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LOCUS XM_013256948 5093 bp mRNA linear INV 02-SEP-2023 (LOC106090670), mRNA. ACCESSION XM_013256948 VERSION XM_013256948.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013256948.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5093 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5093 /gene="LOC106090670" /note="tyrosine-protein kinase hopscotch; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins" /db_xref="GeneID:106090670" CDS 358..3918 /gene="LOC106090670" /codon_start=1 /product="tyrosine-protein kinase hopscotch" /protein_id="XP_013112402.1" /db_xref="GeneID:106090670" /translation="MNQCSNTSGTTHTTITVLEDSGSSIGSASISGLSNGIHNLDLEQ SNERDHDTTSNTTASQNSQCYTERMRQINLPLEAETTTHRIYCYRKRIFIEFEHLTNT ASEEICIEISRRMGILPNTRLLFGLKVYEDSNQEEWCLPGQPLRPGVKYCFRMRFKMP PLDGQLQSMDPNAYEYLYNQMRHDMVHDCIPSIRYPLKKDNVMGLGAVDMYIDSLEHR EPVDRIESNYKRYLPRPLVKAHKIFIKRKICNSFRLLREKKIELARVKWNYVLQLNNL APDYLLETFKGVVDFIPGDISTSVPVDGGGSLANPTTANVFIKLDLYDTPEPGLKVAR RTSKDKLEWALVSKLENIYAVYTRGVSPNTLSCRLEITGMPNGYRIQFESKIQLEAFI SYLSGYMRLTTKWMVNLCLQYSTPSLEELIALHCHGPIGGAFSFAKIREQGNKCGSYI IRQCEKEYDTYYIDINTKSICEGLQPEKFKTETFKITKEVNMAFKNQIVVKTIMWKLH LNGTIEVFDKLNKLANFLQTESERKTRLSPSDNDKSPLLLICLPKNVQSKKTEKELSE AELQRKRVQILDLAKDLQWYHNSSRNCDNSKMTEIKADWIQDGGFKDVTVTLKVLKFE EDFKEFRSLASTWSRIQSPHIIKLFGLTLEPPFTMVMEYCKFGPLSEFLRHNKTKVSL RQLIDVVHGLVRGIVYLRNHHIIHGYIRCANLYVTKFDTKTQILEAKISDSGFPRAYR RDDLPWIPFEYHNNLRAAKKEPDVDVWAFATTVWEIFSRGEPIGLVTTEMLRQNYSRD GGILPMPDDCPPEIAEIIMDGWNTDPEKTFNHMQIIERLSCIKESHSTDSTTRDVSEN IFENLEDDRALHNGFTEQSDIFSFPSYFNATNSVLEIPRGKVIFKKKIGEGHYGTVHL GEVRYNDSNTREYVAIKTLKSARATQLSNDFMREIEIMESLSHRNIVKIKHWIQRPFC IIMEYLESGSFLVYLTSKKPNLTNPILLGFALDIARGMDYLAGQNIIHRDLAARNILV DRDSVKISDFGLAQRADSDGYYVPHSSREIPIKWYAPEAIKKDAKFSSQSDVWSYGVT LFEMFSRGESPNLEPNVELSQEEFLMRLDRGDRLRKPTLCEDHIYNRLMKPCWHGNPK MRPNFGEIIGIIQSIRNEDINTIPKSDFNISPPTSPTSMN" misc_feature 601..1212 /gene="LOC106090670" /note="Band 4.1 homologues; Region: B41; smart00295" /db_xref="CDD:214604" misc_feature 1591..1938 /gene="LOC106090670" /note="Src homology 2 (SH2) domain in the Janus kinase (Jak) family; Region: SH2_Jak_family; cd09921" /db_xref="CDD:198177" misc_feature order(1651..1653,1711..1713,1804..1806,1810..1812) /gene="LOC106090670" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198177" misc_feature order(1807..1809,1933..1935) /gene="LOC106090670" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198177" misc_feature 2167..2868 /gene="LOC106090670" /note="The protein kinase superfamily is mainly composed of the catalytic domains of serine/threonine-specific and tyrosine-specific protein kinases. It also includes RIO kinases, which are atypical serine protein kinases, aminoglycoside phosphotransferases; Region: Protein Kinases, catalytic domain; cl21453" /db_xref="CDD:473864" misc_feature 3049..3831 /gene="LOC106090670" /note="Tyrosine kinase, catalytic domain; Region: TyrKc; smart00219" /db_xref="CDD:197581" misc_feature order(3067..3081,3091..3093,3142..3144,3148..3150, 3280..3291,3298..3303,3421..3423,3433..3438,3442..3444, 3472..3474,3526..3540,3565..3567,3682..3684) /gene="LOC106090670" /note="active site" /db_xref="CDD:270623" misc_feature order(3067..3072,3076..3081,3091..3093,3142..3144, 3148..3150,3280..3291,3298..3303,3433..3438,3442..3444, 3472..3474) /gene="LOC106090670" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270623" misc_feature order(3421..3423,3433..3435,3526..3540,3565..3567, 3682..3684) /gene="LOC106090670" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270623" misc_feature order(3469..3492,3526..3546) /gene="LOC106090670" /note="activation loop (A-loop); other site" /db_xref="CDD:270623" polyA_site 5093 /gene="LOC106090670" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gaagtcttaa agagtttaat ataactataa taaaaaaata agttagtgaa aatgcaattg 61 tcatttaaga ttattttgct cgatctaatc gctctgcccc gctggactta gttaactgtc 121 tatgctggga tgcaatgaaa cctctgtcaa tgctcgtctt attgcacaaa aaaggaaaga 181 cgacataaac aagtttgctg tgtctatata tacctatata cttatgctgc gctgcgtaca 241 atacgagtgt ggctgttgca ttaaaaatta taatattata gaaaaaatat aacaattata 301 ttttttcgat atcattcttg gaaatacgga ataacgacgg caactacaca accaaacatg 361 aatcaatgtt cgaatacatc gggtacaaca cataccacca taacggtctt ggaagacagc 421 ggcagttcca ttggtagcgc gtccatttcg ggccttagca atggcataca taatttagac 481 ttggagcaaa gcaatgagcg tgaccatgac acaacaagca ataccacggc atcgcaaaac 541 tcccaatgct acaccgaaag aatgcgtcaa ataaatttgc cattggaagc ggaaacgact 601 acacatcgca tatattgcta tcgcaaaaga atattcattg aatttgaaca cttaacgaat 661 actgctagtg aagaaatatg tatagaaata agtcggcgga tgggtatact cccaaacaca 721 agattactat ttggcttaaa ggtttacgaa gatagtaatc aagaggaatg gtgtttaccc 781 ggacaaccat tgcgtcctgg ggttaaatat tgctttcgta tgcgtttcaa aatgcctcct 841 ctagatggcc agctacaatc catggatcct aatgcatatg aatatttata caaccaaatg 901 cgccatgata tggtgcatga ttgcattcca tccattcgat atcctttaaa aaaagacaat 961 gtaatgggcc taggagcggt tgatatgtac atcgactcat tggaacatag ggaacctgtg 1021 gatcgcattg aatccaatta taaacgctat ttaccccgcc ccttggttaa ggcccataaa 1081 atatttataa aacgtaaaat atgcaactca tttcgtttgc tacgtgagaa aaaaatcgaa 1141 ttggcgcgag tcaaatggaa ttatgtactc cagctcaaca atcttgctcc agactactta 1201 ttggagactt ttaagggcgt cgtggatttt atacctggtg acatatcgac ttccgttcct 1261 gttgacggag gtggtagtct tgccaatcca acgacggcca atgtttttat aaaactggat 1321 ttgtacgata cccctgagcc cggcttaaaa gtcgccagaa gaacgagtaa ggacaaactg 1381 gagtgggcct tagtgagtaa acttgagaac atttatgcag tgtacacacg tggggttagc 1441 cccaatacac tgagctgccg cttggaaatc accggtatgc caaatggtta ccgcatacaa 1501 tttgaaagta aaattcaact ggaggcattt atttcttatc tctctggcta tatgagatta 1561 accactaaat ggatggtaaa tctttgccta caatactcta caccctcatt ggaggaatta 1621 atagcgctac actgtcatgg tccaatcggt ggcgccttct cctttgcaaa aatacgtgaa 1681 caaggtaaca aatgcggcag ttatattatt cgtcaatgtg aaaaggaata cgatacatat 1741 tacattgata tcaacacaaa atcaatatgt gaaggattac agccagaaaa attcaaaacg 1801 gagacattta aaattacaaa agaggttaac atggcattta aaaatcaaat agtggtgaag 1861 actattatgt ggaaattaca tttaaatgga actatagaag tttttgataa actaaacaag 1921 ctggcaaatt ttttacaaac agaatcagag cgtaaaaccc gtctatctcc atcagataat 1981 gacaagtcgc cgcttttgtt aatatgtttg ccaaaaaatg tgcaatcaaa aaagactgaa 2041 aaggaattaa gcgaagctga actccaacgt aaacgtgtgc aaatacttga tctagccaag 2101 gacctgcaat ggtatcacaa ttcttctcgc aattgtgaca atagtaaaat gacagaaata 2161 aaagccgatt ggatacaaga tggaggattt aaagatgtta cggttacact taaagtactt 2221 aaatttgaag aagacttcaa ggaatttaga agcttggctt ctacttggag tcgtatccaa 2281 tcccctcata tcataaaact atttggtctg actttggagc ccccatttac catggtcatg 2341 gaatattgta agtttggacc actcagcgaa tttttaagac acaataagac aaaagtgtca 2401 ttgcgtcaat taatagatgt cgttcatggc ttggttagag gcatagtata tctgcgaaat 2461 catcacatca tacatggcta tatacggtgt gcaaatttat atgttacaaa atttgacact 2521 aaaacacaaa ttctggaagc aaaaatctca gattcaggat ttccgcgggc ctaccgaaga 2581 gatgatttac cctggatacc tttcgaatat cacaataact taagagctgc taaaaaagaa 2641 cctgatgttg atgtatgggc ctttgctaca acagtgtggg aaatattctc acgtggcgag 2701 ccaattggct tggtgacaac tgagatgctg agacaaaact acagcagaga cggtggtata 2761 ctacccatgc cagacgattg cccaccagaa atagccgaaa ttataatgga cggttggaat 2821 acagacccag aaaaaacctt caatcatatg caaataatag aacgtttaag ctgcataaag 2881 gagagccaca gtaccgattc tacaaccaga gatgtttcag aaaacatttt tgagaatttg 2941 gaagatgatc gggccctaca caatggtttt actgaacaga gcgatatttt cagttttcct 3001 agttatttca atgcaacgaa ttcggtgcta gaaataccgc gtggcaaagt aatattcaaa 3061 aagaaaattg gcgaaggcca ttacggcact gttcatttgg gtgaggttcg ttataatgat 3121 agtaatacaa gggaatatgt agccataaaa acattaaaat cagctagagc aacacaactg 3181 agtaatgatt ttatgcgtga aatcgaaata atggagtctc tctctcatcg aaatattgtc 3241 aaaattaaac actggataca acgaccgttt tgtataataa tggaatattt ggaaagtggt 3301 tcctttttag tatatttaac ttcgaaaaaa ccaaacttga cgaatccaat tctattgggt 3361 tttgctttgg acattgcgag aggtatggac tatttagctg gccaaaacat aattcatcgc 3421 gatttggctg ctcgtaatat tttggttgac agagatagtg tcaaaatatc cgattttggt 3481 ttagctcagc gagcagattc agatggctat tatgtacctc atagtagtcg tgaaatacca 3541 attaaatggt atgcgcctga ggcaattaaa aaggatgcca aattttcatc acaatccgat 3601 gtatggtcct atggtgttac actgtttgaa atgttttcaa ggggagaatc accaaatctc 3661 gaacctaatg tggagttatc acaagaggaa tttttgatga gactggatag aggagatcga 3721 ttacgaaaac caaccttgtg tgaggaccat atttacaatc gtcttatgaa gccctgttgg 3781 cacggtaatc caaagatgcg accaaatttc ggcgaaatca tcggtattat acagtcaatt 3841 agaaatgaag acatcaacac tataccaaag tcagatttta atatttcccc gcctacatcg 3901 cctacgtcaa tgaattaatt tagaatcgaa actaaatacg aatggaaaaa caacaacaac 3961 aaaaattcaa ctcaagtgca agtatgactt tttatacata ttgatggatg gatcacaaac 4021 ctacaaacaa agtatactaa taacaattaa gatgagaaat gttttaattt taatacacaa 4081 tagtttcaaa gagaaaaggt ccagctgaat aggaatggaa tggggtttct ttatttgtag 4141 actaatgata tattaagttg tacaacaaaa aagctacaca ccttttgttt ttgtcgattt 4201 ttcgcctgta atagattgag gttctagcac ttttacgata agcaacattg aataggtaaa 4261 caaaaattgt atgatcttgc accttgttcc attgtttttt gttttatttt tttaatttgt 4321 tgaagtaaga aggtaatctc tcgactctgc gaaaagtttt acacttttgt tttattatat 4381 gtagtagaaa ttatatattt taaataaata aaatgtacta taaaagttcg cctaatgttt 4441 ttgcataagc tgtgtatgta tgtatgtttt tatttttaaa tttaattata atttaagtgc 4501 cttctggacg agagaagaac ctaaaacata gtttttgcgt ttatgtgttg agaaaaaaat 4561 gcaacaatta tatatttaac tatataaata tctaaacggt agtttaattt taactaatta 4621 tgtacatggt ttttatgttt gtaaatcgat tttgttttac acgcattttt ttaacgatat 4681 atgcatacat acatttagaa atatatagca ccctcacttt atgttttcgc cctcactttc 4741 ccaacgccct acccataaat tgttatattt tttttattat tatgtgtcta ataaataaaa 4801 ttttattcaa aagcttaaaa ggagaatttc atcggcacat ttctcaaacc aaaaaatgca 4861 gaacaaaact ttaagtcttc gaatttcatg accttcgaca ttgacaaaat ccatgaagaa 4921 ttaaatgttt ttttattcac acaaagacta ggatacaaat acttgatcag cttgttgttg 4981 tatgatcttg ccttgtaatt tttaataatc ttaagtatct acgtaagatt ttaatgtaac 5041 aaacgaaata aaagttcacg caaaaatgtg aaataagtca tttggagtaa aaa