Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017139661 5432 bp mRNA linear INV 09-DEC-2024 (pcm), mRNA. ACCESSION XM_017139661 VERSION XM_017139661.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139661.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5432 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5432 /gene="pcm" /note="5'-3' exoribonuclease pacman; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056050" CDS 351..4928 /gene="pcm" /codon_start=1 /product="5'-3' exoribonuclease 1" /protein_id="XP_016995150.3" /db_xref="GeneID:108056050" /translation="MGVPKFFRYISERYPCLSELAREHSIPEFDNLYLDMNGIVHNCS HPDDNNIHFHLEEQQIFQDIFNYVDKLFYLIKPQRLFFLAVDGVAPRAKMNQQRSRRF RSAREAEQLEAKAAQRGERREHERFDSNCITPGTEFMVRLQDGLRAFLKTKISTDPLW QRCTVILSGQETPGEGEHKIMDYIRYMKAQPDFDPNTRHCLYGLDADLIILGLCTHEL HFVVLREEVKFGKNIKRASVEETRFFLLHLGLLREYLELEFDALSTPQQKLDVAQLID DWVLMGFMVGNDFIPHLPCLHISSNALPLLYRTYIRIYPSLGGNINENGKLNLRRLQI FMSALTEVELEQFKEHADDLKYMNAKTEAFDVDVADIRGNESYDTDLGALISESMKLY EDDSEEDWSDEEAALMGEFKNYKRNYYRNKFKREAQGQLLDELGHHYVNALQWVLDYY YRGVQSWDWYYPFHYAPFISDLKNIEQVQIDFQLGTPFLPFQQLLAVLPAASCKLLPV AYHDLMLQPSSPLAEFYPLEFDSDLNGKKHDWEAVVLIPFIDERRLLAAMRNCESLLT EEERERNRHGPMYLYNHSTESQGPMEQQPPLRALANLFCTEVAKWSREIALNLPHSVC VELPNAARHVFFPGFPTMQHLPFDFELRHDRVKVFEQVSRNQNMVLKPRRRQLEDTLE AVAGQYLEQVVHIGWPHLIKAKVVRVATRDRRIDEEGIVPNESRRFDSECKTLQEHFT TRMGIQFANYDVLVYVRTFAGSSTEFGAKGVIKVKDAWSSTVTGYPAQGVVAELAVKE SLRKQFRKVEDFFPAGSSIFFIGNPYYGSEGTVQDPLLAYSCGRIQVNIRVRPEPDVQ EARALQEERDRDLLNTYEVCHLLNINGRALGRLTGTVWVVLGPRREKMENVAKHNIGL QLKYPRQNEERAGYCCRSGNQWFYSSLALDLMRDYCERYPDVVAFFGVSNDRGEYVFE QDVFPDAVGEHRVEDLANWVRQQPHMKVERISCGSKTVCRETVELLMAAVDELRSLPV KDVKLQVKPHLLIKPNVTLPEVYRSRRPVRLFDRVVIVRTIYMVPVGIKGTVIGIHPV TDPNPVRLECVHAVDTFCEVLFDKAVPNCNDIHGIAQDRVYKVPENALVVIYTNDQSQ KQNESVQQATRTSQQRESQQRESQQRESQQKASNSRYVTAAGSNWVPITMKTQVSDEF VKTSGQSGQLEREMPEQKPSNWRDRANKSQSASDNWRQNPARQQGGAAPPPVKAAPPS TATATPTPQAQTLALMSLLGLKKDQEPAPPPAPLPGQMPANLPKPPLFWQQEAQQSDR IKSQQWYRSAHTGAQMVDQQIRQQQQQQQQRMQQPPAAVLLAPFNKGNQSSSSMSSFN NNVRMMVAPSSYQPYPQQQQSQYQPQFQQLQEINNVPQQPRYSSIQDFVPIQAYRPRK AKRQDSQPHTTETTGSSSLPEKSTNEQQAVGLMQTLNIQPSTSQSESSAANQSGGTDE SVSSSSSQAIKPRKQRVPRIGAKFDLEYIMH" misc_feature 351..2846 /gene="pcm" /note="5'-3' exonuclease [Replication, recombination and repair]; Region: XRN1; COG5049" /db_xref="CDD:227382" misc_feature 2769..3020 /gene="pcm" /note="Exoribonuclease Xrn1 D2/D3 domain; Region: XRN1_D2_D3; pfam18334" /db_xref="CDD:436419" misc_feature 3528..3761 /gene="pcm" /note="Xrn1 SH3-like domain; Region: SH3_12; pfam18129" /db_xref="CDD:465661" misc_feature 4242..4307 /gene="pcm" /note="5-3 exonuclease XRN1 DCP1-binding motif; Region: XRN1_DBM; pfam18245" /db_xref="CDD:408065" polyA_site 5432 /gene="pcm" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaagcatttt cattaaaaaa aacttgcagt ttacacgttt ttctgttatt gctttccaag 61 aattgcactg ctgccagttt ggtgcgtttg ctggtttacc ttgagacccc aactatgcag 121 attggagctg aaaacaccgc ttctattata tccctgtttt caaacttagc tttggccttg 181 ccacggggtt aaaacgtagt ggcaactcca cgcctactgg caaatactac ccaatcaata 241 cgactagttg ataaaaaggc cacaaaacaa acagcacaca cggaaattcg gcaggaaaac 301 agaggggaaa tcagcaggta atcagcaagg aggagttgca ggcagacaca atgggagtgc 361 ccaagttctt tcgctacatc agcgagcgat atccatgcct cagcgagttg gcgcgggagc 421 acagcatccc cgagttcgac aacctgtacc tggacatgaa cggcatcgtg cacaactgct 481 cgcatccgga cgataacaac atccacttcc acctggagga gcagcagatc ttccaggaca 541 tcttcaacta cgtggacaag ctgttctatc tgatcaagcc gcaaaggctc ttcttcctcg 601 cagtcgatgg ggttgctccg cgtgccaaga tgaaccagca gcgcagccgg cgcttccgtt 661 cggcccgcga ggcggagcaa ctggaggcca aggcggcgca gcggggagag aggcgggagc 721 acgagcgctt cgatagcaac tgcattacgc ccggcaccga gttcatggtg cggctgcagg 781 acgggctgcg tgccttcctc aagaccaaaa tctccaccga tccgctgtgg cagcgctgca 841 cggtgatcct cagtggccag gagacgcccg gcgagggtga gcacaagatc atggactata 901 tcaggtatat gaaggcccag ccggactttg atcccaatac gcgacactgc ctgtacggcc 961 tggacgccga tctgatcatt ctgggcctct gcacccacga actgcacttt gtggtgctgc 1021 gcgaggaggt gaagttcggg aagaacatta agcgagcctc ggtggaggaa acgcgcttct 1081 ttctcctcca tttgggcctg ctgcgcgagt atctggagct ggaatttgat gctctcagca 1141 ccccgcagca gaaattggac gtggcgcagc tgatcgacga ctgggtgctg atgggcttca 1201 tggtgggcaa cgattttata ccccatctgc cctgcctgca catctcctcg aatgctctgc 1261 ccctgctgta tcgcacctac atacggattt atccctcgct gggcgggaat atcaacgaga 1321 acggcaagct caacctgcgc cgcctgcaga tcttcatgtc cgccttgacc gaggtggagc 1381 tggagcagtt taaggagcat gccgacgacc tgaagtatat gaatgccaaa acggaggcgt 1441 ttgacgtgga tgtggcggat attaggggca acgagagcta cgataccgat ctgggggcct 1501 tgatcagcga gagcatgaag ctctacgagg acgacagcga ggaggactgg agcgacgagg 1561 aggccgctct gatgggcgag ttcaagaact acaagcgcaa ctactaccgc aacaagttca 1621 agcgggaggc gcagggccag ctgctcgatg agctgggtca ccactacgtg aatgcgctgc 1681 aatgggtgct cgactactac taccgcggcg ttcagtcctg ggactggtac taccccttcc 1741 actatgcccc cttcatcagc gatctcaaga acatcgagca ggtccagatc gactttcagc 1801 tgggcacgcc attccttcca ttccagcagc tcttggcggt gctcccggcg gccagttgca 1861 agctgctgcc cgtcgcctac cacgacctca tgctgcagcc cagcagtccg ctggccgagt 1921 tctatccgct ggagttcgac agcgatctta atggcaagaa gcacgactgg gaggcggtgg 1981 tactgattcc cttcatcgac gaacggcgcc tgctggctgc gatgcgtaat tgcgaatcgc 2041 tactcaccga ggaggagcgg gagcgcaatc gtcatggtcc catgtacctg tacaatcaca 2101 gcaccgagtc gcagggaccc atggaacagc agccgccgct gcgggcactg gccaatctct 2161 tctgcaccga ggtggccaag tggtcgcgcg aaatcgcctt gaatctgccg cacagcgtct 2221 gcgtggagct gccgaatgcg gcgcggcatg tcttcttccc gggctttccc accatgcagc 2281 atctgccctt cgattttgag ttgcgccacg atcgcgtcaa ggtgttcgag caggtgagcc 2341 gcaaccagaa catggtgctg aagccgcgcc ggcggcaact ggaggacacc ctggaggcgg 2401 tggccggtca gtatctggag caggtggtgc acatcggctg gccgcatctc atcaaggcca 2461 aggtggtgcg cgtggccacg cgggatcgtc gcatcgacga ggagggaatc gtcccaaacg 2521 aatcgcggcg cttcgactcg gaatgcaaga cgctgcagga acatttcacc acccgcatgg 2581 gcattcagtt tgccaactac gatgtgctcg tctacgtgcg cacctttgcc ggcagctcga 2641 cggagtttgg tgcgaagggc gttatcaagg tgaaggatgc ctggagcagc accgtcaccg 2701 gttatcccgc ccagggcgtc gtggccgagt tggccgtgaa ggaaagcctg cgcaagcagt 2761 tccgcaaggt ggaggatttc tttcccgccg gcagctcgat cttcttcatc ggcaatcctt 2821 actacggcag cgagggaacg gtgcaggatc cgctgctcgc ctacagttgc ggtcgcattc 2881 aggttaacat acgtgtgagg cccgaaccgg atgtccagga ggccagggca ctccaagagg 2941 aacgcgatcg ggatctgttg aacacctacg aggtctgcca tctgctgaat atcaatggac 3001 gagccttggg tcgcctcacc ggcaccgttt gggtggtcct cggtccgcga cgcgagaaaa 3061 tggagaacgt ggccaagcac aacatcggcc tgcagctgaa gtatccgcga cagaacgagg 3121 agcgtgccgg ctactgctgc cgctcgggca accagtggtt ctactccagt ttggccctcg 3181 atctcatgag agattattgc gaacgctacc ccgatgtggt ggcctttttc ggcgtgagca 3241 acgatcgcgg cgagtatgtg ttcgagcagg atgtctttcc ggatgccgtg ggcgagcatc 3301 gcgtcgagga tctggccaat tgggtgcgcc agcagccgca catgaaggtg gagcgcattt 3361 cgtgtggctc gaagaccgtg tgccgcgaaa ctgtggagct gctgatggcc gccgtcgatg 3421 agctgcgctc gctgcctgtc aaggatgtca agctgcaggt gaagccgcat ctgctgataa 3481 aaccaaatgt cacgctgccc gaagtctatc gttcgcgtcg cccggtgcgc ctcttcgatc 3541 gcgtcgtcat cgttcgcacc atttacatgg tgccggtggg cattaagggc accgtgattg 3601 gcattcaccc ggtcactgat cccaatccgg tgcgcctgga gtgcgtccat gcggtggaca 3661 ccttctgcga ggtgctgttc gacaaggcgg tgccgaattg caacgatatc catggcatcg 3721 cccaggatcg cgtctacaag gtgcccgaaa atgcactggt ggtcatttac accaacgatc 3781 aatcacagaa gcaaaacgag agtgttcagc aggcaacgag gacctcgcag cagcgggaat 3841 cgcaacagcg ggagtcgcaa cagcgggagt cgcaacagaa ggcgagcaac agtcgctatg 3901 tgacggcagc tggctccaat tgggtgccca tcaccatgaa gacgcaggtc tccgatgagt 3961 ttgtgaagac gagtggacag tcgggacagc tggaaaggga gatgccggag cagaagccct 4021 ccaactggcg ggatagggct aacaaatcgc agtctgcctc ggataattgg cgtcagaatc 4081 cagcacgaca gcaaggagga gctgctcctc ctccggtgaa agcagcacca ccttccactg 4141 ccacagcaac tcccacgccg caggctcaaa ccttggctct gatgtctctg ctgggcttga 4201 agaaggatca ggaacctgct cctccgccag ctccactgcc cgggcaaatg cctgctaact 4261 tacccaagcc accgctcttc tggcagcagg aggcgcagca gagtgatcgc atcaagagcc 4321 agcagtggta ccgaagtgct cacacgggag cgcagatggt tgaccagcaa ataaggcagc 4381 agcagcagca gcagcaacag cgaatgcagc agccaccggc agctgtgtta cttgctccat 4441 ttaacaaagg aaatcagagc agcagcagca tgagttcctt caacaacaac gtgcgcatga 4501 tggtagctcc ttcatcctat cagccgtatc cacagcaaca gcagtcacaa tatcagccgc 4561 aattccagca gctgcaggag atcaacaatg tgccacagca gccgcgttac tcctccatcc 4621 aagactttgt gcccatacag gcgtatcggc cgaggaaggc aaagcgtcag gattcacagc 4681 cacataccac agaaaccacc ggcagttcta gtctcccgga aaagtcaacg aacgaacagc 4741 aggctgttgg gctgatgcaa acgcttaata ttcagccctc gacatcacag tccgaatcta 4801 gtgcggccaa tcaatcaggc ggaacggatg aatccgtatc atcgtcttca tcccaggcca 4861 tcaaacccag gaaacagcga gttcctcgca ttggagccaa attcgatttg gaatatataa 4921 tgcattaagg acgactccag gccactcaat gaattgatct taaaaaaaca aagcaacccc 4981 gaaaaccttg aaatttccca actctgtatt ctaagtttca aaacccacct aacgatatgc 5041 aaaaagttgt ttagaacaga acagaccctt tatatacctt atttttcatt tcctagtcgt 5101 cttttgcgag gcaatcgaag tagcgccgca tcttaaggac tgtattttcc aacgaaaatt 5161 gttgattttg ttagtaatga aatgagagac tgactcatct tattctatta tttttttgta 5221 ataaactcga ctttttccgc acacccctct tgtatttaat tcgattgaaa attacaaaaa 5281 agaccctata taatatagaa aagacccttg gtagatttac tggatgttat acatagtata 5341 tgtgtcgtgt acatgaatta tataaaggaa cttttggctc tgtaagagat gttggatcga 5401 aataaagttg gacacattaa aaatgtatac aa