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LOCUS XM_013249887 4311 bp mRNA linear INV 02-SEP-2023 (LOC106085572), transcript variant X2, mRNA. ACCESSION XM_013249887 VERSION XM_013249887.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013249887.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4311 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4311 /gene="LOC106085572" /note="ras GTPase-activating protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:106085572" CDS 1114..4062 /gene="LOC106085572" /codon_start=1 /product="ras GTPase-activating protein 1 isoform X2" /protein_id="XP_013105341.1" /db_xref="GeneID:106085572" /translation="MFLHSFKSAFSTASSSSSSNTSLLMDTSTVDQLMRYRNSTGNAN TTPSIKTSATSGAHVEALIAHAEDDDEHDDHHLLTDLDNVDAIINYVIKMQYICSERP AIIAPPESEWYHGRLDRYSAESRLRGSSKVGSYLVRESDRKPGSYVLSYFGRTGINHF RITAVCGDFYIGGRQFISLSDLVGYYTSCSDLLKRERLVFPVPPPEPVNDKKRVVAIL PYTKMPDTDELSFQKGDIFFVHNDMGDGWLWVTAHRTGEQGMIFRELVEDLDPAIDPN TVFPWFHPNCTKNEAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKG VRYLMGGRTFECLDAVINRYRKEQIVEGHCLSHPVVNGTQPEYSQQYVVEKAAEKIYA TLRECRDQIGLKKIKGIKHHGHLNKKSDKTAKWKQLYFALISECSETHLCFYDNPKKT KPKGLIDLSCAYLYQCHDSLWERPYCFQIVERALPCLATVTYLCAPSQESYVEWINAL KAQCASQLSKAQKKVPRLRELRSLTLHILEAHRLPFKLVPHPYCSISLNQVKVGKTKV KIAPDPVWEEEFVLDDVPPDVVSLTITLISRGKRGKDSEVAELTIDLASLKNGHETEE WYQLTGMTPMGEWGSLRLRMRYLDDLIMPCEEYSPLQQLLLEPELYSVKALAELCHND RVPLATSLLRVFRHEKRETELIRVLCQAEIARENETTTLFRGASLATTLMDLYMRTEC TGFLQAAISETIQRIMDSKQSAELNPTKMDVNDDACSNAEFLLQILDLVTHSIFTSPE ACPRSVRFICNCLQKAVVAKWPTERLVRTRVVSGFIFLRLLCPSLLNPRQFGLVNETP PAAATRSLVMVAKCLQNLANLIEFGGKEQYMEVVNPFILKNKERMIVFLDQLSMVTDP NPPPGWNSEQSSNQSPQDTGRELATLHHICVSYLPELQELSNILSIKKLVTVTDMLTK HKLKYREMIS" misc_feature 1411..1695 /gene="LOC106085572" /note="N-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP); Region: SH2_Nterm_RasGAP; cd10353" /db_xref="CDD:198216" misc_feature order(1468..1470,1525..1527,1588..1590,1594..1596) /gene="LOC106085572" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198216" misc_feature order(1591..1593,1669..1671) /gene="LOC106085572" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198216" misc_feature 1744..1920 /gene="LOC106085572" /note="Src Homology 3 domain of Ras GTPase-Activating Protein 1; Region: SH3_RasGAP; cd11788" /db_xref="CDD:212722" misc_feature 1951..2175 /gene="LOC106085572" /note="C-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP); Region: SH2_Cterm_RasGAP; cd10354" /db_xref="CDD:198217" misc_feature order(1975..1977,2029..2031,2092..2094,2098..2100) /gene="LOC106085572" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198217" misc_feature order(2095..2097,2173..2175) /gene="LOC106085572" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198217" misc_feature 2332..2649 /gene="LOC106085572" /note="RAS p21 protein activator (GTPase activating protein) 1 Pleckstrin homology (PH) domain; Region: PH_RASA1; cd13260" /db_xref="CDD:270080" misc_feature 2692..3063 /gene="LOC106085572" /note="C2 domain present in RAS p21 protein activator 1 (RasA1); Region: C2_Ras_p21A1; cd08400" /db_xref="CDD:176045" misc_feature 3055..4059 /gene="LOC106085572" /note="Ras GTPase Activating Domain; Region: RasGAP; cl02569" /db_xref="CDD:470620" misc_feature order(3160..3162,3268..3270,3274..3276,3280..3285, 3289..3291,3298..3300,3310..3312,3595..3597,3619..3624, 3631..3636,3643..3645,3706..3708,3715..3720,3727..3729, 3739..3741,3745..3747,3760..3765) /gene="LOC106085572" /note="RAS interface [polypeptide binding]; other site" /db_xref="CDD:213340" polyA_site 4311 /gene="LOC106085572" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttcccattac ccactatact tgcctcgtat gttcactctc ttttactctc ataacggggc 61 cttttttgtt ttttctttcg tttttgttga tgattatgct gagagatgta cctatcgcgc 121 tgtcgtaacg tagatagcta acaaacgact gaaaaacaca gcggcacaat gttgtttgat 181 ttttgagcgg cttttgcttg cctgcctgct ggcttgtgcg ttatttgttg cattttgaac 241 aatttctatt ttattaataa ttttgttgtg attgcgcgca cacacaaatt acgcgaacgc 301 ggaaagaggc gctctgtatt ttcgaaaata ttaataaagt gcggaatacc aacacggtgt 361 gtgacgagtg agttgttatt gtgtatggtg tgtaaagagg agtttcgccg ccttgtcgtg 421 agctgtcatt tgccaccata gttcgtatat ttgttgttgt acaaagttgt gtgcctcgct 481 atttggtgtt tgttgtattt tgtgttaagt gttttgtgtt tcctttttcc tatgaagacg 541 ggggccttgc caccgtcgtc gttgtccata acaccaaaaa caaatttcgt cgtagttgtc 601 gtcgtcgtcg tcaattccat gaaattcata attaaattaa aaaatcatta aacaaccaaa 661 aaaaaaggaa caacgaaaaa atattctaaa aagaaaccca gaccattagt cagaagaata 721 actacagtgt aactgcctgg ctgcctctag gcaagagggc attgatcatg agtttgtgat 781 aaatatagta aaacgaaaca aaaatacaaa ataaaactaa gaaattactt attaccaaag 841 aattataagt ttcataaaaa tagaaactaa tcgtatacat aacgccaatt aaattctatt 901 actgccattt gaaaacaacc tacggccccg gcggcctttg attgtgtggt tggctgtgtg 961 cacaagttaa ttataaccgt taaaattcaa atttgaattt cctgtcttcc gctgacaacc 1021 aaaaccaaag aaatcccaag tttcccttta ccattactgt tactgttacc tgtaaaagca 1081 acatctaaag atatatatca cccgcccgcc atcatgtttc tgcatagttt taaatctgca 1141 ttttccacgg cttcatcttc atcatcgtcc aacacctcat tacttatgga cacctccaca 1201 gttgaccaat tgatgcgtta tcgcaatagc accggtaacg ctaacaccac tccctccatc 1261 aaaacctcgg cgacaagtgg agctcatgtt gaggctctga ttgcccatgc cgaagatgat 1321 gatgaacatg atgatcatca tctgttgacc gatttggata atgtcgatgc cattatcaat 1381 tatgtgatta aaatgcaata catttgtagc gaacgacctg ccattatagc gccaccagaa 1441 agtgaatggt atcatggacg tttggatcgc tattcggctg aatcacgttt acgtggaagc 1501 agcaaagtgg gaagctattt ggttcgcgaa agtgatcgca aacccggttc ttatgtactc 1561 agctattttg gccgtactgg cattaatcat ttccggatta ccgccgtttg tggtgatttc 1621 tacattggcg gtcgtcaatt catctcactc agcgatttag tgggttacta cacctcatgc 1681 agtgatctgc taaagcgtga acgtctggtc tttccggtgc caccgccaga gcctgtaaat 1741 gataaaaagc gagtggtggc catattgccc tacaccaaaa tgcccgacac cgatgaattg 1801 agcttccaaa aaggagatat cttttttgtg cacaatgaca tgggcgatgg ttggttgtgg 1861 gtaaccgctc atcgtactgg ggaacagggt atgatatttc gtgagctggt ggaagatttg 1921 gatcctgcca tagatcccaa tacagtattt ccatggtttc atcctaactg caccaaaaac 1981 gaagctgttg atatgttagt aaaggctggt cctggtagtt ttttggtacg ccccagtgac 2041 aactcacctg gcgactattc actatttttc catatcaaca atcaaataca acgttttcgc 2101 attgaaaaga agggtgtgcg ctacctcatg ggaggccgca cattcgagtg tctggatgct 2161 gttatcaatc gctatcgcaa ggaacagatt gtcgaaggcc attgccttag tcatccggta 2221 gtgaatggca ctcaacccga atacagccaa cagtatgtgg tggagaaggc tgccgaaaag 2281 atctatgcga ctctgagaga atgtcgcgat caaatcggtc ttaagaaaat caaaggcata 2341 aaacaccatg gtcacctcaa taagaagtcc gacaagactg ccaaatggaa gcagttgtac 2401 tttgccttga tcagtgaatg ttccgagacg catttgtgct tctatgacaa tcccaaaaag 2461 actaaaccca aaggtctcat tgatctttcg tgtgcttatc tctatcaatg ccatgattca 2521 ttgtgggagc gtccctattg ttttcaaatt gtggaaaggg ctttgccctg tttggccacg 2581 gtaacctatc tgtgtgcgcc tagtcaagag agttatgtgg aatggataaa tgcactgaaa 2641 gcacagtgtg cctcccagct gagcaaagca caaaagaagg tgccgcgttt gagggagcta 2701 cgcagcctca ctttgcatat tttagaagct catagactgc catttaaatt agtgccacat 2761 ccctattgta gtatttcact gaaccaagtc aaagtgggca agaccaaggt gaagatagcg 2821 cccgatccag tgtgggagga agagtttgtt ctggatgatg tccccccaga tgtagtctct 2881 ctaaccataa cccttatatc tcgcggcaaa cgtggcaagg acagtgaggt ggccgagttg 2941 accattgatt tggccagctt gaagaatggc catgagaccg aagaatggta tcaactcacc 3001 ggcatgactc ccatgggtga atggggttcc ctgcgtttac gtatgcgtta tttagatgat 3061 ctcattatgc catgtgaaga atatagtcca ctgcagcagc tgctgcttga acccgagctg 3121 tactctgtca aggctttggc cgaactctgc cacaatgatc gtgtgccgct ggccacctcc 3181 ttgttgcgtg tcttccgcca tgagaaacgt gaaaccgagc tgatacgtgt cctatgccaa 3241 gcggaaatag cgcgagaaaa tgaaaccacc actttattcc gtggtgccag tctggccact 3301 accctaatgg atttgtatat gcgcacagaa tgtacgggtt tcctacaagc ggccatttcg 3361 gagaccatac aacgtattat ggatagcaaa caatcggctg aattgaatcc cacaaaaatg 3421 gatgttaacg atgatgcctg ctctaatgct gagttccttt tgcaaattct cgatttggtg 3481 acacattcga tattcacctc acccgaggcc tgtccacgtt cggtgcgttt tatatgtaat 3541 tgcttgcaaa aggctgtggt ggccaaatgg cccacagaac gtttggtgag gactcgtgtg 3601 gtgtcaggct tcattttctt gcgtttgttg tgtccctcgt tgctgaatcc acgtcaattt 3661 ggtttggtca atgagacccc accggcagcg gctacgagat ctttggttat ggtggcaaag 3721 tgcttgcaga acttggcgaa tttaatcgaa ttcggtggga aggagcaata catggaggta 3781 gtcaatccct ttatactcaa aaataaagaa cgcatgatag tctttctcga tcaattatcc 3841 atggtgacag atcctaatcc acctccaggt tggaattctg aacaaagctc caatcaatct 3901 cctcaagata cgggtcgtga acttgcaaca ttgcatcata tatgtgtttc atatttaccg 3961 gaattgcaag aattgtcaaa tatactctca attaagaaat tagttactgt taccgatatg 4021 cttacaaaac ataaacttaa atatcgtgaa atgattagtt aagctaaaca atgaaatgaa 4081 actaatcata atgatgaaga agaacacaca cacacaaaca caaatagaac gcaacaagaa 4141 cgagaacatt tataatacgc tacaagccaa gtaacaagaa aggaacaaaa caaatacaca 4201 aacatacata catacataca tatgaagaaa gacatttaac tgccataatg atgatgaaga 4261 taaaggatat acatatatgt ggctaaaatt gaaaaataga tatcactgga a