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LOCUS XM_013252029 1770 bp mRNA linear INV 02-SEP-2023 subunit alpha, mitochondrial (LOC106087108), transcript variant X2, mRNA. ACCESSION XM_013252029 VERSION XM_013252029.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013252029.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1770 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..1770 /gene="LOC106087108" /note="pyruvate dehydrogenase E1 component subunit alpha, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 Proteins" /db_xref="GeneID:106087108" CDS 144..1343 /gene="LOC106087108" /codon_start=1 /product="pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X2" /protein_id="XP_013107483.1" /db_xref="GeneID:106087108" /translation="MLRQLNRAGEFPKVVKQLQKSSAVAGTQKSNNYATEATVQVQRP YKLHRLDQGPETTVKITKDQALTYYTQMQTIRRLETSAGNLYKEKIIRGFCHLYSGQE ACAVGMRAAMRDVDNIISAYRVHGWTYLMGVSPLGVLAELTGRQSGCAKGKGGSMHMY CPNFYGGNGIVGAQVPLGAGVALACKYKGNGGMCLALYGDGAANQGQVFEAYNMAYLW KLPVIFVCENNNYGMGTSAERASSNTDYYTRGDALPGIWVDGMDVLAVRSATEFAIDY VNKNGPLVMETNTYRYSGHSMSDPGTSYRTREEIQEVRQKRDPITSFKEMCIEQGLIT TDEVKAIDTKVRKEVDEATAQAKADAELPLSGLWTDVYSQCLEPKIRNCVEHNIKHVQ QNKGANH" misc_feature 243..1316 /gene="LOC106087108" /note="Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and...; Region: TPP_enzymes; cl01629" /db_xref="CDD:470272" misc_feature order(417..419,573..575,648..653,744..746,750..761, 768..770,780..782,792..794,837..848,888..890,1038..1040, 1050..1052) /gene="LOC106087108" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:238958" misc_feature order(507..512,648..650,654..656,738..749,828..830, 834..836,1026..1028) /gene="LOC106087108" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:238958" misc_feature order(633..635,639..641,645..647,660..662,669..674, 681..686,690..695,702..704,759..764,780..785,792..794) /gene="LOC106087108" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:238958" misc_feature order(1011..1031,1035..1067,1092..1100) /gene="LOC106087108" /note="phosphorylation loop region [posttranslational modification]" /db_xref="CDD:238958" polyA_site 1770 /gene="LOC106087108" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttttgacagt tttcgagtcg tgtgtttgtt acgcgaccga ccacagagag atttgcaaat 61 aaaacgaatt ttccagggat ccttgtgaaa aactccacca taaaacgcct catattataa 121 aatttattga gtattgtgaa aaaatgttgc gtcaattaaa tcgagccggt gaattcccca 181 aagttgtcaa acaattgcaa aaaagttcag ctgtagccgg aacacaaaaa tccaataact 241 atgcgaccga ggcaactgtt caagtgcaac ggccttacaa attgcatcgt ttggaccaag 301 gacccgaaac cacagtaaaa atcaccaaag atcaagctct tacatactac actcaaatgc 361 aaaccatccg ccgtttggaa acatctgctg gtaatttgta caaagagaaa atcatcagag 421 gcttttgtca tttgtactcg ggtcaggaag cctgtgctgt gggcatgaga gccgctatgc 481 gtgatgtgga caatattatt tctgcctatc gtgttcatgg ctggacctat ctgatgggtg 541 tttcaccttt gggtgttttg gctgagttaa caggacgtca aagtggttgt gccaaaggca 601 agggaggttc tatgcacatg tattgtccca atttctatgg tggcaatggc attgtgggag 661 ctcaggttcc tttgggcgct ggagttgcct tggcctgcaa atacaaaggc aatggtggca 721 tgtgcctagc cttgtatggt gatggtgctg ccaatcaagg tcaagtgttt gaagcctaca 781 acatggccta tttgtggaaa ttgcctgtta ttttcgtttg cgaaaacaac aattatggca 841 tgggcactag cgcagaacgt gcttcctcca acaccgacta ttataccaga ggcgatgctt 901 tgcccggcat ctgggtagat ggcatggatg ttttggctgt tcgcagtgcc acagaattcg 961 ccattgatta tgtcaacaaa aatggacctt tggtcatgga aaccaacact tatcgttatt 1021 ctggccattc catgtccgat cccggtacca gctatcgtac ccgcgaagaa attcaagaag 1081 tacgccaaaa gcgtgatccc attacctcat ttaaggagat gtgcattgaa cagggtctca 1141 ttaccaccga cgaagtcaag gccattgaca ccaaagtacg caaagaggtc gatgaagcca 1201 ctgcccaggc taaagccgat gccgaactgc ctctcagcgg tttgtggacc gatgtctact 1261 cccagtgctt ggaacccaaa ataagaaatt gtgtggaaca caacattaaa catgttcaac 1321 aaaacaaagg cgcaaatcat taacgaacta tgagccattc taactttgct gcctccaagg 1381 agggaatgtt tactcagcct tccttcttaa tgattaactc attgttcata agttactcag 1441 ttttgttaat acgtttttct tttgcattgg aagagaactc tggataaagg ctcatttagg 1501 agagataatt tccattaatt tattaaaacc caatctatat aaatctcaag tttaaagcga 1561 cacacgaaaa aaatcttaaa attgttttgc ttaattttta tgtaaattat ttttgattaa 1621 aatcaacatc acacacattc ttttttaaga caagatagta aaacacaagt ctgtaacaag 1681 agactacaaa ataaatacaa atatgtaaac tgttataaat ataaatagac aaaataaaga 1741 ccatcgtaga aaaattccac aaaaactgaa