Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_013249342 1955 bp mRNA linear INV 02-SEP-2023 (LOC106085217), transcript variant X2, mRNA. ACCESSION XM_013249342 VERSION XM_013249342.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013249342.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1955 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..1955 /gene="LOC106085217" /note="zinc finger protein 660; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:106085217" CDS 84..1862 /gene="LOC106085217" /codon_start=1 /product="transcription factor grauzone isoform X2" /protein_id="XP_013104796.1" /db_xref="GeneID:106085217" /translation="MVCRLCLKAIPSESVIKLYQDLNCATEALEMVKHIEKYLDIEVR QDDVVSTMICQDCHDHLEEFHKFYQDVKGKQCTLHNNFLEVELKEESHDSRDVDVKNN DDSNKVDGNDKISNVAKEIEQAMFESPIDIMKTEADDEKDEQEVIATDVLDDDVDLDK EDVFADDGVDIDSADLQSSEDDVPLINLKTKKKITLKRKYTTKGTPKEPKERKQRREP RERKEPKEPKERKERKVPKERKEPKEPRKKGERKKNLSAQELIATSMELKCDICQVQV NTWKELRQHFLLAHTRTPYIKCCDTVYEKQRPLADHLQWHKNPDAFKCKMCNEVLSNS RDLTSHISSQHPDNVDILENYECEHCFKQFRNYTIFKNHLRTHSKDKDVECQICNKRL ESEFQLRRHMDSFHKDASLHICDICGKHFKCKDSFKRHYQVHQGIVEPAVQCSICKSW LKNQHSLRIHRFVHEEHPNSCNVCGKQFKTRHTLRRHMKYWHELERNLHCTYCDKVFR QKRNLEEHMATHTGAQLYTCPHCGKESRSKSNMYVHIKRVHPNEWWQSKVERLNLDPS TEHPEVEKYRQQQQDVLKLYDTFLNK" misc_feature 87..323 /gene="LOC106085217" /note="Zinc-finger associated domain (zf-AD); Region: zf-AD; smart00868" /db_xref="CDD:214871" misc_feature <687..842 /gene="LOC106085217" /note="DNA-directed RNA polymerase I subunit RPA34.5; Region: RNA_polI_A34; pfam08208" /db_xref="CDD:462395" misc_feature 978..1031 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature <1047..>1379 /gene="LOC106085217" /note="Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]; Region: COG5236" /db_xref="CDD:227561" misc_feature 1053..1115 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1152..1214 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1167..1169,1173..1175,1179..1181,1185..1190, 1197..1202,1209..1211,1251..1253,1257..1259,1269..1274, 1281..1286,1293..1295,1338..1340,1344..1346,1350..1352, 1356..1361,1368..1373,1380..1382) /gene="LOC106085217" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1236..1301 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1323..1385 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1413..1478 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275371" misc_feature 1494..1559 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1509..1511,1515..1517,1521..1523,1527..1532, 1539..1544,1554..1556,1596..1598,1602..1604,1614..1619, 1626..1631,1638..1640,1680..1682,1686..1688,1692..1694, 1698..1703,1710..1715,1725..1727) /gene="LOC106085217" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1581..1808 /gene="LOC106085217" /note="N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Region: SUF4-like; cd20908" /db_xref="CDD:411020" misc_feature 1581..1658 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 1581..1643 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1596..1598,1626..1628,1647..1649,1653..1655, 1662..1664,1683..1685) /gene="LOC106085217" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:411020" misc_feature 1665..1730 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 1665..1730 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 1955 /gene="LOC106085217" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 taagatagaa agaagaaaat atacacatcc cattttcttg gtgtccgaga caaaaaattg 61 caaattggaa aaataccaat aaaatggttt gccgtttgtg tctaaaagca attcctagtg 121 aatctgtaat aaaattatac caagatttaa actgtgcaac tgaagcactc gaaatggtaa 181 aacatattga aaagtaccta gatattgagg ttaggcaaga tgatgttgtc tccacaatga 241 tatgtcagga ttgccatgac cacttggagg aatttcataa attctatcaa gacgtgaaag 301 ggaagcaatg tacacttcat aacaattttc tggaagttga gcttaaagaa gaaagtcatg 361 atagccggga tgtcgatgtt aagaacaatg acgatagcaa caaagtggat ggtaatgata 421 agattagcaa cgttgccaag gaaatcgaac aagcaatgtt cgaaagtcct attgatatca 481 tgaaaaccga ggcagatgat gaaaaggatg agcaagaagt gatagcaacg gatgtgctag 541 atgatgatgt ggatttggat aaagaggacg tgtttgcgga tgacggtgtt gacattgaca 601 gcgccgattt acaatcatca gaggacgatg tacctttaat aaacttgaaa actaagaaga 661 aaatcacatt aaagcgaaaa tacacaacaa agggcacgcc gaaagaacca aaagaacgca 721 agcaacgcag agaaccaaga gaacgcaagg aaccaaaaga acctaaggaa cggaaagaac 781 gtaaagtgcc aaaggagaga aaagaaccaa aagaacccag aaagaaaggc gaaagaaaaa 841 agaatctatc agcgcaagag cttatagcaa cttcaatgga attaaaatgt gacatttgtc 901 aagttcaagt taacacatgg aaagaattaa gacaacactt tttattggct cacacgcgta 961 caccttacat aaaatgttgt gatacagttt atgaaaaaca acggcccttg gccgatcatc 1021 ttcaatggca caaaaatccc gatgcattca aatgcaaaat gtgcaatgag gtactatcta 1081 attccagaga tttgacctct cacattagca gccaacatcc tgataatgtc gatatacttg 1141 aaaattatga gtgcgaacat tgttttaaac aattccgtaa ttacacaata ttcaaaaatc 1201 atttacgtac ccacagcaaa gacaaagacg ttgaatgcca aatatgcaac aaaagattag 1261 aaagtgaatt ccaattgcga cgtcatatgg attcctttca caaggacgct tctttgcaca 1321 tatgtgacat ttgtggtaaa catttcaaat gtaaagattc ctttaaacga cactaccaag 1381 tacatcaagg catcgttgaa ccagctgtgc agtgttccat atgcaagtcg tggcttaaaa 1441 atcagcacag tttacgcata catcggttcg tgcatgagga acatcccaat tcgtgcaatg 1501 tgtgtggaaa acagtttaag acgcgtcaca ccttacgtag gcatatgaaa tattggcatg 1561 aattggaacg taatctacac tgcacgtatt gcgacaaagt gttccgccag aaacgcaatt 1621 tggaggaaca catggccacg cacaccggtg cccagttgta tacatgcccc cattgcggta 1681 aggaatcgcg atccaaatcg aacatgtatg tccatataaa acgtgtgcat ccaaatgaat 1741 ggtggcaatc gaaagtggaa cgtttaaatt tagatccaag cacagaacat cccgaggtag 1801 aaaaatatcg tcaacagcaa caagatgtat tgaaattgta tgatactttt ttaaataaat 1861 aataaaaaca caaaaaactg ttgtaaaaat ttgttaatat gaaaataaat tacaaaacaa 1921 ggttttttct gtgcctccca gaggtaaagt gttta