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LOCUS XM_017139249 2188 bp mRNA linear INV 09-DEC-2024 (Traf6), mRNA. ACCESSION XM_017139249 VERSION XM_017139249.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139249.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2188 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2188 /gene="Traf6" /note="TNF-receptor-associated factor 6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108055756" CDS 112..1545 /gene="Traf6" /codon_start=1 /product="TNF receptor-associated factor 6" /protein_id="XP_016994738.2" /db_xref="GeneID:108055756" /translation="MQRVQADQKPARMPQHPQGHHHSHSEEREHNSNETTTTSNARIA ASSSATPTAAAGAAGGGGGAPSGAPTPPKSLALNQNHQHHHHYGSDTSGDQEEELLDS RYECAICIDWLNEPVLTSCGHRFCRSCLAAWMQKNNQCCPMDNKRLSAEHDIFPDNYT RREIEQLKRDCPNSSLGCSVVASPIELHRHLPSCPFRRQQEPQEEKCPFAKIKCDFVG RPETNQLEEHLKADMPHHMQLMLQAFQQTAIATWQPHKPSSSSGGGGSVENGHGLPPP PQYANGVDEQIVQTMYQRIVVLEQRTREQETRLENLQKQLRLARQQAPVDPRYSNGTI VWRIEQLGALVARLRANANNQVYSHECYTSPHGYKFCARLNIQPRKPHVLSLHVHLMQ SENDYHLDWPFKGRIKLCMVHPADVTLSQHDTIMTKPEILAFHQPREAISTRGFGFLE YANISNIIQLGFCADDRLLIKIEINIV" misc_feature 418..546 /gene="Traf6" /note="Modified RING finger, HC subclass (C3HC3D-type), found in ligand of Numb protein LNX1, LNX2, and similar proteins; Region: mRING-HC-C3HC3D_LNX1-like; cd16637" /db_xref="CDD:438299" misc_feature 622..>807 /gene="Traf6" /note="Seven in absentia protein family; Region: Sina; pfam03145" /db_xref="CDD:460824" misc_feature 1105..1536 /gene="Traf6" /note="Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter...; Region: MATH_TRAF6; cd03776" /db_xref="CDD:239745" misc_feature order(1114..1116,1120..1122,1204..1209,1291..1293, 1300..1302,1351..1353) /gene="Traf6" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:239745" misc_feature order(1228..1230,1270..1272,1402..1410,1438..1452) /gene="Traf6" /note="TNFR binding site [active]" /db_xref="CDD:239745" ORIGIN 1 ccttcgacgc atacacagct gttccgagga gtcatgagcg aaaattacct cttaaaattg 61 aattagttga tttaaagcga cagccagccg gcggccagcg aggcagcaac gatgcagcga 121 gtccaggcgg accagaagcc agccaggatg ccccagcatc cgcaggggca ccaccattcc 181 cactcggagg agcgggagca caacagcaat gagacgacga ccacatcaaa tgctaggatt 241 gcggccagca gcagtgccac gcccacagcg gcggcggggg cagcgggcgg aggaggagga 301 gcacccagtg gagcacccac tccgcccaag agtctggccc tcaaccagaa ccaccagcat 361 catcatcact acggatcgga tacatccgga gatcaggagg aggagctgct ggactctcgc 421 tacgagtgcg ccatctgcat cgactggctg aacgagccgg tgctgacctc ctgcggccac 481 cgcttctgcc gcagctgcct ggccgcctgg atgcagaaga acaaccagtg ctgtccgatg 541 gacaacaagc gtctgtccgc cgagcacgac atcttcccgg acaactatac gcgccgggag 601 atcgagcagc tgaagcgcga ctgccccaac tcctcgctgg gctgctcggt ggtggcctcg 661 cccatcgagc tgcaccgcca cctgcccagc tgtcccttcc gccggcagca ggagccgcag 721 gaggagaagt gcccgtttgc caagatcaag tgcgattttg tcggccgacc cgagacgaat 781 cagctggagg agcacctcaa ggcggacatg ccgcaccaca tgcagctgat gctgcaggcc 841 ttccagcaga cggccattgc cacctggcag ccgcacaagc caagtagcag cagtggagga 901 ggaggatcag tggagaacgg ccatgggctg ccgccacctc ctcaatacgc caacggagtg 961 gatgagcaga tcgtgcagac catgtaccag cggattgtgg tgctggagca gcggacgcgc 1021 gagcaggaga cgcgactgga gaatctgcag aagcagttgc ggttggcacg ccaacaggcg 1081 cccgtggatc cgcgctacag caacggaacg attgtgtggc gcatcgagca gctgggcgct 1141 ttggtggccc gcctgcgggc gaatgccaac aatcaggttt actcgcacga gtgctacacc 1201 tcgccgcatg gctacaagtt ctgtgcgcgg ctaaatattc agccgcggaa gccgcatgtg 1261 ctcagcctgc atgtgcatct gatgcagtcg gagaacgact atcatctgga ctggcccttc 1321 aagggacgca tcaagctgtg catggtccat ccggcggatg tgacgctctc gcagcacgat 1381 acgattatga ccaagcccga gatactggcc ttccatcagc cgcgcgaggc gatcagcacg 1441 cggggattcg gcttcctcga gtacgccaac atatcgaaca tcattcagct gggcttctgc 1501 gccgatgacc ggctgctcat caagatcgag atcaatattg tgtgaaatgt tgcaggaaat 1561 ggagtcttcc gattaggttg cgtttgtaac aaggtggatc gaattgtagg gcgagtagga 1621 aagccaggaa ttagtcggag taaattagca tatttatctt tgtcatattt taatttcact 1681 gaaagataat ctctgtaaag agcagtagag aatgcctgac ctatcagcta aataacctag 1741 aattactcga tccactttag tgaacgtaaa tatgcaataa ccaatagccg acgcgtatat 1801 attttatata gacctatata tagtatacta tagtcaccgt ctagcaggca tcacagaaag 1861 caattccgtt gatattcctt tccattaact aatcgatatt atctatgcta gaactatttc 1921 gtattctcgt ttataactcg ttttagcaat cgaagggcat tggaaaaact agatctataa 1981 ttagaaattt catttgaacc tggatttccc cgtgatccct taattaatct ttagtttcca 2041 aaacattctc gtcaatctga ttgaatttaa ctattaaccg agtacgtcca tttttttaaa 2101 ctagtttact tgataatcca tttagaatta tgctaggttt taatgcttta gtttatcgtt 2161 tcgaaaataa actaaaaatg agcgctta