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LOCUS XM_017137879 1799 bp mRNA linear INV 09-DEC-2024 subunit (Pdha), transcript variant X2, mRNA. ACCESSION XM_017137879 VERSION XM_017137879.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137879.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1799 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1799 /gene="Pdha" /note="Pyruvate dehydrogenase E1 alpha subunit; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108054803" CDS 229..1428 /gene="Pdha" /codon_start=1 /product="pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X2" /protein_id="XP_016993368.1" /db_xref="GeneID:108054803" /translation="MLRTLSRVSELPIIVKQLQKNAAQAGVSKTNNYATEATIQVNRP FKLHRLDEGPATEVKLTKDQALKYYTQMQTIRRLETAAGNLYKEKIIRGFCHLYSGQE ACAVGMKAAMRDVDNIISAYRVHGWTYLMGVSPSGVLAELTGVQGGCARGKGGSMHMY APNFYGGNGIVGAQVPLGAGVGLACKYKGNGGMCLALYGDGAANQGQVFEAYNMAYLW KLPVIFVCENNNYGMGTSSERASCNTDYYTRGDALPGIWVDGMDVLAVRSATEFAINY VNTHGPLVLETNTYRYSGHSMSDPGTSYRTREEIQEVRQKRDPITSFKELCIELGLIT TDEVKAIDLKVRKEVDEATAFAKSDAELGVSHLWTDVYSNNLEPKLRGTIAYDIDHIQ ERKGVNH" misc_feature 328..1374 /gene="Pdha" /note="Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and...; Region: TPP_enzymes; cl01629" /db_xref="CDD:470272" misc_feature order(502..504,658..660,733..738,829..831,835..846, 853..855,865..867,877..879,922..933,973..975,1123..1125, 1135..1137) /gene="Pdha" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:238958" misc_feature order(592..597,733..735,739..741,823..834,913..915, 919..921,1111..1113) /gene="Pdha" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:238958" misc_feature order(718..720,724..726,730..732,745..747,754..759, 766..771,775..780,787..789,844..849,865..870,877..879) /gene="Pdha" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:238958" misc_feature order(1096..1116,1120..1152,1177..1185) /gene="Pdha" /note="phosphorylation loop region [posttranslational modification]" /db_xref="CDD:238958" polyA_site 1799 /gene="Pdha" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcggtatttt tcctcgaccg ctctacggtt tctatagttg tgcaatatag tagttgataa 61 actaatcttg ctaccttttt tttgcgattg tttaacttac aacgacgcgc ggcggtgcga 121 ctgaaacacc cgatatatag cgtgcgatta cagatccgga tagtccgcat ataggagccc 181 ccattcagaa ccgattttag tcagtcgaac gagaaaaaca cagcgaaaat gttgcgtact 241 ctgtcgcgcg ttagcgaatt gcccattatt gttaagcaac tgcaaaaaaa tgcggcccaa 301 gcaggtgtct caaagaccaa taactatgcc acggaggcca ccattcaagt gaatcggccc 361 ttcaagctgc accgcctgga cgagggaccc gccacggaag tcaaactgac caaggaccag 421 gccctcaagt actacacaca gatgcagacg atccgtcgcc tggagacggc cgccggcaat 481 ctgtacaagg agaagatcat ccgtggcttc tgtcacctgt attccggcca ggaggcctgt 541 gccgtcggca tgaaggcggc catgcgggat gtggataaca tcatctcggc ataccgcgtg 601 cacggatgga cctacctgat gggcgtctcg ccgagcggcg ttctggccga gctgacgggc 661 gttcagggcg gctgtgcccg cggcaagggt ggctccatgc acatgtacgc gccgaatttc 721 tacggcggca acggcatcgt gggcgcccag gttcctttgg gcgctggcgt tggcctggcc 781 tgcaagtaca agggcaacgg cggcatgtgc ctggccctct acggcgacgg tgccgccaac 841 cagggacagg tgttcgaggc ctacaacatg gcctacctgt ggaagctgcc tgtgattttc 901 gtctgcgaga acaacaacta cggaatgggc accagctcgg agcgtgcgtc gtgcaacacg 961 gactactata cccgcggcga cgccttgccc ggcatctggg tggacggcat ggacgtgctg 1021 gccgtgcgca gtgctaccga gttcgccatc aactatgtga acacccacgg acctttggtg 1081 ctcgagacga acacataccg ctactccggc cactcgatgt cggatccggg cacatcgtac 1141 cgcacgcgcg aggagatcca agaggtgcgc cagaagcgcg accccatcac ctccttcaag 1201 gagctgtgca tcgagctggg cctgatcacc accgatgaag tcaaggccat cgatctgaag 1261 gtgcgcaagg aggtcgacga ggccaccgcc ttcgccaagt ccgatgccga actgggcgtc 1321 agccacctct ggacggacgt ctactccaac aacctggagc ccaagctgcg cggcaccatc 1381 gcctacgaca tcgatcacat ccaggagcgc aagggcgtca atcactaagt cagtcgggct 1441 aacgaatctg attcgggaac tcacaagaca cacaaatcga agaaaacaaa taggacgaca 1501 ccaaactaac agcaatcaca gacagacacg aagacacaac tcagacactt agacacaagc 1561 gaaatctcta gctcttaagc cgaatgttga atgatgagaa ccccgtagac cggaagaccc 1621 gaagacccga aggacccaca aaaagaagct tagctaatcg gagcactcca accacatcgt 1681 agcgcaccac attactctgg ggaactgcat tggatattat tatattgcga acgtgttcaa 1741 tatggataaa gcgaagtgta aattgttgaa aatatacata cctagaaaaa ttaaacaaa