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LOCUS XM_013247829 5533 bp mRNA linear INV 02-SEP-2023 (LOC106084257), transcript variant X2, mRNA. ACCESSION XM_013247829 VERSION XM_013247829.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247829.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5533 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5533 /gene="LOC106084257" /note="E3 ubiquitin-protein ligase HECW2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:106084257" CDS 394..1698 /gene="LOC106084257" /codon_start=1 /product="E3 ubiquitin-protein ligase HECW2 isoform X2" /protein_id="XP_013103283.1" /db_xref="GeneID:106084257" /translation="MGFFSKAAYIVWAVLFEQEIMSYVPIEERSPQGSPVLNSRMMQR APPPFRRDFEAKLRSFYRKLESKGYGQGPHKLKLQIRRTHLLEDAFRRIMSANKKDLQ RGRLAVLWDTEEGLDYGGPSREFFFLLSRELFNPYYGLFEYSANDTYTVQVSPLSAFV DNCHDWFRFSGRVLGLALVHQYLLDAFFTRPFYKALLRLPVALSDLESLDSEFHQSLQ WIRDNDIGTGIDLGLTFCVTEELLGRVVERELKPGGKNIIVNEKNKKEYLERMIKWRL ERGVQEQTESLVRGFYEVVDSRLVSVFDARELELVIAGTAEIDINDWRLNTEYRSGYH DNHQVIIWFWQVIEKFTNEQRLRLLQFVTGTSSIPYEGFSALRGSTGPRRFCIEKWGK PNALPRAHTCFNRLDLPPYPTPELLYEKLLLAVEETNTFGIE" misc_feature 619..1689 /gene="LOC106084257" /note="HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional...; Region: HECTc; cd00078" /db_xref="CDD:238033" misc_feature order(637..639,730..732,763..765,946..948,1474..1476, 1579..1584,1591..1605,1663..1665,1684..1686) /gene="LOC106084257" /note="catalytic cleft [active]" /db_xref="CDD:238033" misc_feature order(1030..1032,1039..1044,1048..1053,1060..1062, 1084..1086,1090..1092,1102..1104,1108..1110,1126..1128, 1141..1143,1192..1194,1204..1206) /gene="LOC106084257" /note="E2 interaction site [active]" /db_xref="CDD:238033" ORIGIN 1 gtgcccatcg aaatccatcg gaaattgaat gatttgccat ttttgaagaa tccccttaaa 61 cttatttaat aatgtcagtg gtgtgctgaa attaattata taacattaag aagcatacag 121 actctttaaa acaattgacg aaagtgaaat caaataccaa acaataaaaa ctcgcaaaga 181 cattttgaat ctttttttgc tttgccaact atccgcaatc gctgctgcac caaccgacgt 241 tatctccatt atccaaaagt tttagaatgc ttgaaatctc gcctctcctg ttgatttgtg 301 ttgattccac gagtccaatt acaaatctcg acatcaactc tccagctgca aggcgaatta 361 aggaattttg gaattcaaag aatttcattc actatgggat ttttctccaa agctgcctat 421 attgtgtggg ctgttctctt cgaacaggaa ataatgagct atgtgccaat cgaagaacgc 481 agtccccaag gctctccggt gctcaactcg cgtatgatgc agcgtgctcc accgccattc 541 cggcgtgatt tcgaggctaa attgagaagt ttctatagaa aacttgaatc gaagggatac 601 ggccaaggac ctcataaatt gaaattacaa attcgccgta ctcacttgct ggaggatgcc 661 ttccgacgca ttatgtctgc caacaaaaaa gacttacaaa gaggacgctt agctgtactc 721 tgggatactg aagagggtct cgactatgga ggaccatcaa gagaattctt cttcctgtta 781 tcccgtgaat tattcaatcc ctactatggt ctctttgaat attctgccaa tgacacttac 841 acggtacaag tgtcgccact ttctgctttt gtagataatt gccacgattg gttccgcttt 901 agcggtcgtg ttctgggctt agctttagtg catcaatacc tattggatgc cttcttcaca 961 cggccatttt ataaggcttt attaagactt ccggtagctt taagtgattt agaatcattg 1021 gatagtgaat tccatcagtc attgcaatgg atacgtgaca atgacattgg tacgggtatc 1081 gatttaggtc tcaccttctg tgtcaccgaa gagcttttgg ggcgtgtggt ggaacgtgaa 1141 ctcaagccag gtggcaagaa tatcatcgtt aatgagaaaa acaaaaagga atacctcgag 1201 cgcatgatca aatggcgcct ggaacgtggt gtacaagagc aaacggaatc tttggtacgt 1261 ggcttctatg aagtcgtaga ttctcgtctg gtatcggtat tcgatgcccg cgaattggag 1321 ctggtcatag ccggaacggc ggagatagac atcaacgatt ggcgccttaa taccgaatat 1381 cgatcgggtt atcatgataa tcatcaggtg atcatatggt tctggcaggt cattgagaag 1441 tttacaaatg agcaacgctt gcgtctatta caatttgtca ccggtacctc aagcataccc 1501 tacgaaggtt tttcagcatt acgcggttca acgggtccac ggcgtttttg cattgaaaaa 1561 tggggtaaac caaatgcctt gccacgagcc catacatgtt tcaatcgtct agacctacca 1621 ccctatccca ctccagagct gttgtatgaa aaacttttac tggctgtaga ggagacaaat 1681 acctttggca ttgagtaaat cttcagttgt tttgcttttt ctccattcga tttaaatttc 1741 aactatggtg tgtgtgtgag gcgcaagaag aattgaagaa gttgagtaaa acaagtgaaa 1801 aacgtgatat ttttaatgtc ctttagttat tatcgatata tattccaata ttatattata 1861 atgattatat ttaaaataat tattaaatgt agatgtgctc gtgtgttttg tccatctagt 1921 taagattatc taatttaagt atttatttac aaagtgaaat attttttatt ttcgattaca 1981 gctatgacta taatttattt gaaattagtt tttacacaaa aaaaaaatat tatagttggc 2041 cattttatta gacattatga ttattattat gataataatg tggatggacc caaaatgtat 2101 agcatagttg ttggcccata cctagtagtt tgatactttg cctgaccaat tggtatttca 2161 aacatcattt attcaaaata atctttaggg tttctctgca agtttttagc tttttgttca 2221 acctttccgt attcttgtct ttttagtcat tagcattgta agtgatatag gaaaaaaaat 2281 caacaaagaa ttaaacaaac tgagatgttt gtcaacacat tcctcatttt aagcaaaatg 2341 gtccatagtt actcgcaaac atatttcttt atagaatatt tccagaaatg attggtagtt 2401 tttgccattt tcaacatata tgccgggaaa catttcgatc cttattttaa cgattcgctt 2461 tactatattt aaagatgtca aatgtttcaa tttttcaagg atacattttc tttcatagaa 2521 gattttttac tttatattaa gaaataatta ccttcaaatt tagtataata catacttaac 2581 ttttaaacta aagttaaaat atagtcttgc ctttgagaaa agtacagcat tgtaccttag 2641 ttatgaaaat aagcggtgtt atacactgag gcggcagccc ttcccgatga aaaactccat 2701 cgggtcaatc cggtacgtac aatcggctgt catgggattg ccatggagtt cggtgtactt 2761 ggctacagct tttaacatgg tccaaatttg aaaattattt atattcatat tgaactctca 2821 ataatcatcc attagaatcc catattgttt cgtttcctca aaaattaacc cacattttta 2881 tataattttc atatactgat ctcaaactgc ttttgtttga gccccatcct gccccgttcg 2941 gtgtatatgt gcatttggtg tataattttg gggtgggcga cccgcctggg attctacttc 3001 caataacctt tcatttgata cccatattgc ccaatcggta aagttgtgaa tttttggacg 3061 gtttttggtg tggggcgggc ccccaatact aaaggttaaa ttgatgtaac aagttcctac 3121 tccactctta aatacctttc atttgatacc catattgtct caatcgatag acatgtccgt 3181 ttggttgggt tttcggatgg ggcgtccccc atggttattt gaccccaaag ctttaaccaa 3241 ttatgtgttt ttgggatatc ataagttgat acacataaat tcacttaaat cgagatcacc 3301 catctccgcg atctggcgtt tttggaaatt gtgattaggg tgagtctctg ccccctcgcg 3361 gatatcacaa aatgaagtac cctattttaa gcgggggcta aactctacaa tctttgaaaa 3421 tttcatgaaa atcggttcag cctttttgag tctattttga acaaacaaaa aaaagcgcaa 3481 cactttcatt attatataat agaggtcctt attctaaagt ctggtttctc aatctgtaaa 3541 tcattagcaa aatccttagg taaaggaaga aaaatcttaa atttttgtac tttctacctt 3601 ataatgggag gaatactaac tttgtcattc cgtttgtaac aactcgaaaa cagatctaag 3661 ccatcatgaa gcattgtccc catggttacg accagtgggg catagtttgg cagaactgat 3721 tgaaggctcc acattctgca cggcgaatga gaagggtgca gcagctcgcc agatatttcc 3781 tttgtatccc ttgttctcct gaatgacgta tcttggcaag ccgccctttc tttaggatct 3841 gaccactttc ccataattct caccatccac cgagtacccg acttcataac ctctgagcgc 3901 cgaacgttta tcaatcaaaa caaggtcgat tgggtcggct tcagagagta caccaatcgc 3961 cgcctcccat caaacgtgct aattgccgag gggaaattcc aaggcatcat taacgcatca 4021 tccgctcgtt ttataccagt cagtcgatta tcccaaatgt ggcccaatat tccggcgcag 4081 gcaatgctac tcatagtcga gcgtgatggg attctttgca cggacccact aaccccagaa 4141 tcagctagct gaatctggca ataaacaggg tagtcaacga acataagcgg aatatgtggt 4201 tgaaattctt gaaggcacgg atagctgtaa gcaccacaca ggctggtaca ttgaggttcg 4261 cttttcatta cgttcacagg ttgcaaatag tggaatgctc catacggggt agctgcaaca 4321 cattctcccc acgtgccaca gtaatttgcg atgaggtcaa aagtagaaac aaagtcctca 4381 aatcacttac cggcagcact tggggtgctg acaaagaaac tggctatttc ctggtagaat 4441 aatattcaga tctgtcagaa tgccgctctt cgaactgcta cgggctgtct cctcagttct 4501 cacgtggact acctccacca gaagtcaacg atcttacccg tgcgaagaca taactacatg 4561 ctgtccaagc aataccttct gggctgttat cgcaaggacc atagaaatca tcatcttgtg 4621 gatagttata caccgcccag aagccttgag gtgggtgtac atgatctcga gcgagagaaa 4681 tccggcagtt ctagacagca ttatgcaaac acggtagcag atgcgttgaa tagccactgg 4741 gttaatatgg tccttggaga acgactgcct cccattgcaa atgcaaattt gcccatgaac 4801 atttcattaa gggacagggg caaacttcgc aaatattaat gagtgcagtc tgattcaaac 4861 ttaagctcaa tgataagggg cctccttttt atagtcgagt tcgaacgatg tgccacagtg 4921 cgacacctct ttggggagaa gtttttacat ggcttctatg catgcatgga ggggaaaacc 4981 accgctgaaa tttttttttc tggtgttctc gccagggttc gaacccggac gttcagcata 5041 ataggcgggc atggtaacct ctgcccctcc attgcattta tagcacaccg caatttggct 5101 ttaaaaaaaa caaagttttt tattttgctt tctattctac aaagaatcca acaaccgaaa 5161 taaaaagtaa caaaacaact tagaagtttt tttcaagaaa ccatggataa aaaccaaggt 5221 tctggaccaa atggaatatg cctttgccat ctgttgttgt tattgttgta gcaatgtgtt 5281 atacactgag gcggcagccg atgaagagct ccatcgggtc aatccggtac gtacaaccgg 5341 ctgccatggg atcgccattt gttgtgttaa cagttttcta acgtcgaata ttcgggcacc 5401 atcacatggt atattcgcaa agtttatatg atgctgaagc ttttctgcaa caaggaactg 5461 agtcaatgtt cgcttttcga atcgaacgct ggattaatgt ctttcatgtt gtttttacaa 5521 cactaattta tgg