcag gaaagctacg tggagtggat caattcgctg 1741 aaggcccaat gcgactccca gctaagtcgg gcccagaaga aggtctcacg gctacgcgag 1801 cttcggtgtc tcaatctgca tgtgctagaa gctcatcgct taccatttaa attagtgcca 1861 catccatact gcagtatttc actcaatcaa gtcaaagtgg gtaaaacacg tgtcaaaatt 1921 gcacccgaac cggtttggga ggaggaattt gtactggatg acgttccccc agatgttgtc 1981 tccctaacca ttacgttaat atcgcgcggt aaacgcggca aagattcgga agtggccgag 2041 ctaacgatcg atttgtctag tctgaagaat ggccaagaga ctgagggctg gtaccagctc 2101 accggaatga cgccgatggg cgaatggggc tcgctgcgtc tgcgtatgcg ttacctcgac 2161 gatctgataa tgccctgcga ggagtacagt ccactgcagc aattgctact cgaatcggag 2221 ctgtatgcgg tgaaggcgct ggcggagctc tgtcacaacg atcgagtgcc attggcgacg 2281 gctctgttgc gagtctttcg gcaggagaag cgcgagacgg agctaattcg aatgctgtgc 2341 caggcggagg tgacacgcga aaacgagacg acgacacttt tccggggcgc ctccttggcc 2401 accacactaa tggatttgta tatgcgaacc gaatgcagtg gattcttgca gtcggcggtc 2461 agcgaaaccg ttcagcgcat tttggagagc aagcagtcgg cggaattaaa tccaacgaaa 2521 atggacgtca acgatgatgc ctgcacgaat gccgagtttc tgctgcaaat cctcgatctg 2581 gtcacccagt cgatatttac ttcaccggac gcctgtcccc ggaatgtgcg cttcatttgc 2641 agctgcctgc agaaggctgt gatggccaag tggccgacag agcggctggt tcgcacccga 2701 gtcgtctccg ggttcatatt cttgcgcctc ctatgcccag ccctgctgaa tcctcgacaa 2761 tttggcctgg tcagcgagac gcctccgatg gcggccactc gttctttggt catggtcgcc 2821 aagtgtcttc aaaatttggc caacttgatt gagtttggcg gcaaggaaca atacatggag 2881 gttgtcaatc cgtttatttt gaaaaacaag gaacgcatga ttgtcttctt ggatcaactg 2941 tcctccgtca acgatccgaa tcaaccgctt ggaatgtttg tcgaacaaag tacaaatctg 3001 aattcacaag acactgggcg cgagctggct accttacatc acatctgtgt atcgcattcg 3061 caagagcttc acgagctatc caacatactt tcaattaaga agctggtcac agtaacggac 3121 atgttgacca agcataaact gaagtaccgc gagatgatca gctaaaataa agataataaa 3181 cgcgatgtct tcttatctac acaagtccct tcataccttt ttataacaaa tatttatatg 3241 tgtatactat tagaatacat gataacaata agaactcata ataactggtt gaattgtatt 3301 ggaatagtaa acagaagaat atcatttata aaaattattt atacgaaatg aaatattata 3361 tttaactgac aggtatatgc atttatttat tattaaaaat tacttatata atacactagc 3421 ttacacggag tactctccgt atagccgcaa aaaactcaga aattatacat ggttttgctt 3481 ttgatattgt gttttaaatt tacagaaaca gaaaccactt ttatccaaaa tccatacatt 3541 tttttcgaga caaataacgc ataaaatcga aataaattaa tgaatttata aaaaaaagag 3601 tgcaaaagac ttcctctgaa aaaata