PREDICTED: Drosophila takahashii doublesex-Mab related 11E

LOCUS       XM_017137845            1148 bp    mRNA    linear   INV 09-DEC-2024
            (dmrt11E), mRNA.
ACCESSION   XM_017137845
VERSION     XM_017137845.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq; corrected model.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017137845.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-51                JARPSC010000001.1  12066457-12066507
            52-84               JARPSC010000001.1  12066915-12066947
            85-189              JARPSC010000001.1  12066950-12067054
            190-754             JARPSC010000001.1  12067057-12067621
            755-1148            JARPSC010000001.1  12068873-12069266
FEATURES             Location/Qualifiers
     source          1..1148
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1148
                     /gene="dmrt11E"
                     /note="doublesex-Mab related 11E; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     deleted 4 bases in 2 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     Proteins"
                     /db_xref="GeneID:108054777"
     CDS             1..1083
                     /gene="dmrt11E"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 4 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: doublesex- and
                     mab-3-related transcription factor 1"
                     /protein_id="XP_016993334.3"
                     /db_xref="GeneID:108054777"
                     /translation="MHFHQSQSPNKDVRMGRSQRLAANGRRGDADTNPDPSDARMLRV
                     CTSDPLGDRDHLTLPDCLTAATSSQCLNVRAPVRSLLVDQRVRMSKDTSVTVTRICQR
                     ERRLLRTPKCARCRNHGVISCVKGHKRLCRWRECCCPNCQLVVDRQRVMAAQVALRRQ
                     QTMEALEATTSSSGSKHPVNGTTSGSEGEDSLASSSPPPPPSAHPQSPASVTNSSSSS
                     SATRQALMAQKRIYKQRLRSLQQSTLHITAAMEEYKQRFPTFSSPLMERMRKRRAFAD
                     PELNHVMEATLGGNALYFATVAAAVHQEHLYHPMPPTITPSVPPTFSPDDQMMRNTSG
                     TASISSISEKKPKLSFSIESIMGIST"
     misc_feature    322..462
                     /gene="dmrt11E"
                     /note="DM DNA binding domain; Region: DM; pfam00751"
                     /db_xref="CDD:459924"
ORIGIN      
        1 atgcactttc accaaagtca gagtccaaac aaagatgtgc ggatgggaag gagccagcga
       61 ttagcagcca atggcaggcg aggtgatgcc gataccaatc ccgatccctc agatgctcgg
      121 atgctacgtg tgtgtacctc ggatcccctg ggagaccgag accacttgac gctgccagac
      181 tgtctgacgg cggcgacaag tagccagtgt ttaaatgttc gcgccccggt ccgcagcctt
      241 ttagtcgatc agcgagtcag gatgagcaag gacacgagtg ttacagttac taggatttgc
      301 cagcgggagc gacgtcttct gaggacgccc aaatgcgcca ggtgccgcaa ccacggggtc
      361 atctcctgtg tcaaaggtca caagcgactg tgccgctggc gcgagtgctg ctgccccaac
      421 tgccaactgg tcgtcgatcg ccagcgggtg atggccgccc aggtggccct gcgccgccag
      481 cagacgatgg aggccctgga ggccaccacc tcctcctcag gatcgaagca cccggtgaat
      541 ggcacgacct ccggcagcga gggcgaggat tccctagcct cctcttcacc accaccacct
      601 ccgtcggctc atccacaatc cccagcatct gtgaccaact cctcctcctc atcatccgcc
      661 acccgacagg ccctgatggc ccagaagagg atctacaagc agagattacg cagtctgcag
      721 cagtccacgc tccatatcac agctgccatg gaagagtaca agcagcgatt tcccacgttc
      781 agttcgccgc tgatggagcg catgcgcaaa cgacgggcgt tcgccgatcc ggaactgaac
      841 cacgtcatgg aggcgacgct gggcgggaac gctttgtact ttgccaccgt tgccgccgcc
      901 gtccaccagg agcacctata tcacccaatg ccgccgacga taacgccctc tgttccgccc
      961 accttcagtc ctgatgatca gatgatgagg aacacctcgg gaacagcctc catctcctcg
     1021 atctccgaaa agaagcccaa gctgagcttc tccatcgagt ccatcatggg catcagcacg
     1081 tagtccccat ccaaaatact ctctgtacat agccctagaa ttagacgatc tttttttgac
     1141 tagacata