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LOCUS XM_017139639 1539 bp mRNA linear INV 09-DEC-2024 complex I, assembly factor 6 homolog sicily (sicily), mRNA. ACCESSION XM_017139639 VERSION XM_017139639.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139639.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1539 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1539 /gene="sicily" /note="NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 homolog sicily; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056030" CDS 17..1060 /gene="sicily" /codon_start=1 /product="NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 homolog" /protein_id="XP_016995128.3" /db_xref="GeneID:108056030" /translation="MFREKAQMRRLVRNWNCRLLLNAKSGQEIVQTGYAGVHQQAKSE SESCAQEKGGGARAADKNGYAAKHCMSLVEKYDHENYLCTLLLPRELRRAAFALRAFN VEVSRSVSGHQIEPQIARMRLKFWHDSIDKCFEAETQRSYAEDQPVLRELKHTVGSRK LNKVYLRRLVTARERPASQGFESIRELEEYAEQAFSSLLLLLLEVGGVRDLQVDHAAS HLGKAQGIATMLRAIPLAGRQQAVCVPLEVLVRHGVSQERIIRSKSDDKGVEECIFEV ASAANTHLKLARQLHEQVSPQVRKIFLSAVATDAYLERLRRANFLLTHKSCVGRDSLL PARLFWKSLLNRY" misc_feature 239..988 /gene="sicily" /note="Squalene/phytoene synthase; Region: SQS_PSY; pfam00494" /db_xref="CDD:425717" misc_feature order(254..256,311..313,320..325,332..334,344..346, 686..691,698..700,710..712) /gene="sicily" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:173830" misc_feature order(332..337,344..346,698..703,710..712) /gene="sicily" /note="substrate-Mg2+ binding site [active]" /db_xref="CDD:173830" misc_feature 332..346 /gene="sicily" /note="aspartate-rich region 1; other site" /db_xref="CDD:173830" polyA_site 1539 /gene="sicily" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acactgcccg gaacatatgt tcagagaaaa agcacagatg cggcgcctgg tgcgaaattg 61 gaattgccga ttgttactca acgccaaatc cggccaagaa atcgtgcaaa ctggatatgc 121 cggcgtccat cagcaggcca agtccgagtc cgaatcctgt gcccaggaga aaggcggagg 181 agcacgagcg gcggataaga atggttatgc ggccaagcac tgcatgagtt tggtggagaa 241 gtacgaccac gagaactacc tgtgcaccct gctgcttccg agggagctgc gccgtgccgc 301 cttcgctctg cgggcattca acgtggaggt ctccagatcg gtcagcggtc atcaaatcga 361 gccgcaaata gctcgaatgc gactcaagtt ctggcacgac tccatagaca aatgcttcga 421 ggccgagacg cagcgatcct atgccgagga ccagcccgtc ctgcgcgaac tcaagcacac 481 ggtgggcagc cgcaagctga acaaggtcta cctgcgtcgc ctggtcacgg cacgcgaacg 541 tccggccagc cagggattcg agtcgatacg cgaactcgag gagtacgccg aacaggcctt 601 ctcctcgctg ctgctcctgc ttttggaggt gggcggagtg cgggacctgc aggtggatca 661 cgcagcctcc catttgggca aagcccaggg aatcgccacc atgctgcggg ccattccgct 721 tgcgggacgc cagcaggcgg tctgcgtgcc gctcgaggtg ctcgtgcggc atggcgtcag 781 tcaggagcgc atcatacgct ccaaaagcga cgacaagggc gtcgaggagt gcatattcga 841 ggtggccagt gccgccaaca cgcacctaaa gctcgcccgg cagctccacg agcaggtgtc 901 gccccaggtg cgcaagatct tcctgtccgc cgtggccacg gatgcctatc tggagcgcct 961 gcgtcgcgcc aacttcctgc taacccacaa gagctgcgta ggacgcgact ccctgctgcc 1021 cgcacgtctt ttctggaagt ccctgcttaa tcgctactga tggcagttaa tttagtagta 1081 gtttaggctt aatgcctcat tgttgacttc tttaattaaa actgttttaa aatgactgta 1141 aagaaaatct ctggtatcga tggaatcatt tttctcaagt tcttaaagct acaagagtta 1201 attttttaat ttattttggt ctatttgtga ttgttttatt taataattga ttttttattt 1261 tattatgttc gtatatttat taatatttcc gagacccatt taaaatcaaa caagaaagaa 1321 aaagttctta aagctacaag agttcatttt tgatttattt tggtcaatta gcgattattt 1381 tatttcataa tttattttgt ttgttttatt atgttcttat atttattatt tcctagtccc 1441 atttaaaatc catctagatt ctagaacttt attttttttt atcataatag caaatgaatg 1501 aaaatatggg attcagtaga aataaaaatt caaaaagca