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LOCUS XM_017137850 3520 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017137850 VERSION XM_017137850.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137850.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3520 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3520 /gene="fz4" /note="frizzled 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108054781" CDS 879..2975 /gene="fz4" /codon_start=1 /product="frizzled-4" /protein_id="XP_016993339.2" /db_xref="GeneID:108054781" /translation="MKHAWMIYPLLLILLHSRCTRATSGGSPGSASSSSPPEMPAFRQ CETIRIEMCRKIGYNETSMPNLVGHEMQTDVEYTLQTFAPLIEYDCSSQLKLFLCAAY VPMCTPKAPVHAIGPCRSLCESVRIRCHPVLQGFGFPWPPALDCERFPRENNHETMCM EGPGEVHQPQQDQDPYGLPGQPLGGGLPGGKLPLDCSGLAKSHLYVRLPRSGRCAPLC EADILFTPAEKHLAEIWVSTWAYAACGLALVATGCLLASDGSRLASAKWSRLLSPLVW CHNMVTLGWAVRFVVGRTGTACGTDPQAPSESLLSVDGLSNASCASVFLMRYYFGMAA CAWWAVLCLGWHRDIRRHSPDSKGHVAIPANFGGSPSKRSGVKSAQQDLSQNNFVCFV AWGLPAFQTAAVIVARFVDADELLGACFVGNQSDKALQILVATPVFCYWIFGSMNLIS GYLVHCRTKEILRSSNTLSLQQQLQQLSAHSSSGIGVFLFIYGLSCALLLLAVIYEFA NIDVWLGSGDTDTPLWPFLLRAFMELMLGICCFAWVLGPSISTLYKRQVKMVKQPTAA AGGAGGAGGADGHSSSRGSHAACNSTVVSYHSVRPSMASAPLPQSPYKLKAAGSISLH QMSNYSLGRSMQHQQQQRSSHSPHHHHQQQLQQHHHHHHHSSSSHRLYYPPGSYASQK YSYYPHLQHYGDETLL" misc_feature 1002..1382 /gene="fz4" /note="Cysteine-rich Wnt-binding domain of the frizzled 4 (Fz4) receptor; Region: CRD_FZ4; cd07448" /db_xref="CDD:143557" misc_feature order(1032..1034,1038..1046,1050..1058) /gene="fz4" /note="putative Wnt binding site [polypeptide binding]; other site" /db_xref="CDD:143557" misc_feature 1542..2552 /gene="fz4" /note="class F frizzled/smoothened family, member of the 7-transmembrane G protein-coupled receptor superfamily; Region: 7tmF_Frizzled_SMO; cd13951" /db_xref="CDD:320089" misc_feature order(1545..1547,1572..1574,1731..1733,2115..2117, 2130..2132,2136..2138,2163..2165,2406..2408,2415..2420, 2439..2441,2454..2456,2463..2468) /gene="fz4" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:320089" misc_feature 1569..1646 /gene="fz4" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:320089" misc_feature 1680..1745 /gene="fz4" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:320089" misc_feature 1839..1919 /gene="fz4" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:320089" misc_feature 2040..2090 /gene="fz4" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:320089" misc_feature 2154..2243 /gene="fz4" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:320089" misc_feature 2319..2402 /gene="fz4" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:320089" misc_feature 2433..2510 /gene="fz4" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:320089" polyA_site 3520 /gene="fz4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 taactagaac tggtcacaca gtcaacgaaa aaaaaatgaa ttacgaagta aactagttgt 61 ttatttttgt ttcaaaacaa catttatttc agttttttta agtttccgca ggaagttcag 121 tgaaatttat aagagttgca gtgatttagc caagtgtttt cgcgttaatc ccgtaggaaa 181 aacccgtttg gcgacttgga gcagcggggg gcggagcagg ggaaagggga gcgtacgagc 241 ggatggggaa ggagaatgag gtggggagag aggcgaagcg ataacaagaa cgacgccgaa 301 aaaaaaggta gttaacgagt tggagttgac aagccgaggc aacaataaca agctggagag 361 ctggaaatta ttggaaagag cgaggcagaa agagagagag agagagagag ggcgagaacc 421 tggaacaggt taccccttcc agcgatccac tgaagaatcc acagaatctg cataaagttc 481 ggattcttcg ggaagaaaag agtttacctg tggcgacgaa gaaatcccca agatcggatt 541 gttcgggcag aaaagtagtg gaagccccga agatcggagc aattctccgg gaagaaagaa 601 agaactaacc tttggtgaag aaatccccaa gattggattc ttcgggtaga aaagaaaggg 661 aaacccaccg agcatcggat caattctccg ggaagcggag aaaagcaatc cctagatcaa 721 attctcctcg ggaaaaaaga aagaggtaac cttttagtga agaaatacct aagattggat 781 tcttcgggta gaaaagaagt ggagaattct ccgagaagcg gagaaaagca atcccaaaat 841 caaattcttc ggaagataaa caataaaatc gattagaaat gaagcatgcc tggatgatat 901 accccctgtt gctgattctc ctgcattccc gctgcacccg ggcgacatct ggcggcagtc 961 ccggcagcgc cagttccagt tccccgcccg agatgcccgc cttccggcag tgcgagacca 1021 tccgcatcga gatgtgccgc aagatcggct acaacgagac ctccatgccg aatctggtgg 1081 gccacgagat gcagacggac gtggagtaca cgctgcagac cttcgccccg ctgatcgagt 1141 acgactgcag ctcgcagctg aagctcttcc tgtgcgccgc ctacgtgccc atgtgcacgc 1201 ccaaggcgcc ggtccatgcg atcggtccct gccgcagtct ctgcgagtcg gtgcggatcc 1261 gctgccaccc ggtcctccag ggattcggct tcccctggcc gccggcgctc gactgcgagc 1321 ggtttccgcg ggagaacaac cacgagacca tgtgcatgga gggtccaggc gaggtgcatc 1381 agccgcagca ggatcaggat ccctacgggc tcccaggaca gccgctgggc ggcggactac 1441 cgggtggaaa actgccgctc gattgctcgg gcctggccaa atcgcatctg tacgtgcgac 1501 taccgcgatc cggacgctgt gctccgctct gcgaggcgga catcctgttc acgccggccg 1561 agaagcacct ggccgagatc tgggtctcca cctgggccta cgccgcctgc ggcctggccc 1621 tggtggccac cggctgcctg ctggccagcg atggcagccg cctggccagc gccaagtggt 1681 cgcggctgct ctcgccgctc gtctggtgcc acaacatggt caccctcggc tgggccgtgc 1741 gcttcgtggt gggccggacg ggcactgcct gcggcaccga tccccaggca cccagcgaat 1801 cgctgctcag cgtggacgga ctgtccaacg cctcctgcgc cagcgtcttc ctcatgcgat 1861 actacttcgg gatggctgcc tgcgcctggt gggctgtgct ctgtttgggc tggcaccgcg 1921 acatccggcg gcacagtccc gactccaagg gccacgtggc cattcccgcc aacttcggag 1981 gcagtccgtc aaagaggagc ggcgtaaaga gcgcccagca ggatctgagc cagaacaact 2041 ttgtgtgctt cgtggcctgg ggattgccgg ccttccagac ggcggccgtc atcgtggccc 2101 gtttcgtgga cgcagacgag ttgctgggcg cctgcttcgt gggcaaccag tcggacaagg 2161 ccctccagat actggtggcc acgccggtct tttgctactg gatcttcggc tccatgaacc 2221 tgatctccgg ctacctggtg cactgtcgca ccaaggagat cctgcgtagc agcaatacgc 2281 tgagcctgca gcagcagctg cagcagctga gtgcccacag cagctccggc atcggcgtgt 2341 tcctcttcat ctacggcctc tcctgcgccc tgctcctgct ggcggtcatc tacgagttcg 2401 ccaacatcga tgtctggctg ggatcgggcg acacggacac cccgctgtgg cccttcctgc 2461 tgcgcgcctt catggagctg atgctgggca tttgctgctt tgcctgggtc ctcggaccga 2521 gcatttccac gctctacaag cggcaggtca agatggtgaa gcagccgacc gcagccgcag 2581 gaggagcagg aggagctgga ggagctgacg gacacagcag ctcgcgggga tcgcatgcgg 2641 cctgcaacag cacggtcgtt tcctatcatt cggtgcggcc ctcgatggcc agtgctccgc 2701 tgccgcagag tccctacaag ctgaaggctg ccggctccat atcgctgcat cagatgtcca 2761 actattcgct gggcaggagc atgcagcatc agcagcagca gcgcagtagc cattcgccgc 2821 atcatcatca tcagcagcag ctgcagcagc accatcacca ccaccatcac tcctcctcct 2881 cgcatcgcct gtactatcca ccgggtagct acgcctcgca gaagtacagc tactatccgc 2941 acctgcagca ctacggcgat gagacgctgc tctagggggg atcctcatcc ccatttaaac 3001 cttccaaacc agtcaatgtt cctgcggcag ctgctgtgcg ccaaagtcag tccttaggtt 3061 tagggtattg actatctagt tgtttgtaaa ctaaccatat cttagttcgc tttggaaccc 3121 catctatgta ctgtgtatat aacccgggaa atgtcctctt atttagttta gctcatacac 3181 aatgtatcgt aattgcccat atcctatttt tggtgtgtac ttaatgtggc tcctaattag 3241 ctgccctttt gccgctttgg tctaaccaaa ttcaataata gctcttgcct ttttttttga 3301 caattagccc taatatcgcc tgtgcgtaat tatatatagc atttttgtat tactattttt 3361 tttgttcttg agttcttgag ttagagagag aaacacgcag caaccaaata ctgtgatacg 3421 catgttcatg tcttcgaaaa acaaaaacct actttgctgt cttctttttc ttattttaaa 3481 gccgaaacaa gtgtacttaa caaacgaaac gaaaaacaaa