Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_013247208 2674 bp mRNA linear INV 02-SEP-2023 (LOC106083905), mRNA. ACCESSION XM_013247208 VERSION XM_013247208.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247208.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2674 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2674 /gene="LOC106083905" /note="protein ultraspiracle; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins" /db_xref="GeneID:106083905" CDS 270..1670 /gene="LOC106083905" /codon_start=1 /product="protein ultraspiracle" /protein_id="XP_013102662.1" /db_xref="GeneID:106083905" /translation="MDNDQDPGFRLRPMSPQEIKPDISLLNENNATNFSPKPGSPGPF GAIDLQAMNVANAVAAAAAANNQNQMLQTTPPQQQLQQQYPPNHPLSGSKHLCSICGD RASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRNCIIDKRQRNRCQYCRYQKCLVC GMKREAVQEERQRGTRAANARASGVGGITGSGVGNEDFKPSSSLRDLTIERIMEAEQK AESQSGDNVLPFLRVGNNSMVQSDYKGAVSHLCQMVNKQLFQMVEYARRTPHFTHLQR EDQIILLKAGWNELLIANVAWCSIDSLDAEYATPGGGHDSSFGRRSPVRQPQQLFLNQ NFSYHRNSAIKANVVSIFDRILSELSIKMKRLNIDRSELSCLKAIILFNPDIRGLKCR KDVEGCREKIYACLDEHCRTEHPGDDGRFAQLLLRLPALRSISLKCLDHLFFFRLIGE RPLEQLIAEQLDAQGC" misc_feature 552..782 /gene="LOC106083905" /note="DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers; Region: NR_DBD_RXR; cd06956" /db_xref="CDD:143514" misc_feature order(558..560,567..569,609..611,618..620,666..668, 684..686,714..716,723..725) /gene="LOC106083905" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:143514" misc_feature order(573..575,696..701,705..707,711..713) /gene="LOC106083905" /note="RXR/ECR heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:143514" misc_feature order(585..596,612..617,621..623,627..629,633..638, 645..647,669..671,705..710,717..719,726..728,765..773, 777..782) /gene="LOC106083905" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143514" misc_feature order(651..653,720..722,729..734,741..746,756..764, 774..782) /gene="LOC106083905" /note="RXR/PPAR heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:143514" misc_feature order(699..704,711..713) /gene="LOC106083905" /note="RXR/RXR homodimer interface DR1 [polypeptide binding]; other site" /db_xref="CDD:143514" misc_feature 762..779 /gene="LOC106083905" /note="RXR/RXR homodimer interface DR2 [polypeptide binding]; other site" /db_xref="CDD:143514" misc_feature order(774..776,780..782) /gene="LOC106083905" /note="RXR/RAR heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:143514" misc_feature 885..1607 /gene="LOC106083905" /note="The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily; Region: NR_LBD_RXR_like; cd06943" /db_xref="CDD:132741" misc_feature order(1017..1022,1026..1031,1038..1040,1140..1142, 1152..1154,1161..1163,1263..1268,1311..1313,1581..1583, 1590..1595) /gene="LOC106083905" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:132741" misc_feature order(1044..1046,1053..1055,1065..1067,1080..1082, 1095..1100,1104..1109,1119..1121) /gene="LOC106083905" /note="coactivator recognition site [polypeptide binding]; other site" /db_xref="CDD:132741" misc_feature order(1329..1331,1341..1343,1353..1355,1404..1406, 1422..1424,1464..1469,1476..1481,1488..1490,1530..1535, 1542..1547,1551..1559,1563..1568,1575..1577,1587..1589) /gene="LOC106083905" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:132741" misc_feature order(1329..1331,1341..1343,1353..1355,1422..1424, 1428..1430,1455..1457,1476..1478,1488..1490,1524..1526, 1533..1538,1545..1556,1563..1568,1575..1577,1587..1589) /gene="LOC106083905" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:132741" ORIGIN 1 aatttacccg aggtgaatta aatacgtgag aaaataaaat gtcgacgcga aaacttttca 61 ttcattagtc aggcggagta gacattcttt gtttgtaaag aaaaattttt acgatttcac 121 aaagttttga agtttgcaca aaattgcaaa agcatttgat gtagaatata ccacgcatat 181 cttgttaaat taacaaatcc aaagctaaga ccagtcactt gggtcgcagt gctgcagcaa 241 cgaaaaacaa aaaaacacaa gaaaacataa tggacaatga ccaagaccct ggatttcgac 301 ttaggcccat gtcaccgcag gagataaaac ctgacatctc gctgttgaat gagaataatg 361 caacaaactt ttcacctaaa ccgggaagtc ctggaccctt tggggccatt gatttgcagg 421 caatgaatgt ggccaatgct gttgcagcag ccgctgctgc caacaaccaa aaccaaatgt 481 tgcagacaac gccgccacag caacaattac agcaacagta tcctcccaac caccctttga 541 gtggttcgaa acacttgtgc tccatatgtg gtgatcgggc cagtggcaaa cactatggtg 601 tctacagctg cgaaggctgt aaaggctttt tcaagcgtac tgtgcgcaag gatttgacgt 661 atgcctgtcg tgaagaccga aattgtataa ttgataaacg ccaaaggaat cgctgtcagt 721 attgtcgcta tcagaaatgt ttggtgtgcg gcatgaaacg agaagctgtc caagaggaac 781 gtcaaagggg cacaagggct gctaatgcta gggctagcgg agttggtggc atcaccggca 841 gcggagtggg aaatgaagat tttaagccaa gcagctcttt gcgtgatcta accatagagc 901 gcatcatgga ggctgaacaa aaagcggaat ctcagagtgg tgataatgtg ctacccttcc 961 tgagagtcgg caataattcc atggtacaat cagattacaa gggtgcggtg tcacatcttt 1021 gccaaatggt aaacaaacaa ctcttccaaa tggtggagta tgctcggcgt acgccacact 1081 tcacgcactt gcagcgagaa gatcaaatca tactacttaa ggctggttgg aatgagctgc 1141 tgatagcaaa tgttgcctgg tgcagtattg attcactgga tgcagagtat gccacacctg 1201 gaggtggtca tgatagttca tttggtcgcc gttcaccagt tcgccagcca caacagctct 1261 tcctcaatca aaacttctca tatcaccgca atagtgcgat taaagccaat gtggtctcaa 1321 tattcgatcg catcttgtcc gagctgagca ttaaaatgaa acgtttgaac attgaccgtt 1381 cggaattgtc ttgcctgaaa gcaatcatcc tcttcaatcc agatatacgt ggactaaagt 1441 gtcgaaaaga cgtcgaggga tgtcgtgaga agatatatgc ctgtctggat gaacactgcc 1501 gcacagagca tcctggcgat gatggtcgtt ttgcgcagct attacttcgt ttgccggcac 1561 tgcgttccat tagtcttaag tgcttagatc acttattttt cttccgttta attggcgaaa 1621 ggcctctgga gcaattgatt gccgagcaat tagacgccca aggatgttag aagaagaata 1681 atgcaaacga ggttctatct tagtgaatat gtttattcgc agagggctgc cgcacgaatg 1741 ctgggtggtg ggtttagtgt gtcatgcata gcaagaagct aagctcttca atgtgatcga 1801 tcacatcctg cccgctcaat gctgctcgct gagttcgaat agtagcaata gttgtattta 1861 gctctaataa aatctcctgt tctccgttct tttagattga ggaagaagaa gaagaagaaa 1921 agaagcatat atatgtaaat aacaccctgt gtcagcacat actgtggcca ctgacttcca 1981 agtgtttata ccgttgagga ttgattctaa gacgacctac attaaaaatg gctaacatag 2041 taacacggtt gggcaaagct agaccgctac gcttaagaca accctctcca ttagcagagt 2101 gattgagtct ttcttaagtt gctgcaccat ttccttaaac tactccttaa attaatccac 2161 cgccgataat tgtccgaatt ctagtagccc agagttaatg actcttggag cgaactctag 2221 gattcacatt ctccgtttcc tggggacaag tcttttattt aaatatatat attttttttg 2281 tattgttatg ttcgtttttt agttcacaat tgccttaata ttagttgcat ttgtttagat 2341 gtagacatcc ttttttacgc ctttttccat tttatattga ttcgatttaa aatgttttta 2401 taaagctgta ggtctatgtg tggtgtgact gtaattaaat aagagtacga aaatagtgtt 2461 cgattattaa ctacctattg tatattatta ttactattga cggttataag ctatatatac 2521 atatataaaa aaaatataaa taatgaaaaa aaaaaaaaac acattacata gacacaagcc 2581 aacaaacaca cacacacaca cacacatata tatatatata tatatatatg aacaacaaca 2641 atgatatatt atgaaatata gatattttat tctg