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LOCUS XM_013247830 5180 bp mRNA linear INV 02-SEP-2023 (LOC106084257), transcript variant X3, mRNA. ACCESSION XM_013247830 VERSION XM_013247830.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247830.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5180 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5180 /gene="LOC106084257" /note="E3 ubiquitin-protein ligase HECW2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106084257" CDS 59..1345 /gene="LOC106084257" /codon_start=1 /product="E3 ubiquitin-protein ligase HECW2 isoform X3" /protein_id="XP_013103284.1" /db_xref="GeneID:106084257" /translation="MELMWHFCLFEQEIMSYVPIEERSPQGSPVLNSRMMQRAPPPFR RDFEAKLRSFYRKLESKGYGQGPHKLKLQIRRTHLLEDAFRRIMSANKKDLQRGRLAV LWDTEEGLDYGGPSREFFFLLSRELFNPYYGLFEYSANDTYTVQVSPLSAFVDNCHDW FRFSGRVLGLALVHQYLLDAFFTRPFYKALLRLPVALSDLESLDSEFHQSLQWIRDND IGTGIDLGLTFCVTEELLGRVVERELKPGGKNIIVNEKNKKEYLERMIKWRLERGVQE QTESLVRGFYEVVDSRLVSVFDARELELVIAGTAEIDINDWRLNTEYRSGYHDNHQVI IWFWQVIEKFTNEQRLRLLQFVTGTSSIPYEGFSALRGSTGPRRFCIEKWGKPNALPR AHTCFNRLDLPPYPTPELLYEKLLLAVEETNTFGIE" misc_feature 266..1336 /gene="LOC106084257" /note="HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional...; Region: HECTc; cd00078" /db_xref="CDD:238033" misc_feature order(284..286,377..379,410..412,593..595,1121..1123, 1226..1231,1238..1252,1310..1312,1331..1333) /gene="LOC106084257" /note="catalytic cleft [active]" /db_xref="CDD:238033" misc_feature order(677..679,686..691,695..700,707..709,731..733, 737..739,749..751,755..757,773..775,788..790,839..841, 851..853) /gene="LOC106084257" /note="E2 interaction site [active]" /db_xref="CDD:238033" ORIGIN 1 agtttttgtg aatcctgaaa taattatcaa aattagaaaa taacaattga gtttttaaat 61 ggagttaatg tggcattttt gtctcttcga acaggaaata atgagctatg tgccaatcga 121 agaacgcagt ccccaaggct ctccggtgct caactcgcgt atgatgcagc gtgctccacc 181 gccattccgg cgtgatttcg aggctaaatt gagaagtttc tatagaaaac ttgaatcgaa 241 gggatacggc caaggacctc ataaattgaa attacaaatt cgccgtactc acttgctgga 301 ggatgccttc cgacgcatta tgtctgccaa caaaaaagac ttacaaagag gacgcttagc 361 tgtactctgg gatactgaag agggtctcga ctatggagga ccatcaagag aattcttctt 421 cctgttatcc cgtgaattat tcaatcccta ctatggtctc tttgaatatt ctgccaatga 481 cacttacacg gtacaagtgt cgccactttc tgcttttgta gataattgcc acgattggtt 541 ccgctttagc ggtcgtgttc tgggcttagc tttagtgcat caatacctat tggatgcctt 601 cttcacacgg ccattttata aggctttatt aagacttccg gtagctttaa gtgatttaga 661 atcattggat agtgaattcc atcagtcatt gcaatggata cgtgacaatg acattggtac 721 gggtatcgat ttaggtctca ccttctgtgt caccgaagag cttttggggc gtgtggtgga 781 acgtgaactc aagccaggtg gcaagaatat catcgttaat gagaaaaaca aaaaggaata 841 cctcgagcgc atgatcaaat ggcgcctgga acgtggtgta caagagcaaa cggaatcttt 901 ggtacgtggc ttctatgaag tcgtagattc tcgtctggta tcggtattcg atgcccgcga 961 attggagctg gtcatagccg gaacggcgga gatagacatc aacgattggc gccttaatac 1021 cgaatatcga tcgggttatc atgataatca tcaggtgatc atatggttct ggcaggtcat 1081 tgagaagttt acaaatgagc aacgcttgcg tctattacaa tttgtcaccg gtacctcaag 1141 cataccctac gaaggttttt cagcattacg cggttcaacg ggtccacggc gtttttgcat 1201 tgaaaaatgg ggtaaaccaa atgccttgcc acgagcccat acatgtttca atcgtctaga 1261 cctaccaccc tatcccactc cagagctgtt gtatgaaaaa cttttactgg ctgtagagga 1321 gacaaatacc tttggcattg agtaaatctt cagttgtttt gctttttctc cattcgattt 1381 aaatttcaac tatggtgtgt gtgtgaggcg caagaagaat tgaagaagtt gagtaaaaca 1441 agtgaaaaac gtgatatttt taatgtcctt tagttattat cgatatatat tccaatatta 1501 tattataatg attatattta aaataattat taaatgtaga tgtgctcgtg tgttttgtcc 1561 atctagttaa gattatctaa tttaagtatt tatttacaaa gtgaaatatt ttttattttc 1621 gattacagct atgactataa tttatttgaa attagttttt acacaaaaaa aaaatattat 1681 agttggccat tttattagac attatgatta ttattatgat aataatgtgg atggacccaa 1741 aatgtatagc atagttgttg gcccatacct agtagtttga tactttgcct gaccaattgg 1801 tatttcaaac atcatttatt caaaataatc tttagggttt ctctgcaagt ttttagcttt 1861 ttgttcaacc tttccgtatt cttgtctttt tagtcattag cattgtaagt gatataggaa 1921 aaaaaatcaa caaagaatta aacaaactga gatgtttgtc aacacattcc tcattttaag 1981 caaaatggtc catagttact cgcaaacata tttctttata gaatatttcc agaaatgatt 2041 ggtagttttt gccattttca acatatatgc cgggaaacat ttcgatcctt attttaacga 2101 ttcgctttac tatatttaaa gatgtcaaat gtttcaattt ttcaaggata cattttcttt 2161 catagaagat tttttacttt atattaagaa ataattacct tcaaatttag tataatacat 2221 acttaacttt taaactaaag ttaaaatata gtcttgcctt tgagaaaagt acagcattgt 2281 accttagtta tgaaaataag cggtgttata cactgaggcg gcagcccttc ccgatgaaaa 2341 actccatcgg gtcaatccgg tacgtacaat cggctgtcat gggattgcca tggagttcgg 2401 tgtacttggc tacagctttt aacatggtcc aaatttgaaa attatttata ttcatattga 2461 actctcaata atcatccatt agaatcccat attgtttcgt ttcctcaaaa attaacccac 2521 atttttatat aattttcata tactgatctc aaactgcttt tgtttgagcc ccatcctgcc 2581 ccgttcggtg tatatgtgca tttggtgtat aattttgggg tgggcgaccc gcctgggatt 2641 ctacttccaa taacctttca tttgataccc atattgccca atcggtaaag ttgtgaattt 2701 ttggacggtt tttggtgtgg ggcgggcccc caatactaaa ggttaaattg atgtaacaag 2761 ttcctactcc actcttaaat acctttcatt tgatacccat attgtctcaa tcgatagaca 2821 tgtccgtttg gttgggtttt cggatggggc gtcccccatg gttatttgac cccaaagctt 2881 taaccaatta tgtgtttttg ggatatcata agttgataca cataaattca cttaaatcga 2941 gatcacccat ctccgcgatc tggcgttttt ggaaattgtg attagggtga gtctctgccc 3001 cctcgcggat atcacaaaat gaagtaccct attttaagcg ggggctaaac tctacaatct 3061 ttgaaaattt catgaaaatc ggttcagcct ttttgagtct attttgaaca aacaaaaaaa 3121 agcgcaacac tttcattatt atataataga ggtccttatt ctaaagtctg gtttctcaat 3181 ctgtaaatca ttagcaaaat ccttaggtaa aggaagaaaa atcttaaatt tttgtacttt 3241 ctaccttata atgggaggaa tactaacttt gtcattccgt ttgtaacaac tcgaaaacag 3301 atctaagcca tcatgaagca ttgtccccat ggttacgacc agtggggcat agtttggcag 3361 aactgattga aggctccaca ttctgcacgg cgaatgagaa gggtgcagca gctcgccaga 3421 tatttccttt gtatcccttg ttctcctgaa tgacgtatct tggcaagccg ccctttcttt 3481 aggatctgac cactttccca taattctcac catccaccga gtacccgact tcataacctc 3541 tgagcgccga acgtttatca atcaaaacaa ggtcgattgg gtcggcttca gagagtacac 3601 caatcgccgc ctcccatcaa acgtgctaat tgccgagggg aaattccaag gcatcattaa 3661 cgcatcatcc gctcgtttta taccagtcag tcgattatcc caaatgtggc ccaatattcc 3721 ggcgcaggca atgctactca tagtcgagcg tgatgggatt ctttgcacgg acccactaac 3781 cccagaatca gctagctgaa tctggcaata aacagggtag tcaacgaaca taagcggaat 3841 atgtggttga aattcttgaa ggcacggata gctgtaagca ccacacaggc tggtacattg 3901 aggttcgctt ttcattacgt tcacaggttg caaatagtgg aatgctccat acggggtagc 3961 tgcaacacat tctccccacg tgccacagta atttgcgatg aggtcaaaag tagaaacaaa 4021 gtcctcaaat cacttaccgg cagcacttgg ggtgctgaca aagaaactgg ctatttcctg 4081 gtagaataat attcagatct gtcagaatgc cgctcttcga actgctacgg gctgtctcct 4141 cagttctcac gtggactacc tccaccagaa gtcaacgatc ttacccgtgc gaagacataa 4201 ctacatgctg tccaagcaat accttctggg ctgttatcgc aaggaccata gaaatcatca 4261 tcttgtggat agttatacac cgcccagaag ccttgaggtg ggtgtacatg atctcgagcg 4321 agagaaatcc ggcagttcta gacagcatta tgcaaacacg gtagcagatg cgttgaatag 4381 ccactgggtt aatatggtcc ttggagaacg actgcctccc attgcaaatg caaatttgcc 4441 catgaacatt tcattaaggg acaggggcaa acttcgcaaa tattaatgag tgcagtctga 4501 ttcaaactta agctcaatga taaggggcct cctttttata gtcgagttcg aacgatgtgc 4561 cacagtgcga cacctctttg gggagaagtt tttacatggc ttctatgcat gcatggaggg 4621 gaaaaccacc gctgaaattt ttttttctgg tgttctcgcc agggttcgaa cccggacgtt 4681 cagcataata ggcgggcatg gtaacctctg cccctccatt gcatttatag cacaccgcaa 4741 tttggcttta aaaaaaacaa agttttttat tttgctttct attctacaaa gaatccaaca 4801 accgaaataa aaagtaacaa aacaacttag aagttttttt caagaaacca tggataaaaa 4861 ccaaggttct ggaccaaatg gaatatgcct ttgccatctg ttgttgttat tgttgtagca 4921 atgtgttata cactgaggcg gcagccgatg aagagctcca tcgggtcaat ccggtacgta 4981 caaccggctg ccatgggatc gccatttgtt gtgttaacag ttttctaacg tcgaatattc 5041 gggcaccatc acatggtata ttcgcaaagt ttatatgatg ctgaagcttt tctgcaacaa 5101 ggaactgagt caatgttcgc ttttcgaatc gaacgctgga ttaatgtctt tcatgttgtt 5161 tttacaacac taatttatgg