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LOCUS XM_017137852 2570 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_017137852 VERSION XM_017137852.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137852.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2570 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2570 /gene="kdn" /note="citrate synthase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108054783" CDS 201..1595 /gene="kdn" /codon_start=1 /product="probable citrate synthase, mitochondrial isoform X2" /protein_id="XP_016993341.2" /db_xref="GeneID:108054783" /translation="MSLYRISARKLTEAQKLPNVGAYVRMISADGKSLRDVLTAKVPQ EQERVKNFRKQHGATKMGETTIDMMYGGMRGIKALVTETSVLDADEGIRFRGLSIPEC QKVLPAADGGTEPLPEGLFWLLLTGEVPTKSQVQQLSREWAERAALPQHVVTMLNNMP TTLHPMSQFAAAVTALNHDSKFAKAYSDGVHKSKYWEYVYEDSMDLIAKLPVVAATIY CNTYRGGKGSRSIDSSLDWSANFVKMLGYDNAPFTELMRLYLTIHSDHEGGNVSAHTV HLVGSALSDPYLSFAAGLNGLAGPLHGLANQEVLVWLRKLQKEAGNNPSEEQLKEYIW KTLKSGQVVPGYGHAVLRKTDPRYTCQREFALKHLPDDETFQLVSKIYKVVPPILTET GKVKNPWPNVDAHSGVLLQYYGMKEMNYYTVLFGVSRALGVLASLVWDRALGLPIERP KSFSTDLLVKMVQK" misc_feature 300..1583 /gene="kdn" /note="Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or...; Region: ScCit1-2_like; cd06105" /db_xref="CDD:99858" misc_feature order(414..419,426..446,699..701,711..713,720..722, 996..998,1011..1013,1020..1025,1032..1037,1044..1052, 1062..1064,1083..1088,1095..1103,1245..1247,1536..1562) /gene="kdn" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99858" misc_feature order(420..422,996..998,1008..1010,1098..1109,1113..1115, 1122..1124,1224..1247,1254..1256,1269..1271,1392..1394, 1401..1403,1407..1409,1473..1475,1485..1487,1536..1538, 1545..1547) /gene="kdn" /note="active site" /db_xref="CDD:99858" misc_feature order(420..422,1098..1106,1113..1115,1122..1124, 1224..1247,1254..1256,1392..1394,1401..1403,1407..1409, 1536..1538) /gene="kdn" /note="coenzyme A binding site [chemical binding]; other site" /db_xref="CDD:99858" misc_feature order(420..422,996..998,1008..1010,1101..1106,1224..1229, 1233..1247,1269..1271,1401..1403,1485..1487) /gene="kdn" /note="citrylCoA binding site [chemical binding]; other site" /db_xref="CDD:99858" misc_feature order(996..998,1008..1010,1104..1109,1242..1247, 1269..1271,1407..1409,1473..1475,1485..1487,1545..1547) /gene="kdn" /note="oxalacetate/citrate binding site [chemical binding]; other site" /db_xref="CDD:99858" misc_feature order(1104..1106,1242..1244,1407..1409) /gene="kdn" /note="catalytic triad [active]" /db_xref="CDD:99858" polyA_site 2570 /gene="kdn" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cttggcgggc aacattcagt tgccgcgcag ctgctagacg agaaacccac gaaaagaaca 61 cttcacttcc aggaaaaagg aggaggcaat ttttttctgt gtgtgtctgt gttttttctc 121 agtgcgagag agggattttc ttctagccaa ggcgaaagtg tttttcttct actcgcagta 181 ccgtacgtaa tcgcattgcc atgtcgctct accgcatttc cgcacgcaaa ttgaccgagg 241 cacagaaact gccaaatgtg ggagcctacg ttcgcatgat ctccgccgat ggcaagagcc 301 tgcgcgacgt gctgaccgcc aaggtgcccc aggagcagga gcgcgtgaag aacttccgca 361 agcagcatgg cgccaccaag atgggcgaga cgaccatcga catgatgtac ggcggcatgc 421 gcggcatcaa ggccctggtc acggagacct cggtgctgga cgctgacgag ggcatccgct 481 tccgcggcct ctccattccc gagtgccaga aggttctgcc ggccgccgat ggcggcactg 541 agcccctgcc cgagggtctc ttctggctgc tgctcaccgg cgaggtgccc accaagtcgc 601 aggtccagca gttgtcccgc gaatgggccg agcgtgccgc tctgccccag cacgtggtca 661 ccatgctgaa caacatgccc accaccctgc atccgatgtc gcagttcgcc gccgccgtca 721 ccgctctcaa ccacgacagc aagttcgcca aggcctactc ggatggcgtg cacaagagca 781 agtactggga gtacgtctac gaggacagca tggatctgat cgccaagctg cccgtcgtgg 841 cggccaccat ctactgcaac acctatcgcg gcggcaaggg ctcccgctcg atcgactcga 901 gcctggattg gtcggccaac tttgtgaaga tgctcggcta cgacaatgcc cccttcaccg 961 agctgatgcg tctctatctg accatccaca gtgaccacga gggcggcaat gtgtcggccc 1021 acaccgttca tctggtcggc tcggccctca gcgatcccta cctgtccttc gccgccggcc 1081 tgaacggtct cgctggtccc ctgcacggcc tggccaacca ggaggtgctc gtgtggctgc 1141 gcaagctgca gaaggaggcc ggcaacaacc cctcggagga gcagctcaag gagtacatct 1201 ggaagaccct caagtcggga caggtggttc ccggctacgg acatgccgtg ctccgcaaga 1261 ccgatccccg ctacacctgc cagcgcgagt tcgccctgaa gcacctgccc gacgacgaga 1321 ccttccagct ggtgtcgaag atctacaagg tggtgccccc aatcctcacc gagaccggca 1381 aggtgaagaa cccctggccc aatgtggacg cccattccgg tgtgctgctg cagtactacg 1441 gcatgaagga gatgaactac tacacggtgc tgttcggcgt gtcccgcgcc ctcggcgtgc 1501 tggcctccct cgtctgggat cgcgccctcg gcctgcccat cgagcgcccc aagtccttct 1561 ccaccgatct gctggtcaag atggtccaga agtaagaggc atctggagga gcaggaggag 1621 cgggtagagc tggagtgttc aaccttttat agccagagga tgatggacga tggacgatgg 1681 atgcagaagc tgtagattgt aattgacgag ggagaggaag atggagaggg agattcgatt 1741 gacgatcgat cgatgtgacg acgctgatat tgagagagtt ggatatgtgt agttggagaa 1801 ggagaaggag aacagcaacc aaatacgaac caataggaaa accagaagaa aactgcaaca 1861 cactgcaact gcaacctgca acagcaaaac aataagttgg aaataaggca gaaacttatt 1921 tttagtagta aaataattaa cgaagagaga aaccagcaaa agcaaaagca accacttaat 1981 taattgtata agctatatat atacatacac gattgactat atatataggg aggacaggca 2041 gagagaagaa tgtttgcgcc tattgtttat gttcagcatt tcccccttcc ccatctaaac 2101 cacccaccac caacgatccc ccactctata tatttagttt gttatgtttt catcttagcc 2161 gatcgactaa ccaccaccac caccctaatg ctttatcccc ccaaaatgcc cgaaatgtcc 2221 gacccaccag caccaccacc ccgcctgaaa acctaaaaaa attactaact tgataacatt 2281 ttacttttaa tttaactata atttattatg caaacaagat acaaacgaga gaaatacaat 2341 acataaaaac aagtgtaaag aaaccaacaa atacattaaa aaaacgaaac aaaactcaat 2401 aaaaaaacag aacaataaat aatataaagc atagagagta gttattgcca acaactatct 2461 aaaaccagtg gaatctgcaa agcgttcgtt cattgccttg tgtgcaagtg tgtattcgag 2521 aaagcaaacc cacaataaat cgtagcaaac ttgaagatcg aaaatcgtaa