Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_013249882 3599 bp mRNA linear INV 02-SEP-2023 (LOC106085572), transcript variant X1, mRNA. ACCESSION XM_013249882 VERSION XM_013249882.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013249882.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3599 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3599 /gene="LOC106085572" /note="ras GTPase-activating protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:106085572" CDS 399..3350 /gene="LOC106085572" /codon_start=1 /product="ras GTPase-activating protein 1 isoform X1" /protein_id="XP_013105336.1" /db_xref="GeneID:106085572" /translation="MQSLQKQLRDWPKRLSVTLGDLMRLGNVDVVIQKDKLGSPIGGS DDGNLAAFGGGINNFVGGMNTAAVGGGGGGGVAFDMGDLQQELDQDEFDGMNLINGER PAIIAPPESEWYHGRLDRYSAESRLRGSSKVGSYLVRESDRKPGSYVLSYFGRTGINH FRITAVCGDFYIGGRQFISLSDLVGYYTSCSDLLKRERLVFPVPPPEPVNDKKRVVAI LPYTKMPDTDELSFQKGDIFFVHNDMGDGWLWVTAHRTGEQGMIFRELVEDLDPAIDP NTVFPWFHPNCTKNEAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK GVRYLMGGRTFECLDAVINRYRKEQIVEGHCLSHPVVNGTQPEYSQQYVVEKAAEKIY ATLRECRDQIGLKKIKGIKHHGHLNKKSDKTAKWKQLYFALISECSETHLCFYDNPKK TKPKGLIDLSCAYLYQCHDSLWERPYCFQIVERALPCLATVTYLCAPSQESYVEWINA LKAQCASQLSKAQKKVPRLRELRSLTLHILEAHRLPFKLVPHPYCSISLNQVKVGKTK VKIAPDPVWEEEFVLDDVPPDVVSLTITLISRGKRGKDSEVAELTIDLASLKNGHETE EWYQLTGMTPMGEWGSLRLRMRYLDDLIMPCEEYSPLQQLLLEPELYSVKALAELCHN DRVPLATSLLRVFRHEKRETELIRVLCQAEIARENETTTLFRGASLATTLMDLYMRTE CTGFLQAAISETIQRIMDSKQSAELNPTKMDVNDDACSNAEFLLQILDLVTHSIFTSP EACPRSVRFICNCLQKAVVAKWPTERLVRTRVVSGFIFLRLLCPSLLNPRQFGLVNET PPAAATRSLVMVAKCLQNLANLIEFGGKEQYMEVVNPFILKNKERMIVFLDQLSMVTD PNPPPGWNSEQSSNQSPQDTGRELATLHHICVSYLPELQELSNILSIKKLVTVTDMLT KHKLKYREMIS" misc_feature 675..983 /gene="LOC106085572" /note="N-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP); Region: SH2_Nterm_RasGAP; cd10353" /db_xref="CDD:198216" misc_feature order(756..758,813..815,876..878,882..884) /gene="LOC106085572" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198216" misc_feature order(879..881,957..959) /gene="LOC106085572" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198216" misc_feature 1032..1208 /gene="LOC106085572" /note="Src Homology 3 domain of Ras GTPase-Activating Protein 1; Region: SH3_RasGAP; cd11788" /db_xref="CDD:212722" misc_feature 1239..1463 /gene="LOC106085572" /note="C-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP); Region: SH2_Cterm_RasGAP; cd10354" /db_xref="CDD:198217" misc_feature order(1263..1265,1317..1319,1380..1382,1386..1388) /gene="LOC106085572" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198217" misc_feature order(1383..1385,1461..1463) /gene="LOC106085572" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198217" misc_feature 1620..1937 /gene="LOC106085572" /note="RAS p21 protein activator (GTPase activating protein) 1 Pleckstrin homology (PH) domain; Region: PH_RASA1; cd13260" /db_xref="CDD:270080" misc_feature 1980..2351 /gene="LOC106085572" /note="C2 domain present in RAS p21 protein activator 1 (RasA1); Region: C2_Ras_p21A1; cd08400" /db_xref="CDD:176045" misc_feature 2343..3347 /gene="LOC106085572" /note="Ras GTPase Activating Domain; Region: RasGAP; cl02569" /db_xref="CDD:470620" misc_feature order(2448..2450,2556..2558,2562..2564,2568..2573, 2577..2579,2586..2588,2598..2600,2883..2885,2907..2912, 2919..2924,2931..2933,2994..2996,3003..3008,3015..3017, 3027..3029,3033..3035,3048..3053) /gene="LOC106085572" /note="RAS interface [polypeptide binding]; other site" /db_xref="CDD:213340" polyA_site 3599 /gene="LOC106085572" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caatcaaagt gtgaagtaaa gtgaagaact gaaaattaaa attaagtgtt taagtgttta 61 ttgagaataa gacaaagtac aaatacttcg aaacaagttt gtattgatgt attgaagatt 121 ataagattga agatataaga ttattattgc gaaaagctgt ggctaatttt gtctttggct 181 ggtcggacgt cgacgtcggt cggtcggtct tttgtgtttc gtgttttgta tatcttcata 241 gataaaaaat atgtgaatgc gaaaaaagaa taaataataa ttgaaaaata ataaaaaaag 301 ctgtgagtgc tacaaatgaa aataaaaaag attttatgaa aacagcaccc aaatcaaaga 361 aggaattatt ttgtggggtt tgattaaatg ttggtcctat gcaaagttta caaaaacaat 421 taagggattg gccaaaacgc ttatcggtga cacttggaga tttgatgcgc ctgggcaacg 481 tggatgttgt catacaaaag gacaagcttg gttcaccgat tggcggctcg gatgatggta 541 atttagctgc atttggggga ggcattaata attttgttgg tggcatgaac acggctgctg 601 ttggtggtgg aggtggcggc ggtgttgcct tcgatatggg cgatttgcaa caggaattgg 661 atcaagatga attcgatgga atgaatttga ttaatggcga acgacctgcc attatagcgc 721 caccagaaag tgaatggtat catggacgtt tggatcgcta ttcggctgaa tcacgtttac 781 gtggaagcag caaagtggga agctatttgg ttcgcgaaag tgatcgcaaa cccggttctt 841 atgtactcag ctattttggc cgtactggca ttaatcattt ccggattacc gccgtttgtg 901 gtgatttcta cattggcggt cgtcaattca tctcactcag cgatttagtg ggttactaca 961 cctcatgcag tgatctgcta aagcgtgaac gtctggtctt tccggtgcca ccgccagagc 1021 ctgtaaatga taaaaagcga gtggtggcca tattgcccta caccaaaatg cccgacaccg 1081 atgaattgag cttccaaaaa ggagatatct tttttgtgca caatgacatg ggcgatggtt 1141 ggttgtgggt aaccgctcat cgtactgggg aacagggtat gatatttcgt gagctggtgg 1201 aagatttgga tcctgccata gatcccaata cagtatttcc atggtttcat cctaactgca 1261 ccaaaaacga agctgttgat atgttagtaa aggctggtcc tggtagtttt ttggtacgcc 1321 ccagtgacaa ctcacctggc gactattcac tatttttcca tatcaacaat caaatacaac 1381 gttttcgcat tgaaaagaag ggtgtgcgct acctcatggg aggccgcaca ttcgagtgtc 1441 tggatgctgt tatcaatcgc tatcgcaagg aacagattgt cgaaggccat tgccttagtc 1501 atccggtagt gaatggcact caacccgaat acagccaaca gtatgtggtg gagaaggctg 1561 ccgaaaagat ctatgcgact ctgagagaat gtcgcgatca aatcggtctt aagaaaatca 1621 aaggcataaa acaccatggt cacctcaata agaagtccga caagactgcc aaatggaagc 1681 agttgtactt tgccttgatc agtgaatgtt ccgagacgca tttgtgcttc tatgacaatc 1741 ccaaaaagac taaacccaaa ggtctcattg atctttcgtg tgcttatctc tatcaatgcc 1801 atgattcatt gtgggagcgt ccctattgtt ttcaaattgt ggaaagggct ttgccctgtt 1861 tggccacggt aacctatctg tgtgcgccta gtcaagagag ttatgtggaa tggataaatg 1921 cactgaaagc acagtgtgcc tcccagctga gcaaagcaca aaagaaggtg ccgcgtttga 1981 gggagctacg cagcctcact ttgcatattt tagaagctca tagactgcca tttaaattag 2041 tgccacatcc ctattgtagt atttcactga accaagtcaa agtgggcaag accaaggtga 2101 agatagcgcc cgatccagtg tgggaggaag agtttgttct ggatgatgtc cccccagatg 2161 tagtctctct aaccataacc cttatatctc gcggcaaacg tggcaaggac agtgaggtgg 2221 ccgagttgac cattgatttg gccagcttga agaatggcca tgagaccgaa gaatggtatc 2281 aactcaccgg catgactccc atgggtgaat ggggttccct gcgtttacgt atgcgttatt 2341 tagatgatct cattatgcca tgtgaagaat atagtccact gcagcagctg ctgcttgaac 2401 ccgagctgta ctctgtcaag gctttggccg aactctgcca caatgatcgt gtgccgctgg 2461 ccacctcctt gttgcgtgtc ttccgccatg agaaacgtga aaccgagctg atacgtgtcc 2521 tatgccaagc ggaaatagcg cgagaaaatg aaaccaccac tttattccgt ggtgccagtc 2581 tggccactac cctaatggat ttgtatatgc gcacagaatg tacgggtttc ctacaagcgg 2641 ccatttcgga gaccatacaa cgtattatgg atagcaaaca atcggctgaa ttgaatccca 2701 caaaaatgga tgttaacgat gatgcctgct ctaatgctga gttccttttg caaattctcg 2761 atttggtgac acattcgata ttcacctcac ccgaggcctg tccacgttcg gtgcgtttta 2821 tatgtaattg cttgcaaaag gctgtggtgg ccaaatggcc cacagaacgt ttggtgagga 2881 ctcgtgtggt gtcaggcttc attttcttgc gtttgttgtg tccctcgttg ctgaatccac 2941 gtcaatttgg tttggtcaat gagaccccac cggcagcggc tacgagatct ttggttatgg 3001 tggcaaagtg cttgcagaac ttggcgaatt taatcgaatt cggtgggaag gagcaataca 3061 tggaggtagt caatcccttt atactcaaaa ataaagaacg catgatagtc tttctcgatc 3121 aattatccat ggtgacagat cctaatccac ctccaggttg gaattctgaa caaagctcca 3181 atcaatctcc tcaagatacg ggtcgtgaac ttgcaacatt gcatcatata tgtgtttcat 3241 atttaccgga attgcaagaa ttgtcaaata tactctcaat taagaaatta gttactgtta 3301 ccgatatgct tacaaaacat aaacttaaat atcgtgaaat gattagttaa gctaaacaat 3361 gaaatgaaac taatcataat gatgaagaag aacacacaca cacaaacaca aatagaacgc 3421 aacaagaacg agaacattta taatacgcta caagccaagt aacaagaaag gaacaaaaca 3481 aatacacaaa catacataca tacatacata tgaagaaaga catttaactg ccataatgat 3541 gatgaagata aaggatatac atatatgtgg ctaaaattga aaaatagata tcactggaa