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LOCUS XM_013252016 4337 bp mRNA linear INV 02-SEP-2023 subunit RPC1 (LOC106087100), mRNA. ACCESSION XM_013252016 VERSION XM_013252016.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013252016.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4337 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4337 /gene="LOC106087100" /note="DNA-directed RNA polymerase III subunit RPC1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:106087100" CDS 116..4249 /gene="LOC106087100" /codon_start=1 /product="DNA-directed RNA polymerase III subunit RPC1" /protein_id="XP_013107470.1" /db_xref="GeneID:106087100" /translation="MPKEQFREADLIKKISHVQFSISSPEEIQQESQLRIVSKNLYQA QRQPVPYGVLDRRMGVSSKDSTCETCGQGLNECIGHFGYLDLSLPVFHIGHFRSTINI LQMICKSCSHVMLKDVDKKMYEKKLLNPNFSYLAKKALHGQILAKAKKSTKCPNCEAI NGGVKKGPGLLKILHDPYKGKKQESLMSKDLDDLLQATENNRELNQMLGSYNHMEELN PLTVLELFKSIPKPDIPLLGMTCEGANPANLIVTRVFVPPVCIRPSVVSEVKAGTTED DLTMKQSEILLINDVIQKHMSGGGKIELIQEDWDFLQLHVALYFHSEISGIPLNMAPK KTTRGLVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLMIHQVGVPERVAKILTYP ERVNPANIQKMKDLVKNGPNVHPGANYVQQRGSTFKKYLAYGNRDKVAHDLKCGDIVE RHLCDGDIVLFNRQPSLHKMSIMCHQAKVQPQRTFRFNECACTPYNADFDGDEMNLHL PQTEEARAEALILMGNKSNLVTPKNGEILIAATQDFITGGYLLTQKDEFLTREQAMQL AACFLAGPDANMQIDMPPPAILKPRKLWTGKQIFSLLLKPNKQCPVKVNLITKGRNYT SNYDLCVKDSWVIVRNSELICGSMDKSTMGSGTKNCIFYVILRDFGETYATKCMWRLA RIASYFIQNRGFSFGISDVTPSAKLLVEKQRLLEKGYAKCDEYILEMKKGTLQCQPGC TPEQTLEAVMLRELSGIREQAAKACFRELHPTNSALIMALSGSKGSNINISQMIACVG QQAINGKRVPNGFENRALPHFEKFSAIPAARGFVQNSFFSGLTPTEFFFHTMAGREGL VDTAVKTAETGYLQRRLVKCLEDLVVHYDGSVRNAIGEIVELIYGGDGLDPVFMEIKN KPVDMVRQLNHLRACWPYREQEPLPAKKIVDTTKNILKEEEFTMSRQDFQNEVVSFIE KVSEKITKVQEKYRDHPKLGNEIERLTEGQIRTFMRWVNDKYNRAVTEPGTAVGAVAA QSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTPVITAEIVNNTSME YARKVKSRIEKTTLGEVSSYIEEVYKQDDCYLVIRLDLNRIKVLGLEINSETIRYSIC TSKLRIKPALVDIMGSSIIIVRIDSSKHGAALNAELQRLSSAIQNVVVAGLPHISRAV IAIDDSRLPATYKLCIEGAGLRDVMATYGVVGTKTKSNNIWEVYNTLGIEAARTTIMT EITDVMEGHGMSVDHRHIMLLASQMTSRGEVLGITRHGLAKMRESVFNLASFEKTSDH LFDAAYFGQTDAVDGVSERIILGMPAAIGTGLFKLVHNHENTELPEIQPPIFSSVAA" misc_feature 185..2782 /gene="LOC106087100" /note="Largest subunit (RPC1) of eukaryotic RNA polymerase III (RNAP III), N-terminal domain; Region: RNAP_III_RPC1_N; cd02583" /db_xref="CDD:259847" misc_feature order(314..316,323..325,344..346,353..355) /gene="LOC106087100" /note="Zn-binding [ion binding]; other site" /db_xref="CDD:259847" misc_feature order(1154..1156,1169..1171,1190..1192,1208..1210) /gene="LOC106087100" /note="putative active site region [active]" /db_xref="CDD:259847" misc_feature 3026..>3241 /gene="LOC106087100" /note="DNA-directed RNA polymerase subunit A''; Provisional; Region: PRK14898" /db_xref="CDD:237854" misc_feature 3152..4174 /gene="LOC106087100" /note="Largest subunit (Rpc1) of Eukaryotic RNA polymerase III (RNAP III), C-terminal domain; Region: RNAP_III_Rpc1_C; cd02736" /db_xref="CDD:132723" misc_feature order(3158..3163,3173..3175,3182..3184,4163..4165, 4172..4174) /gene="LOC106087100" /note="Rpb1 (Rpc1) - Rpb6 interaction site [polypeptide binding]; other site" /db_xref="CDD:132723" misc_feature order(3173..3358,3371..3415,3701..3736,3761..3922, 3929..4027,4034..4036) /gene="LOC106087100" /note="cleft [active]" /db_xref="CDD:132723" misc_feature order(3185..3187,3194..3196,4079..4081,4109..4117, 4133..4138,4142..4144,4148..4150,4163..4165) /gene="LOC106087100" /note="Rpb1 (Rpc1) - Rpb2 (Rpc2) interaction site [polypeptide binding]; other site" /db_xref="CDD:132723" misc_feature order(3320..3322,4007..4009,4058..4063,4070..4072) /gene="LOC106087100" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:132723" misc_feature order(3803..3805,3821..3826,3830..3832,3860..3880, 3884..3886,3944..3946,3977..3982,3986..3988) /gene="LOC106087100" /note="Rpb1 (Rpc1) - Rpb5 interaction site [polypeptide binding]; other site" /db_xref="CDD:132723" misc_feature 4034..4159 /gene="LOC106087100" /note="clamp [active]" /db_xref="CDD:132723" polyA_site 4337 /gene="LOC106087100" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcgaaattgc aacaaacctg aaaacacgct ttcctgcctc aaattttatt tattcaatcg 61 ataaatgatt taattttcaa ttaaattgtg aaatcattca ttaaacttta acaatatgcc 121 caaggaacag tttcgtgagg ctgacctcat aaagaaaata tcacatgtgc agttcagcat 181 cagcagtccc gaagaaattc aacaggagtc tcaattgcgt attgtgtcca agaatttata 241 tcaagctcaa cgacaacctg ttccatatgg cgttttggat cgtcgcatgg gtgttagcag 301 caaagattcc acttgtgaga cttgtggaca aggcctgaat gagtgcatag ggcattttgg 361 ttatttggat ctctcattgc ccgtatttca cataggacat ttccgttcca ccattaatat 421 attgcaaatg atatgtaaat cgtgttcaca tgtcatgctt aaagatgttg acaagaaaat 481 gtatgagaaa aagctattga atcccaactt cagttatttg gccaaaaagg ctttgcatgg 541 acaaattttg gccaaagcca agaagtctac aaaatgtcca aactgtgaag ccattaatgg 601 aggagtgaaa aaaggaccgg gtctattgaa aattcttcat gatccctata aaggcaaaaa 661 gcaggaatcg ttaatgtcta aggatctgga cgatttattg caggccaccg aaaacaatag 721 agaattaaat caaatgcttg gcagttataa tcatatggaa gaattgaatc cacttacagt 781 cttggaatta tttaagagta taccaaaacc ggatataccc ttgttgggta tgacctgtga 841 gggagcaaat cctgctaatc tgatagtgac tagagttttt gtgccgccag tgtgcataag 901 accctctgtg gtgtccgaag tcaaggcggg aaccaccgaa gatgacttga ccatgaaaca 961 aagtgaaatt ctgcttatta acgatgtcat acaaaaacac atgagcggcg gtggtaaaat 1021 tgaactcatt caggaagatt gggatttctt gcaattgcat gtggccttat attttcacag 1081 tgaaatttcc ggcattcctt tgaatatggc cccgaaaaag accacacgag ggctggtgca 1141 acgtctaaaa ggcaaacagg gcagatttcg cggtaatctc tctggaaagc gtgtagattt 1201 ctcaggccgt actgttatct ctcccgatcc taatttgatg atacaccaag tgggggtgcc 1261 tgagagagta gctaaaatac taacttatcc cgagagagtg aatccagcca atatacaaaa 1321 aatgaaggat ttggttaaaa atggacccaa tgttcatcca ggtgcaaatt atgttcagca 1381 gcgtggttct acctttaaga aatacttggc ctatggcaat cgtgataagg tggcgcatga 1441 tttaaaatgt ggagacatag tagaacgtca tctttgtgat ggcgatattg tgctctttaa 1501 tcgccaacct tctttgcata aaatgtccat tatgtgtcat caagccaagg tacagcccca 1561 aagaactttc agattcaatg agtgtgcctg tacaccctat aatgctgatt ttgatggtga 1621 tgaaatgaat ttacatttac cccaaaccga agaggccaga gctgaagcct taatattgat 1681 gggcaataaa tccaatttgg ttactccaaa aaatggtgaa attcttattg cggccacaca 1741 agattttata acaggtggct atttgctaac acaaaaggat gaatttctaa ccagggaaca 1801 ggccatgcaa ttggctgctt gctttttggc agggcccgat gcaaatatgc agattgatat 1861 gccgccacca gccatcttaa agccacgtaa attatggaca ggaaaacaga tattcagtct 1921 actgctgaaa cccaataaac aatgtccagt gaaagtaaat ctcataacca aaggaagaaa 1981 ttacaccagc aactacgatt tatgtgttaa ggattcatgg gttattgtaa gaaactccga 2041 gttaatatgt ggctctatgg ataaaagcac tatggggtct ggcacaaaaa attgtatttt 2101 ctatgtcata ttgagagact ttggcgaaac gtatgccacc aaatgcatgt ggcgtctggc 2161 aaggattgcc tcatatttca tacaaaatcg tggtttctct tttggcataa gtgatgttac 2221 acccagtgct aagcttttgg tagaaaaaca acgtcttcta gagaaaggct atgccaaatg 2281 cgatgaatat attttggaaa tgaaaaaggg taccttgcaa tgccaacctg gttgtacccc 2341 cgaacaaaca ttggaagctg ttatgctgcg agaattgtcc ggtattcgag aacaggcagc 2401 taaggcttgt ttccgtgaac tgcatcccac caacagtgcg ttgataatgg ctctgtcggg 2461 ttccaaagga tccaacatta atatatcaca aatgattgcg tgtgtggggc aacaagctat 2521 caatggcaaa cgtgtgccaa atggttttga aaatcgagct ttgccacatt ttgaaaagtt 2581 ttctgccatt cctgctgcaa gaggttttgt acagaatagc ttcttttctg gtctaacacc 2641 caccgagttc tttttccata ccatggctgg tagagaaggt ctggtagata cagctgtaaa 2701 aactgccgaa actggttatc tacagagacg tttagtcaag tgtttggaag atttggtggt 2761 ccattatgat ggttcggtgc gcaacgccat tggtgaaatc gttgaactta tctacggtgg 2821 cgatggcttg gatccagttt ttatggaaat aaaaaataaa cctgtggata tggtgcgaca 2881 gttgaatcat ttaagagctt gttggcctta tcgcgagcag gagcccttgc cggccaagaa 2941 aattgtggat accactaaaa atatactaaa agaagaggag tttaccatga gccggcaaga 3001 tttccaaaat gaagttgtct cattcatcga aaaagtttcc gagaaaataa ccaaagttca 3061 agaaaaatat agggaccatc caaaactggg caatgagatt gaacgtttaa ccgaaggtca 3121 aatacgtacc ttcatgcgtt gggttaatga caaatacaat cgggcagtca ccgaacctgg 3181 tacggcagta ggtgctgtgg cagctcaaag tattggcgaa cctggcacac aaatgacact 3241 gaaaactttc cattttgctg gtgtagcctc catgaacatt acccagggtg tgccacgtat 3301 tgtggaaatc attaatgcca ccaagaccat atcgactccg gttataacag ctgaaatagt 3361 caacaacacc agcatggagt atgccagaaa agtaaaatcg cgcatagaaa agaccacatt 3421 aggcgaagtc tcatcgtaca ttgaggaagt gtacaaacag gacgattgtt atctggtaat 3481 acgtttggat ttgaatcgta tcaaagtttt gggcttggag attaactcgg agaccattcg 3541 atattctata tgcacttcca agttacgcat taaacctgcc ctggtggaca ttatgggttc 3601 ctcaattatc atagtacgca ttgacagttc gaagcatggt gccgccttga atgccgaact 3661 tcaacgttta tcatcggcca tacaaaatgt tgtggtagct ggtctacctc atatatcaag 3721 agctgtcata gccattgatg attcccgctt accggccacc tataaattgt gtattgaagg 3781 tgctggtcta agagatgtaa tggccaccta tggtgtggtg ggtaccaaaa caaaaagcaa 3841 caacatttgg gaggtctaca atacgctagg cattgaggcg gctcgcacca ccataatgac 3901 agaaatcaca gatgtcatgg agggccatgg catgagtgtg gatcatcgtc atataatgct 3961 gttggccagt cagatgactt cgcgtggtga agttttgggc ataacacgcc atggcttggc 4021 caaaatgcga gaaagtgttt ttaatttggc ttcgtttgag aagacctcag atcatttatt 4081 cgatgcggcc tattttggac aaaccgatgc agtagatggt gtttcggaac gtattatttt 4141 gggaatgcct gctgccatag gcactgggct ttttaaattg gtgcacaatc atgagaatac 4201 cgaattgcct gaaatacaac caccaatttt ctcttcggtg gcggcgtaat gataagaatg 4261 attgtttttt ttacttctta gcacaagcaa tgaaaaaaaa aaaaaaataa atcacttggt 4321 tggctaattt cccataa