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LOCUS XM_017137877 1916 bp mRNA linear INV 09-DEC-2024 subunit (Pdha), transcript variant X1, mRNA. ACCESSION XM_017137877 VERSION XM_017137877.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137877.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1916 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1916 /gene="Pdha" /note="Pyruvate dehydrogenase E1 alpha subunit; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108054803" CDS 232..1545 /gene="Pdha" /codon_start=1 /product="pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1" /protein_id="XP_016993366.2" /db_xref="GeneID:108054803" /translation="MLRTLSRVSELPIIVKQLQKRCHNNNNNSGWRIYSNNNNNNEII GNGRYSSSFFGLFQNAAQAGVSKTNNYATEATIQVNRPFKLHRLDEGPATEVKLTKDQ ALKYYTQMQTIRRLETAAGNLYKEKIIRGFCHLYSGQEACAVGMKAAMRDVDNIISAY RVHGWTYLMGVSPSGVLAELTGVQGGCARGKGGSMHMYAPNFYGGNGIVGAQVPLGAG VGLACKYKGNGGMCLALYGDGAANQGQVFEAYNMAYLWKLPVIFVCENNNYGMGTSSE RASCNTDYYTRGDALPGIWVDGMDVLAVRSATEFAINYVNTHGPLVLETNTYRYSGHS MSDPGTSYRTREEIQEVRQKRDPITSFKELCIELGLITTDEVKAIDLKVRKEVDEATA FAKSDAELGVSHLWTDVYSNNLEPKLRGTIAYDIDHIQERKGVNH" misc_feature 445..1491 /gene="Pdha" /note="Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and...; Region: TPP_enzymes; cl01629" /db_xref="CDD:470272" misc_feature order(619..621,775..777,850..855,946..948,952..963, 970..972,982..984,994..996,1039..1050,1090..1092, 1240..1242,1252..1254) /gene="Pdha" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:238958" misc_feature order(709..714,850..852,856..858,940..951,1030..1032, 1036..1038,1228..1230) /gene="Pdha" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:238958" misc_feature order(835..837,841..843,847..849,862..864,871..876, 883..888,892..897,904..906,961..966,982..987,994..996) /gene="Pdha" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:238958" misc_feature order(1213..1233,1237..1269,1294..1302) /gene="Pdha" /note="phosphorylation loop region [posttranslational modification]" /db_xref="CDD:238958" polyA_site 1916 /gene="Pdha" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaatcggtat ttttcctcga ccgctctacg gtttctatag ttgtgcaata tagtagttga 61 taaactaatc ttgctacctt ttttttgcga ttgtttaact tacaacgacg cgcggcggtg 121 cgactgaaac acccgatata tagcgtgcga ttacagatcc ggatagtccg catataggag 181 cccccattca gaaccgattt tagtcagtcg aacgagaaaa acacagcgaa aatgttgcgt 241 actctgtcgc gcgttagcga attgcccatt attgttaagc aactgcaaaa acgttgccat 301 aacaacaaca acaacagcgg atggcggata tatagcaaca acaacaacaa caacgaaatc 361 atcgggaatg ggagatattc atcgtcgttt ttcggtttat tccagaatgc ggcccaagca 421 ggtgtctcaa agaccaataa ctatgccacg gaggccacca ttcaagtgaa tcggcccttc 481 aagctgcacc gcctggacga gggacccgcc acggaagtca aactgaccaa ggaccaggcc 541 ctcaagtact acacacagat gcagacgatc cgtcgcctgg agacggccgc cggcaatctg 601 tacaaggaga agatcatccg tggcttctgt cacctgtatt ccggccagga ggcctgtgcc 661 gtcggcatga aggcggccat gcgggatgtg gataacatca tctcggcata ccgcgtgcac 721 ggatggacct acctgatggg cgtctcgccg agcggcgttc tggccgagct gacgggcgtt 781 cagggcggct gtgcccgcgg caagggtggc tccatgcaca tgtacgcgcc gaatttctac 841 ggcggcaacg gcatcgtggg cgcccaggtt cctttgggcg ctggcgttgg cctggcctgc 901 aagtacaagg gcaacggcgg catgtgcctg gccctctacg gcgacggtgc cgccaaccag 961 ggacaggtgt tcgaggccta caacatggcc tacctgtgga agctgcctgt gattttcgtc 1021 tgcgagaaca acaactacgg aatgggcacc agctcggagc gtgcgtcgtg caacacggac 1081 tactataccc gcggcgacgc cttgcccggc atctgggtgg acggcatgga cgtgctggcc 1141 gtgcgcagtg ctaccgagtt cgccatcaac tatgtgaaca cccacggacc tttggtgctc 1201 gagacgaaca cataccgcta ctccggccac tcgatgtcgg atccgggcac atcgtaccgc 1261 acgcgcgagg agatccaaga ggtgcgccag aagcgcgacc ccatcacctc cttcaaggag 1321 ctgtgcatcg agctgggcct gatcaccacc gatgaagtca aggccatcga tctgaaggtg 1381 cgcaaggagg tcgacgaggc caccgccttc gccaagtccg atgccgaact gggcgtcagc 1441 cacctctgga cggacgtcta ctccaacaac ctggagccca agctgcgcgg caccatcgcc 1501 tacgacatcg atcacatcca ggagcgcaag ggcgtcaatc actaagtcag tcgggctaac 1561 gaatctgatt cgggaactca caagacacac aaatcgaaga aaacaaatag gacgacacca 1621 aactaacagc aatcacagac agacacgaag acacaactca gacacttaga cacaagcgaa 1681 atctctagct cttaagccga atgttgaatg atgagaaccc cgtagaccgg aagacccgaa 1741 gacccgaagg acccacaaaa agaagcttag ctaatcggag cactccaacc acatcgtagc 1801 gcaccacatt actctgggga actgcattgg atattattat attgcgaacg tgttcaatat 1861 ggataaagcg aagtgtaaat tgttgaaaat atacatacct agaaaaatta aacaaa