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LOCUS XM_017139321 5639 bp mRNA linear INV 09-DEC-2024 1A (RhoGAP1A), transcript variant X2, mRNA. ACCESSION XM_017139321 VERSION XM_017139321.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139321.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5639 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5639 /gene="RhoGAP1A" /note="Rho GTPase activating protein at 1A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108055801" CDS 357..4601 /gene="RhoGAP1A" /codon_start=1 /product="active breakpoint cluster region-related protein isoform X1" /protein_id="XP_016994810.2" /db_xref="GeneID:108055801" /translation="MSVFDDFQRLWMQRFPQSSLSDAWEQDVRASLERHKLRILELTK ELEQETLYVEYLERLLSDVEKYRASGGDPTALFEAASGSGGTNNGGTTNGAPPGGGTT NVDKEFKSSLNLRESSTSSGGKDKDRLSLNTDNKYTTHTNAAGSGSGGGTAAGAGAGS TSGPLHSAPPTGKRIAELNFEREERDKDSGNEKDTNGALQQCITELAASIKAQPDNGA SSTGGGGAGGAGGSTDGGDKEKQPLRKSTSQYVTVIQVKEAKEKEGDDGGASDPQQSQ QPTPPSTFARYAEASAPPLSPSLTSYAAHVEAKKKMPPRPPPKNIRRVEPPTIPSQQQ QQLSSSPKRETPFVGSSMPLPSSSGGSLSSDSPGNSLERNIKPSDILRQKSSENLDSK YAANRKTTPELGKFVNVNNPELMEELGRKMVGKTDSLEQAKRNDSSPSGGGSLGRTAS TPGRSLTPGRTGVGASPTGSLNKTAKLAAADSSSTSSLEKKSRNCLQASDAEGGTGTN QRSVGSKESLASQGISEVIKSYESVSSLSSESAKAAATAAASQQSAADNEPYYDSVPL DNGDGEYVFIKPGRTGSSSSRDDLSTPGSSTLPLANPADPESPGRTSNYVNIDYFLQQ SNETRSSSLDSDGEYEGPPILRTISHDEQTTSQTTPGALRKNLVSAILVSGNARGAKI RSILSSIIQSETIYVECLNKMMQYKKAIHATLNTSQPVIKEEEENTIFFKIDELHDLH TAFLSDLKTIVSHEGGDVLIGEPFRRLADMFDLYSAFLHNYKNAIETVKKCSANNPQF KKIVSTIVVNLQTEQSLTLEDLLHKPVARVQINALVFNDLLRETPMAHPDHQPLRQAQ KIIQMFLNQFNVVNQRLPSESNRNLRRMVRNSFIVELVDGHRKLRHLFLFNDVIACAK YKALGRDRIDYELKWFIPLKEISIIEEADPAAELKESSPANISQVKRNLRSVRDQLAM EVANSGGGGVRSGDKYRRKLADLESQLVLATPNLVLRLANKANNKTMTFFLSSDFERT QWIDSITSLKQKCNLPGANTINSLEVTAFIVAMQKGMKTEMGSYLMRNTNDESLLVGD LHMAVQGLGGLEQAADLYICIEVDSYGHYFRKATTKMVCRSQTPLWNESFMLELEGSQ NVRILLYEAKERPLLRAKHILKLSLSWLTETTQPRTIKLSETLELGCSFRFVPGELCR ATTKPGALFGAKMSQVLKREKRDIPFIISACIREVERRGMLEVGCYRVSGSASDLAKL KKAFESDAYEAEQLLREVDIHSVTGILKTFLRELPEALFTDQLYPRFFDTFSAFSNNN ESTRINELLKVFEELPQVNKASINSILDHLIRVHEKETDNKMSLHNLAMVFGPTLLRP GQTQVKQKDPLAASTVDVMAQAGILYCFLQARIKKD" misc_feature 2409..2957 /gene="RhoGAP1A" /note="Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Region: RhoGEF; smart00325" /db_xref="CDD:214619" misc_feature order(2418..2420,2430..2432,2721..2723,2808..2813, 2820..2825,2829..2834,2841..2846,2853..2858,2865..2867, 2943..2945,2955..2957) /gene="RhoGAP1A" /note="GTPase interaction site [polypeptide binding]; other site" /db_xref="CDD:238091" misc_feature 2937..3497 /gene="RhoGAP1A" /note="Breakpoint Cluster Region-related pleckstrin homology (PH) domain; Region: PH_BCR_arthropod; cd13368" /db_xref="CDD:270174" misc_feature 3621..>3818 /gene="RhoGAP1A" /note="C2 domain; Region: C2; cl14603" /db_xref="CDD:472691" misc_feature 3993..4580 /gene="RhoGAP1A" /note="GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to...; Region: RhoGAP; cl02570" /db_xref="CDD:470621" misc_feature order(4107..4109,4224..4226,4236..4238,4452..4454, 4461..4466,4554..4556) /gene="RhoGAP1A" /note="GTPase interaction site; other site" /db_xref="CDD:238090" misc_feature 4107..4109 /gene="RhoGAP1A" /note="catalytic residue [active]" /db_xref="CDD:238090" polyA_site 5639 /gene="RhoGAP1A" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gccgaaaaac caaagccgag tttttaccca caccaatgca gcgcgttagt gctgcacata 61 tgcaaatgtg tttgtgtgtt tgcccaagag tgaaatatat atatgtggat tttttctaag 121 cgaaaactaa ttggaatggc aaacggcggt gaaggcgaca acgcacaact ggtgctcgtt 181 gttacataaa aggcaacctc gccctctctt cgtcatcatc tcgaggaatt atcatcatta 241 atatatagca tcatcggaaa ccgcatctct ggagtgagga ataagtgcag gcaaaagcag 301 aagaatcgaa ggaggaggag gaaaagaagg agaaggagga gcaccacctg gtcaccatga 361 gcgtcttcga cgacttccag cgcttgtgga tgcagcgctt cccgcagagc tcgctatccg 421 atgcctggga acaggacgtg cgggcgagtc tcgagcggca caagctgcgc atccttgagc 481 tgaccaagga gctcgaacag gagaccctct atgtggagta cctggagcgc ctgctgtccg 541 atgtggagaa gtatcgcgcc tctggcgggg atcccacggc cctcttcgag gcggccagcg 601 gaagtggtgg caccaacaac ggtggcacca ccaatggagc accgccaggc ggaggcacca 661 ccaatgtgga caaagagttt aaatccagtt taaatctgcg cgagtcctcg acgtcgtccg 721 gcggcaagga caaggatcgc ctgtcgctca acacggacaa caagtacaca acacacacga 781 atgccgctgg cagtgggagt ggcggcggta cggcagcggg agcgggggcg ggatccacca 841 gcggtccgct tcactctgcc ccgccgacgg gcaaacggat agcggagctg aatttcgagc 901 gagaggagcg cgacaaggac agtggcaacg agaaggacac caacggagct ctgcagcagt 961 gcatcacaga gttggcggcc tcgataaaag cccagccgga taatggggca tcttcaacag 1021 gaggaggagg agctggagga gcaggaggat caaccgatgg cggagataag gagaaacaac 1081 cgctgcgcaa atccacctcg caatacgtca ccgtcatcca ggtgaaggag gccaaagaga 1141 aagagggcga cgatggagga gccagtgacc cacagcagtc gcagcagccc acgccgccct 1201 caacattcgc tcgctatgcg gaggccagtg ctcctccgct gtcgccgtcg ctcacctcgt 1261 acgcagccca cgtggaggcc aaaaagaaaa tgccacccag acctccgcca aagaacattc 1321 gccgcgtgga gccgcccacc attcccagcc agcagcagca gcagctgtcg tcgtcgccaa 1381 aaagagagac tccctttgtg ggcagctcga tgccgctgcc cagcagctcc ggcggcagcc 1441 tctcctccga cagtccgggc aattcgctgg agcgcaacat caagccctcg gatattctgc 1501 gccagaagtc gtccgagaat ctggattcca aatatgcggc gaatcgcaaa acaacaccgg 1561 agctgggcaa atttgtgaat gtcaataatc ctgagctaat ggaggagctg ggccgcaaga 1621 tggtgggcaa gacggacagt ctggagcagg ccaagcggaa tgactcctcg ccctcgggcg 1681 gcggcagtct gggacgcact gcctccacac cggggcgatc attgacaccg ggacgaacgg 1741 gcgtcggggc ctcgcccacg ggtagcctaa acaagaccgc caaactggcg gcagcggaca 1801 gcagttcgac gagcagtctg gagaagaagt cgcgcaactg cctgcaggcc agcgatgcag 1861 agggtggaac gggaacgaat cagcggagtg tgggctccaa ggagtcgctg gcatcgcaag 1921 gcatatcaga ggtgatcaag agctacgaga gtgtctcctc gctgagttcg gaaagcgcca 1981 aggcggcggc gacggcggca gcatcccagc aatcggcggc ggacaacgag ccgtactacg 2041 atagcgtgcc gctggacaac ggcgacgggg agtacgtgtt catcaagccc ggtcgcaccg 2101 gttcctcctc cagtcgcgat gatttgtcaa cgcccggcag cagcactctg ccgctggcca 2161 atccggcgga tcccgaatct ccaggcagga cctccaacta cgtcaacatc gactacttcc 2221 tacagcaaag caatgagacg cggtccagtt cgctggacag cgacggggag tacgagggtc 2281 cgcccatatt gcgcaccatt tcccacgacg agcagaccac gtcacaaact acgccgggag 2341 cacttcgcaa gaacttagtt tcagcgatac ttgtttctgg aaatgcccgc ggtgccaaaa 2401 tacgatctat actcagctca atcattcaga gcgagacgat ctacgtggag tgcctcaata 2461 aaatgatgca gtacaagaag gcgatccacg ctaccctgaa cacatcgcag cctgtgatca 2521 aggaggagga ggagaacacg attttcttca agatcgacga gctccacgat ctgcacaccg 2581 ccttcctgtc cgacctgaag acgatcgttt cccacgaggg cggcgatgtg ctgatcggtg 2641 agcccttccg tcgactggcc gatatgttcg atctgtatag cgccttcttg cacaactaca 2701 agaacgccat cgagacggtg aagaagtgca gtgcgaacaa tccgcagttc aagaagatcg 2761 tctccaccat agtggtcaat ctgcagacgg agcaatcgct gacgctggag gatttgctgc 2821 acaagccagt ggctcgagtg caaataaatg ccttggtctt caatgatttg ctgcgcgaaa 2881 cgccgatggc gcatccggat caccagccat tgcggcaggc gcaaaagatc atccagatgt 2941 tcctgaatca attcaatgtc gtcaatcagc ggctgcccag cgaatcgaat cgaaatctgc 3001 gacgcatggt ccgtaattcg ttcattgtgg agctggtcga tggccatcgc aagttgcggc 3061 atctcttcct tttcaacgat gtgatcgcat gcgccaagta caaggcactg ggcagggatc 3121 gcatcgacta tgagctcaaa tggttcatac cactgaagga gatttcgatc atcgaggagg 3181 cggatccggc ggccgaactg aaggaatcta gtccagcgaa catatcgcaa gtgaagcgca 3241 atttgcgctc cgttcgagat caattggcca tggaggtggc gaacagtgga ggcggcggtg 3301 tgcgttccgg cgacaagtat cgccgcaagc tggccgatct ggagtcacag cttgtgctgg 3361 ccacgcccaa tttggtgctc cggctggcca ataaggcgaa taacaagacc atgaccttct 3421 tcctcagctc ggatttcgag cggacgcagt ggatcgactc gatcacgtcg ctcaagcaaa 3481 agtgcaacct gcccggagcc aatacgatca attcgctgga ggtcaccgcc ttcattgtgg 3541 ccatgcagaa gggcatgaag actgaaatgg gctcgtatct gatgcgcaac accaacgacg 3601 agagcctgct ggtgggagat ctgcacatgg ccgtccaggg attgggcggc ttggagcagg 3661 cggccgacct gtacatctgc atcgaggtgg actcttacgg tcactatttc cgcaaggcca 3721 ccaccaagat ggtgtgtcgc agtcagacgc cgttgtggaa cgagagcttt atgctggaac 3781 tggagggcag ccagaatgtg cgcattcttc tctacgaggc caaggagcgg ccgctcctga 3841 gagccaagca catactcaag ttgagcctca gttggctgac agaaaccacg cagccgcgaa 3901 caattaagct tagtgagacc ctggagctcg gctgcagctt ccggtttgtg cccggcgagc 3961 tatgccgcgc caccactaag ccaggagccc tctttggtgc caaaatgagt caagtattaa 4021 aacgcgagaa acgcgacatt ccgttcatca tcagtgcctg cattcgtgag gtggagcggc 4081 ggggaatgct ggaggttggc tgctatcgcg tcagcggttc cgcctccgat ttggccaagc 4141 tcaagaaggc atttgagtcg gatgcctatg aggcggagca gctgctgcgc gaagtggaca 4201 tccattcggt cacgggcatt ttgaagacct tcctaagaga gctgcccgag gctttattca 4261 cggatcagct atatccacga ttcttcgaca cattcagcgc ctttagcaac aacaacgaat 4321 ccacgcgaat caacgagctg ctcaaagttt tcgaggagct gccgcaggtc aacaaggcct 4381 ccatcaattc gattctagat catctgatta gagtccacga aaaggagacg gacaacaaga 4441 tgtcgctgca caatctggcc atggttttcg ggcccaccct gctgaggccg ggacaaacgc 4501 aggtgaagca aaaggatccg ctggccgcga gcaccgtcga tgtgatggcc caggccggga 4561 tcctctactg cttcctgcag gcgcgcatca agaaggatta ggactttgga acagccgtct 4621 gcacagatat acatatggaa tatatatata tataaacata tatatatata tgcacataaa 4681 ttatatattt tttttacata gcaatagcgg taatacgaac gaaattcgat ggatagccta 4741 cgcatacacc acgcccccac ctgtcagcca ccacacgccc cctgcacaaa gtatacacac 4801 acaaaaaaaa cagctaaaca ccttaaaacc ttccgggaaa cgcctgaaaa aacaccttga 4861 aaacgcttat agagcttgaa aaatatcgaa agtttgctat ttcttgatat ttaatttgaa 4921 aacatcgata ttatcgaatt aatattatcg aaaatatcga taattttcaa gttctaattg 4981 aaaaaaacac ttaaatacac ctgcgctgcc aattgtatat accagaaacc gaaactgcaa 5041 ctaaaagctg aagatatgga tggatctggc gaggaatacg gacggaggag gccccttttc 5101 ggggatgtga acaaatctgc tcaatggcgg gctcacacac acacgcacaa cgcaacacaa 5161 cacaacacac acacatcagc aacacacacc tgggatgatc aagtgtctaa cactaattag 5221 ctgctcctcc gcttactaaa tattattccc atgtattaca gatatttccg tagatctgta 5281 gactgtatgc tgctttacct ttagattgcg acctttatta gcttactgca actattgcaa 5341 aaaaaaaaag agaaagaaag aagggaaagc agaaaattgc aaatattttc aatattacac 5401 gtatatatct agagacatat atacgcaacc tatatataat taattactac tactagtact 5461 ataatttact aaagtgaggt agcaagtttt tccggctgat tgatcaatga ttgatatacg 5521 atgtacgatg tatgtgtttg cttaaaaaat tctgtttttt tttttcgtct tgttttatat 5581 taattattta ggtttttata taaacagaag cgtaaaataa aatatattct atttagaaa