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LOCUS XM_017137558 4862 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017137558 VERSION XM_017137558.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137558.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4862 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4862 /gene="rdgB" /note="retinal degeneration B; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108054546" CDS 598..4485 /gene="rdgB" /codon_start=1 /product="protein retinal degeneration B isoform X1" /protein_id="XP_016993047.2" /db_xref="GeneID:108054546" /translation="MLIKEYRIPLPLTVEEYRIAQLYMIAKKSREESHGEGSGVEIII NEPYKDGPGGNGQYTKKIYHVGNHLPGWIKSLLPKSALTVEEEAWNAYPYTRTRYTCP FVEKFSLDIETYYYPDNGYQDNVFQLSGSDLRNRIVDVIDIVKDQLWGGDYVKEEDPK HFVSDKTGRGPLGEDWLEEYWREVKGKKQPTPRNMSLMTAYKICRVEFRYWGMQTKLE KFIHDVALRKMMLRAHRQAWAWQDEWFGLTIEDIRELERQTQLALAKKMGGGEECSDD STSEPYVSTAVTAASTTGSERKKSAPAVPPIVTQQPPSAEASSDEEEGEEEDDDEDEN DAIGTGVDLSANQGGSAQRSRSQSIQMAQKGKFGSKGALHSPVGSAHSFDLQSKKPHA KTAPRRHVANWRMERLEVDSKSNSDEEFFDCLDTNETNSLAKWSSLELLGEGDDSPPP HGGPSSAASVGGRGSSRQEDSIFNQDFLMRVASERGNKRQLRSSASVDRSHDSSPPGS PSTPSCPTTILILVVHAGSVLDAASELTAKKSDVTTFRGSFEAVMRQHYPSLLTHVTI KMVPCPSICTDALGILSSLSPYSFDASPSAADIPNIADVPIGAIPLLSVASPEFHETV NKTVAAANIVYHEFLKSEEGHGFSGQIVMLGDSMGSLLAYEALCRSNGSQPGTASNSG GDAAASNVNTHNPLGARHSRLDDDERFIEADLDAKRLLVAPSPRRRRSSSSSDSRASK LDFEVCDFFMFGSPLSVVLAARKLHDAKAALARPNCHQVYNLFHPTDPIASRLEPLLS ARFSILAPVNVPRYAKYPLGNGQPLHLLEVIQSHPQHFNDGNNLLAGRRLSDASMQST ISGLIENVSLSTIHALQNKWWGTKRLDYALYCPEGLSNFPAHALPHLFHASYWESPDV IAFILRQIGKFEGIPFVGSNDDKDNASFHPGQPREKWIKKRTSVKLKNVAANHRANDV IVQEGREQRLNARFMYGPLDMITLHGEKVDVHIMKDPPAGEWTFLSTEVTDKNGRISY SIPDQLSLGYGIYPVKMVVRGDHTSVDCYMAVVPPLTECVVFSIDGSFTASMSVTGRD PKVRAGAVDVCRHWQELGYLLIYITGRPDMQQQRVVSWLSQHNFPHGLISFADGLSTD PLGHKTAYLNNLVQNHGISITAAYGSSKDISVYTNVGMRTDQIFIVGKVGKKLQSNAT VLSDGYAAHLAGLQAVGGSRPAKGNARMVIPRGCFNLPGQTANPRRRSNAFELQLANI SPCSSNINSPGSSNHILLAQLIENAIEKDTPAA" misc_feature 598..1401 /gene="rdgB" /note="Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs); Region: SRPBCC_PITPNM1-2_like; cd08889" /db_xref="CDD:176898" misc_feature order(658..663,670..672,682..684,691..693,715..717, 772..774,778..780,784..786,790..792,799..801,805..807, 814..816,826..828,838..843,847..849,853..855,859..861, 865..867,880..882,886..888,892..894,901..906,922..924, 928..930,1201..1203,1219..1221,1225..1227,1255..1257, 1279..1287,1294..1296) /gene="rdgB" /note="putative lipid binding site [chemical binding]; other site" /db_xref="CDD:176898" misc_feature 790..846 /gene="rdgB" /note="putative lipid exchange loop [active]" /db_xref="CDD:176898" misc_feature order(949..1038,1054..1128,1183..1188) /gene="rdgB" /note="putatative regulatory loop [active]" /db_xref="CDD:176898" misc_feature 1087..1089 /gene="rdgB" /note="putative PKC phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:176898" misc_feature 2818..3363 /gene="rdgB" /note="DDHD domain; Region: DDHD; pfam02862" /db_xref="CDD:460725" misc_feature 3805..4200 /gene="rdgB" /note="This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins; Region: LNS2; smart00775" /db_xref="CDD:197870" polyA_site 4862 /gene="rdgB" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agttcagaat cgaacgcgag cgagccgagt cgcaattcgc cgccgcgcag cgcgtgctgt 61 tttttttcag tgtgtacgtt ttgattgcaa gaagaaataa gcagaggaaa acgctgaaaa 121 catttctcat ctgcggcctg gaaaagcgcc ccgaagaaaa tgaatagata aattgtgtta 181 atcgccccat cgagccagca gatattcact gtatatttat attttgttgt tgtgcgtacg 241 atttctgttg cgtttgggca ttactctttt gttgttaatt gtgcagctgc ccgcctgcga 301 atgataaaaa tgtcatagac gacgcctcgc cccgcaccca agcaccccga aagtgtcgga 361 cgacagcgtc gcctccacgt catccagcca tgaccagcgg caatcgatga ttgccattcc 421 ctcagccaac gagagccaat agaggcagcc ggaaaggagc ggatccgtcg gaagagcccg 481 ccactcgcca ctcgccattc gaacgaaccc atcaacagcc gcaggagggg ccttcgcttc 541 cctgcttcaa ctgccctttg aaagccaagg actaaagtca cacggtcacg ggtcaacatg 601 ctgatcaagg agtaccgcat tccactgccc ctcaccgtgg aggagtaccg catcgcccag 661 ctctacatga tagcgaaaaa gagtcgcgag gagagtcatg gcgagggcag tggggttgag 721 attatcatca atgagcccta taaggacggt cccgggggaa atggtcagta cacgaagaag 781 atctaccatg tgggcaatca tctgccaggc tggatcaaga gtcttttgcc caagagcgct 841 ttaaccgtgg aggaggaggc ctggaatgcc tatccctata ccaggactcg ctacacctgc 901 ccatttgtgg agaagttctc gctggacatt gagacatact attacccgga taatggctac 961 caggataatg tctttcagtt gtccggaagc gatctgcgta accgcatcgt ggatgtaatt 1021 gacattgtga aggaccagct gtggggcggc gattatgtca aggaggagga tcccaagcac 1081 ttcgtgtcgg acaagacggg ccgcggacct ctgggcgagg actggctgga ggagtactgg 1141 cgcgaggtga agggcaagaa gcagccgacg ccccgcaaca tgtccctgat gaccgcctac 1201 aagatctgcc gcgtggagtt ccgctactgg ggcatgcaga cgaagctgga aaagttcatc 1261 cacgacgtgg cgctgcgcaa gatgatgctg cgcgcccatc ggcaggcgtg ggcgtggcag 1321 gacgagtggt tcggcctgac catcgaggat atccgcgagc tggagcgcca gacccaactg 1381 gccctggcca agaaaatggg cggtggcgag gagtgcagcg acgatagcac ttcggaaccc 1441 tatgtgagca cggcggtcac cgccgcctcc acaacgggca gcgaacggaa gaaatccgct 1501 ccggccgtgc cgcccatcgt aacccaacag ccgcccagcg cggaggccag ttcggatgag 1561 gaggagggcg aggaggagga cgacgacgag gacgagaacg atgccattgg cacgggcgtc 1621 gatctgtccg ccaatcaagg tggatccgcc caaaggtccc gatcccagag catccagatg 1681 gcgcagaagg gcaaattcgg gtccaagggg gccctccatt cgcccgtggg atctgcccac 1741 agctttgatc tccagtccaa aaagccgcat gcaaagacag cgccacgcag acatgtggca 1801 aactggcgca tggagcgatt ggaagtggac tccaaatcca attcggatga agaattcttc 1861 gactgtttgg acaccaatga gacgaactcg ctggccaagt ggagctccct ggagctgctg 1921 ggcgagggcg acgacagtcc gccgccgcat ggcggaccct ccagcgctgc ctccgtgggc 1981 ggacgaggca gctcgcggca ggaggacagc atcttcaacc aggacttcct gatgcgcgtg 2041 gcctcggagc gtgggaacaa gcggcaattg cgctcctcgg ccagcgtgga tcgcagccac 2101 gactcgtcgc cgccgggctc gccgagcaca ccgtcatgcc ccacaaccat cctgatcctg 2161 gtggtccatg cgggcagtgt tttggatgcg gccagcgagc tgacggccaa gaaatcggat 2221 gtcaccacct ttcgcggctc cttcgaggcg gtgatgcgtc agcactaccc gagcctgctc 2281 acccatgtga ccatcaagat ggtgccgtgt ccctcgatct gcaccgacgc cctgggcatc 2341 ctctccagcc tgagtccgta ctccttcgat gcctccccct cggcggcgga tataccgaat 2401 atagccgacg ttccgatcgg tgcgatacct ctcctctcag ttgcttcgcc ggaattccat 2461 gagacggtca acaagacggt ggccgctgcg aatatagtgt accacgaatt cttgaagtcg 2521 gaggagggcc acggattctc cggacagatt gtgatgctgg gcgattcgat gggctcgctg 2581 ctggcctacg aggcgctctg ccgatcgaat ggcagccagc cgggcacagc ctcgaattcc 2641 ggcggagatg cggcggccag caatgtgaat acccacaatc cgctgggcgc tcgccattcg 2701 cgtttggacg acgacgagcg gttcatcgag gccgatctgg atgccaagcg gctgctggtg 2761 gccccgtcgc cgcgtcgtcg ccgttccagc tcctcgagcg actcgcgggc cagcaaactg 2821 gactttgagg tctgcgactt cttcatgttc ggctcgccgc tgtcggtggt gctggcggcg 2881 cggaaactgc acgatgccaa ggccgctctg gcccggccga actgccatca ggtgtacaat 2941 ctgttccatc caaccgatcc gattgcctcg cgtctggagc cgctgctcag cgcgagattc 3001 tccattttgg cgccggttaa tgtgccccgg tatgccaagt atccgctggg aaatggtcag 3061 ccattgcatt tattggaggt gattcagtcg catccgcagc actttaacga tggcaacaac 3121 ctgttggccg gaagacgact ctcggatgcc tcgatgcaga gcacgatatc gggtctgatt 3181 gagaatgtct cgcttagtac gatccatgcc cttcaaaaca aatggtgggg caccaagcgc 3241 ttggactacg ccctctattg ccccgaggga ctgagcaact ttccggccca cgccttgccg 3301 catctcttcc acgccagcta ctgggagagc ccggatgtga ttgcgttcat cctgcggcag 3361 attggcaaat tcgagggcat accctttgtg ggctccaatg acgacaagga caacgcctcc 3421 tttcacccag gacagccgcg cgagaagtgg atcaagaagc gcacctcggt gaagctgaaa 3481 aatgttgcgg ccaatcatcg ggccaacgat gtgatcgtcc aggagggcag ggagcagcgg 3541 ctgaatgccc gcttcatgta cggacccctc gacatgatca cgctgcacgg cgagaaggtg 3601 gatgtgcaca tcatgaagga tccgccggcg ggcgaatgga cattcctcag caccgaggtg 3661 acggacaaga acggtcgcat ctcgtacagc attccggatc agttgtccct cggctatggc 3721 atctatccgg tcaagatggt cgtccgcggc gatcacacct cggtggattg ctacatggcg 3781 gtggtgccgc ctttgaccga gtgcgtggtc ttcagcatcg atggctcctt caccgcctcg 3841 atgtcggtga cgggcaggga tcccaaagtt cgggccggcg ccgtcgacgt ctgccggcac 3901 tggcaggagc tgggctacct gctgatctac atcaccggac gacccgacat gcagcagcag 3961 cgcgtcgtct cctggctgag ccagcacaac ttcccccacg gcctcatctc gttcgccgac 4021 ggcctgtcca ccgatccgct gggccacaag acggcctatc tcaacaacct ggtgcagaac 4081 cacggaatct caatcaccgc cgcctacggc agcagcaagg acatcagtgt ctacacgaat 4141 gtgggcatgc gaaccgatca gatcttcatc gtgggcaagg tcggcaagaa actgcagtcc 4201 aatgccactg tgctgagcga tggctacgcc gcccacttgg ccggtttgca ggcggtgggt 4261 ggttcgcgtc cagccaaggg caatgcccgc atggtcatcc cccgcggatg cttcaatctt 4321 cccggccaga cggcgaatcc gcgacgcaga agcaacgctt tcgagctgca attggccaac 4381 atcagtccct gcagcagcaa catcaacagt cccggcagca gcaaccacat cctactggcc 4441 cagctgattg agaatgccat tgaaaaggac accccagctg cctaggagaa ctagatgaag 4501 atgcttacat atttcttgtt ttgattttaa gttaatagtc tcatccatcc tctcaaaact 4561 agtccgccac gaatcgtatt gtattgtatt ttattctatt ttaaagtctt aagtttccta 4621 agtttcacgt agaacaaatg ccgtattatt tatgatataa gttattacta ttatgattat 4681 tattattatt gtaattatta ccgcctttat gtactatcct tatttgtatt tgtatgatat 4741 tattttgatt gcgaacaaaa gccaaaatgc aacaaaacat aagaaatacg tacgccagta 4801 tgtagtacca aataaacaaa agcagtacag taaatgggcc tgttgaaaat atatatatct 4861 ta