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LOCUS XM_017139323 5633 bp mRNA linear INV 09-DEC-2024 1A (RhoGAP1A), transcript variant X3, mRNA. ACCESSION XM_017139323 VERSION XM_017139323.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139323.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5633 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5633 /gene="RhoGAP1A" /note="Rho GTPase activating protein at 1A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055801" CDS 372..4595 /gene="RhoGAP1A" /codon_start=1 /product="active breakpoint cluster region-related protein isoform X2" /protein_id="XP_016994812.2" /db_xref="GeneID:108055801" /translation="MSVFDDFQRLWMQRFPQSSLSDAWEQDVRASLERHKLRILELTK ELEQETLYVEYLERLLSDVEKYRASGGDPTALFEAASGSGGTNNGGTTNGAPPGGGTT NVDKEFKSSLNLRESSTSSGGKDKDRLSLNTDNKYTTHTNAAGSGSGGGTAAGAGAGS TSGPLHSAPPTGKRIAELNFEREERDKDSGNEKDTNGALQQCITELAASIKAQPDNGA SSTGGGGAGGAGGSTDGGDKEKQPLRKSTSQYVTVIQVKEAKEKEGDDGGASDPQQSQ QPTPPSTFARYAEASAPPLSPSLTSYAAHVEAKKKMPPRPPPKNIRRVEPPTIPSQQQ QQLSSSPKRETPFVGSSMPLPSSSGGSLSSDSPGNSLERNIKPSDILRQKSSENLDSK YAANRKTTPELGKFVNVNNPELMEELGRKMVGKTDSLEQAKRNDSSPSGGGSLGRTAS TPGRSLTPGRTGVGASPTGSLNKTAKLAAADSSSTSSLEKKSRNCLQASDAEGGTGTN QRSVGSKESLASQGISEVIKSYESVSSLSSESAKAAATAAASQQSAADNEPYYDSVPL DNGDGEYVFIKPGRTGSSSSRDDLSTPGSSTLPLANPADPESPGRTSNYVNIDYFLQQ SNETRSSSLDSDGEYEGPPILRTISHDEQTTSQTTPGALRKVSGNARGAKIRSILSSI IQSETIYVECLNKMMQYKKAIHATLNTSQPVIKEEEENTIFFKIDELHDLHTAFLSDL KTIVSHEGGDVLIGEPFRRLADMFDLYSAFLHNYKNAIETVKKCSANNPQFKKIVSTI VVNLQTEQSLTLEDLLHKPVARVQINALVFNDLLRETPMAHPDHQPLRQAQKIIQMFL NQFNVVNQRLPSESNRNLRRMVRNSFIVELVDGHRKLRHLFLFNDVIACAKYKALGRD RIDYELKWFIPLKEISIIEEADPAAELKESSPANISQVKRNLRSVRDQLAMEVANSGG GGVRSGDKYRRKLADLESQLVLATPNLVLRLANKANNKTMTFFLSSDFERTQWIDSIT SLKQKCNLPGANTINSLEVTAFIVAMQKGMKTEMGSYLMRNTNDESLLVGDLHMAVQG LGGLEQAADLYICIEVDSYGHYFRKATTKMVCRSQTPLWNESFMLELEGSQNVRILLY EAKERPLLRAKHILKLSLSWLTETTQPRTIKLSETLELGCSFRFVPGELCRATTKPGA LFGAKMSQVLKREKRDIPFIISACIREVERRGMLEVGCYRVSGSASDLAKLKKAFESD AYEAEQLLREVDIHSVTGILKTFLRELPEALFTDQLYPRFFDTFSAFSNNNESTRINE LLKVFEELPQVNKASINSILDHLIRVHEKETDNKMSLHNLAMVFGPTLLRPGQTQVKQ KDPLAASTVDVMAQAGILYCFLQARIKKD" misc_feature 2403..2951 /gene="RhoGAP1A" /note="Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Region: RhoGEF; smart00325" /db_xref="CDD:214619" misc_feature order(2412..2414,2424..2426,2715..2717,2802..2807, 2814..2819,2823..2828,2835..2840,2847..2852,2859..2861, 2937..2939,2949..2951) /gene="RhoGAP1A" /note="GTPase interaction site [polypeptide binding]; other site" /db_xref="CDD:238091" misc_feature 2931..3491 /gene="RhoGAP1A" /note="Breakpoint Cluster Region-related pleckstrin homology (PH) domain; Region: PH_BCR_arthropod; cd13368" /db_xref="CDD:270174" misc_feature 3615..>3812 /gene="RhoGAP1A" /note="C2 domain; Region: C2; cl14603" /db_xref="CDD:472691" misc_feature 3987..4574 /gene="RhoGAP1A" /note="GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to...; Region: RhoGAP; cl02570" /db_xref="CDD:470621" misc_feature order(4101..4103,4218..4220,4230..4232,4446..4448, 4455..4460,4548..4550) /gene="RhoGAP1A" /note="GTPase interaction site; other site" /db_xref="CDD:238090" misc_feature 4101..4103 /gene="RhoGAP1A" /note="catalytic residue [active]" /db_xref="CDD:238090" polyA_site 5633 /gene="RhoGAP1A" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atacttgctg ccatcgcaat cgccaacgaa atgaaatcgt tttttttgta atataaaatc 61 ggctgggata tttatgtgta gtgtatatat gttcaatatc caatcaatgt gaaagtgtat 121 cgtgaaaata gtgaatgaaa atcgtggcgg aaaatgaaac gcggtgaagg cgacaacgca 181 caactggtgc tcgttgttac ataaaaggca acctcgccct ctcttcgtca tcatctcgag 241 gaattatcat cattaatata tagcatcatc ggaaaccgca tctctggagt gaggaataag 301 tgcaggcaaa agcagaagaa tcgaaggagg aggaggaaaa gaaggagaag gaggagcacc 361 acctggtcac catgagcgtc ttcgacgact tccagcgctt gtggatgcag cgcttcccgc 421 agagctcgct atccgatgcc tgggaacagg acgtgcgggc gagtctcgag cggcacaagc 481 tgcgcatcct tgagctgacc aaggagctcg aacaggagac cctctatgtg gagtacctgg 541 agcgcctgct gtccgatgtg gagaagtatc gcgcctctgg cggggatccc acggccctct 601 tcgaggcggc cagcggaagt ggtggcacca acaacggtgg caccaccaat ggagcaccgc 661 caggcggagg caccaccaat gtggacaaag agtttaaatc cagtttaaat ctgcgcgagt 721 cctcgacgtc gtccggcggc aaggacaagg atcgcctgtc gctcaacacg gacaacaagt 781 acacaacaca cacgaatgcc gctggcagtg ggagtggcgg cggtacggca gcgggagcgg 841 gggcgggatc caccagcggt ccgcttcact ctgccccgcc gacgggcaaa cggatagcgg 901 agctgaattt cgagcgagag gagcgcgaca aggacagtgg caacgagaag gacaccaacg 961 gagctctgca gcagtgcatc acagagttgg cggcctcgat aaaagcccag ccggataatg 1021 gggcatcttc aacaggagga ggaggagctg gaggagcagg aggatcaacc gatggcggag 1081 ataaggagaa acaaccgctg cgcaaatcca cctcgcaata cgtcaccgtc atccaggtga 1141 aggaggccaa agagaaagag ggcgacgatg gaggagccag tgacccacag cagtcgcagc 1201 agcccacgcc gccctcaaca ttcgctcgct atgcggaggc cagtgctcct ccgctgtcgc 1261 cgtcgctcac ctcgtacgca gcccacgtgg aggccaaaaa gaaaatgcca cccagacctc 1321 cgccaaagaa cattcgccgc gtggagccgc ccaccattcc cagccagcag cagcagcagc 1381 tgtcgtcgtc gccaaaaaga gagactccct ttgtgggcag ctcgatgccg ctgcccagca 1441 gctccggcgg cagcctctcc tccgacagtc cgggcaattc gctggagcgc aacatcaagc 1501 cctcggatat tctgcgccag aagtcgtccg agaatctgga ttccaaatat gcggcgaatc 1561 gcaaaacaac accggagctg ggcaaatttg tgaatgtcaa taatcctgag ctaatggagg 1621 agctgggccg caagatggtg ggcaagacgg acagtctgga gcaggccaag cggaatgact 1681 cctcgccctc gggcggcggc agtctgggac gcactgcctc cacaccgggg cgatcattga 1741 caccgggacg aacgggcgtc ggggcctcgc ccacgggtag cctaaacaag accgccaaac 1801 tggcggcagc ggacagcagt tcgacgagca gtctggagaa gaagtcgcgc aactgcctgc 1861 aggccagcga tgcagagggt ggaacgggaa cgaatcagcg gagtgtgggc tccaaggagt 1921 cgctggcatc gcaaggcata tcagaggtga tcaagagcta cgagagtgtc tcctcgctga 1981 gttcggaaag cgccaaggcg gcggcgacgg cggcagcatc ccagcaatcg gcggcggaca 2041 acgagccgta ctacgatagc gtgccgctgg acaacggcga cggggagtac gtgttcatca 2101 agcccggtcg caccggttcc tcctccagtc gcgatgattt gtcaacgccc ggcagcagca 2161 ctctgccgct ggccaatccg gcggatcccg aatctccagg caggacctcc aactacgtca 2221 acatcgacta cttcctacag caaagcaatg agacgcggtc cagttcgctg gacagcgacg 2281 gggagtacga gggtccgccc atattgcgca ccatttccca cgacgagcag accacgtcac 2341 aaactacgcc gggagcactt cgcaaggttt ctggaaatgc ccgcggtgcc aaaatacgat 2401 ctatactcag ctcaatcatt cagagcgaga cgatctacgt ggagtgcctc aataaaatga 2461 tgcagtacaa gaaggcgatc cacgctaccc tgaacacatc gcagcctgtg atcaaggagg 2521 aggaggagaa cacgattttc ttcaagatcg acgagctcca cgatctgcac accgccttcc 2581 tgtccgacct gaagacgatc gtttcccacg agggcggcga tgtgctgatc ggtgagccct 2641 tccgtcgact ggccgatatg ttcgatctgt atagcgcctt cttgcacaac tacaagaacg 2701 ccatcgagac ggtgaagaag tgcagtgcga acaatccgca gttcaagaag atcgtctcca 2761 ccatagtggt caatctgcag acggagcaat cgctgacgct ggaggatttg ctgcacaagc 2821 cagtggctcg agtgcaaata aatgccttgg tcttcaatga tttgctgcgc gaaacgccga 2881 tggcgcatcc ggatcaccag ccattgcggc aggcgcaaaa gatcatccag atgttcctga 2941 atcaattcaa tgtcgtcaat cagcggctgc ccagcgaatc gaatcgaaat ctgcgacgca 3001 tggtccgtaa ttcgttcatt gtggagctgg tcgatggcca tcgcaagttg cggcatctct 3061 tccttttcaa cgatgtgatc gcatgcgcca agtacaaggc actgggcagg gatcgcatcg 3121 actatgagct caaatggttc ataccactga aggagatttc gatcatcgag gaggcggatc 3181 cggcggccga actgaaggaa tctagtccag cgaacatatc gcaagtgaag cgcaatttgc 3241 gctccgttcg agatcaattg gccatggagg tggcgaacag tggaggcggc ggtgtgcgtt 3301 ccggcgacaa gtatcgccgc aagctggccg atctggagtc acagcttgtg ctggccacgc 3361 ccaatttggt gctccggctg gccaataagg cgaataacaa gaccatgacc ttcttcctca 3421 gctcggattt cgagcggacg cagtggatcg actcgatcac gtcgctcaag caaaagtgca 3481 acctgcccgg agccaatacg atcaattcgc tggaggtcac cgccttcatt gtggccatgc 3541 agaagggcat gaagactgaa atgggctcgt atctgatgcg caacaccaac gacgagagcc 3601 tgctggtggg agatctgcac atggccgtcc agggattggg cggcttggag caggcggccg 3661 acctgtacat ctgcatcgag gtggactctt acggtcacta tttccgcaag gccaccacca 3721 agatggtgtg tcgcagtcag acgccgttgt ggaacgagag ctttatgctg gaactggagg 3781 gcagccagaa tgtgcgcatt cttctctacg aggccaagga gcggccgctc ctgagagcca 3841 agcacatact caagttgagc ctcagttggc tgacagaaac cacgcagccg cgaacaatta 3901 agcttagtga gaccctggag ctcggctgca gcttccggtt tgtgcccggc gagctatgcc 3961 gcgccaccac taagccagga gccctctttg gtgccaaaat gagtcaagta ttaaaacgcg 4021 agaaacgcga cattccgttc atcatcagtg cctgcattcg tgaggtggag cggcggggaa 4081 tgctggaggt tggctgctat cgcgtcagcg gttccgcctc cgatttggcc aagctcaaga 4141 aggcatttga gtcggatgcc tatgaggcgg agcagctgct gcgcgaagtg gacatccatt 4201 cggtcacggg cattttgaag accttcctaa gagagctgcc cgaggcttta ttcacggatc 4261 agctatatcc acgattcttc gacacattca gcgcctttag caacaacaac gaatccacgc 4321 gaatcaacga gctgctcaaa gttttcgagg agctgccgca ggtcaacaag gcctccatca 4381 attcgattct agatcatctg attagagtcc acgaaaagga gacggacaac aagatgtcgc 4441 tgcacaatct ggccatggtt ttcgggccca ccctgctgag gccgggacaa acgcaggtga 4501 agcaaaagga tccgctggcc gcgagcaccg tcgatgtgat ggcccaggcc gggatcctct 4561 actgcttcct gcaggcgcgc atcaagaagg attaggactt tggaacagcc gtctgcacag 4621 atatacatat ggaatatata tatatataaa catatatata tatatgcaca taaattatat 4681 atttttttta catagcaata gcggtaatac gaacgaaatt cgatggatag cctacgcata 4741 caccacgccc ccacctgtca gccaccacac gccccctgca caaagtatac acacacaaaa 4801 aaaacagcta aacaccttaa aaccttccgg gaaacgcctg aaaaaacacc ttgaaaacgc 4861 ttatagagct tgaaaaatat cgaaagtttg ctatttcttg atatttaatt tgaaaacatc 4921 gatattatcg aattaatatt atcgaaaata tcgataattt tcaagttcta attgaaaaaa 4981 acacttaaat acacctgcgc tgccaattgt atataccaga aaccgaaact gcaactaaaa 5041 gctgaagata tggatggatc tggcgaggaa tacggacgga ggaggcccct tttcggggat 5101 gtgaacaaat ctgctcaatg gcgggctcac acacacacgc acaacgcaac acaacacaac 5161 acacacacat cagcaacaca cacctgggat gatcaagtgt ctaacactaa ttagctgctc 5221 ctccgcttac taaatattat tcccatgtat tacagatatt tccgtagatc tgtagactgt 5281 atgctgcttt acctttagat tgcgaccttt attagcttac tgcaactatt gcaaaaaaaa 5341 aaagagaaag aaagaaggga aagcagaaaa ttgcaaatat tttcaatatt acacgtatat 5401 atctagagac atatatacgc aacctatata taattaatta ctactactag tactataatt 5461 tactaaagtg aggtagcaag tttttccggc tgattgatca atgattgata tacgatgtac 5521 gatgtatgtg tttgcttaaa aaattctgtt tttttttttc gtcttgtttt atattaatta 5581 tttaggtttt tatataaaca gaagcgtaaa ataaaatata ttctatttag aaa