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LOCUS XM_013247203 3939 bp mRNA linear INV 02-SEP-2023 (LOC106083904), transcript variant X1, mRNA. ACCESSION XM_013247203 VERSION XM_013247203.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247203.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3939 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3939 /gene="LOC106083904" /note="alpha-actinin, sarcomeric; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:106083904" CDS 161..2917 /gene="LOC106083904" /codon_start=1 /product="alpha-actinin, sarcomeric isoform X1" /protein_id="XP_013102657.1" /db_xref="GeneID:106083904" /translation="MMMENGLSMEDYGDNYMEQEEEWEREGLLDPAWEKQQKKTFTAW CNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALD FIASKGVQLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQR KTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYSKLSKDNPLENLNTAFDVAEK YLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGNMTHVPEPTRQYTYVP NNYNAETAANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWLNSRQADNSLAG VQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVADISN AWKGLELSEKAFEEWLLAETMRLERLEHLAQKFKIKADAHEEWTRGKEEMLQSQDFRQ CKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNSLEYHDCVSVNARCQRICDQ WDRLGALTQRRRTALDEAERILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHT MEEIQGLIQAHDQFKATLGEADKEFNLVVNLVREVESIVKQYQIPGGLENPYTNVTAH DMTRKWSDVRQLVPQRDQTLANELRKQQNNEMLRRQFAEKANVVGPWIERQMDAVTAI GMGLQGSLEDQLHRLKEYEQAVYAYKPNIEELEKIHQAVQESMIFENRYTNYTMETLR VGWEQLLTSINRNINEVENQILTRDSKGISQDQLNEFRSSFNHFDKKRAGRLTPEEFK SCLVSLGYSIGKDRQGEMDFQRILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVI DSFRILAGDKPYILPDELRRELPPDQAEYCIQRMPPYKGPNGIPGALDYMSFSTALYG ETDL" misc_feature 254..568 /gene="LOC106083904" /note="first calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt1; cd21214" /db_xref="CDD:409063" misc_feature order(269..271,281..283,413..415,425..433,440..445, 488..514,536..538,542..547,554..559,563..568) /gene="LOC106083904" /note="actin binding site [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature order(314..316,320..322,392..400) /gene="LOC106083904" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature 578..919 /gene="LOC106083904" /note="second calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt2; cd21216" /db_xref="CDD:409065" misc_feature order(608..610,620..622,761..769,776..781,824..850, 881..883,887..892,899..904,908..913) /gene="LOC106083904" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409065" misc_feature 1067..1738 /gene="LOC106083904" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1421..2104 /gene="LOC106083904" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1421..1438 /gene="LOC106083904" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1736..1753 /gene="LOC106083904" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1775..2443 /gene="LOC106083904" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 2099..2116 /gene="LOC106083904" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 2465..>2785 /gene="LOC106083904" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" misc_feature 2702..2902 /gene="LOC106083904" /note="Ca2+ insensitive EF hand; Region: EFhand_Ca_insen; pfam08726" /db_xref="CDD:430177" polyA_site 3939 /gene="LOC106083904" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agaaaatttt cttacgagtt cgaacgcacg attatcgttg gcgcaacatt agttttgagt 61 tggctaccaa cgcgagcggg tcattctctt tgcaagcgac acacatttag aatcttaagg 121 atacttcgaa cgaattaaaa gaaaataaca cgaattcaaa atgatgatgg agaacggtct 181 ctccatggag gattatgggg ataactacat ggaacaagaa gaagagtggg agcgcgaggg 241 acttttggat ccagcctggg agaaacaaca aaagaagaca tttacagcat ggtgcaacag 301 tcatttgcgc aaagccggca ctggcatcga aaatatcgaa gatgatttcc gcaatggttt 361 gaaattgatg ttgttgctag aagtaatctc tggtgaaact ttgcccaagc ccgatcgcgg 421 taaaatgcgt ttccacaaaa ttgccaatgt gaataaggca ttggatttca ttgcctccaa 481 gggtgtgcaa ttggtatcga ttggtgctga ggaaattgtc gatggcaatt tgaaaatgac 541 ccttggtatg atttggacca ttatcttgag atttgccatt caagatatct ctgttgaaga 601 gatgaccgcc aaggagggct tgttgttgtg gtgccaacgc aaaactgccc cctataagaa 661 tgtcaatgta cagaacttcc atttgtcatt caaggacggt ttagccttct gcgctttgat 721 ccatcgccac aggcccgact tgattgatta ttccaaactc tccaaagaca atccattgga 781 aaatctcaac actgccttcg atgttgctga gaagtatctt gatattccca gaatgttgga 841 tcctgatgat ttgatcaaca ctcccaagcc ggatgaacgt gccatcatga cctatgtgtc 901 ttgctactac cacgccttcc aaggagccca acaggttgga aatatgacgc atgttcccga 961 acccacaaga caatacacct acgtcccgaa taattacaat gcggaaactg ctgctaaccg 1021 catctgtaag gttttgaagg ttaaccaaga gaatgaacga ctcatggaag agtatgaacg 1081 tcttgccagc gatcttttgg aatggattcg tcgcaccatg ccctggttga actcccgcca 1141 agccgataac tccttggctg gtgtgcaaaa gaaattggag gaataccgca cctatcgtcg 1201 caagcataag cccccacgtg ttgaacaaaa ggctaagctc gaaactaact tcaacacatt 1261 gcaaactaaa ttgcgtctct ccaatcgccc cgcctacttg cccaccgaag gcaagactgt 1321 ggccgacatc tccaatgcct ggaagggttt ggaactttcg gagaaggcct tcgaagaatg 1381 gcttttggct gagaccatgc gtttggaacg cttggaacat ttggcccaaa agttcaagat 1441 caaggccgat gcccacgaag aatggacccg cggcaaggag gaaatgttgc aatcccaaga 1501 tttccgtcaa tgcaagttga acgaattgaa ggctttgaag aagaagcacg aagccttcga 1561 atccgatttg gccgcccacc aggatcgtgt tgagcaaatt gctgctattg ctcaagaatt 1621 gaactccttg gaatatcacg attgcgtttc ggttaacgcc cgctgccaac gcatctgtga 1681 ccaatgggat cgtttgggtg ccttgaccca acgtcgccgc accgctttgg atgaagccga 1741 acgcattttg gagaaaatcg acatcttgca cttggaattc gccaagcgtg ctgctccctt 1801 caacaactgg ttggatggta cacgcgaaga tttggttgac atgttcattg ttcacaccat 1861 ggaggaaatc caaggtctca ttcaggctca tgatcaattc aaggccactt tgggtgaagc 1921 cgataaggaa ttcaacttgg ttgtcaactt ggtgcgtgaa gtcgaatcca ttgttaagca 1981 ataccaaatt cccggtggtt tggagaatcc ctacaccaat gtcactgctc acgatatgac 2041 tcgcaagtgg agcgatgtac gccaattggt gccacaacgt gaccagacct tggccaatga 2101 attgcgcaaa caacagaaca acgaaatgtt gcgcagacaa tttgccgaaa aggccaatgt 2161 tgtgggtccc tggattgagc gtcaaatgga tgctgtgacc gccattggca tgggtcttca 2221 aggctctttg gaagaccaat tgcaccgcct caaggaatac gaacaggctg tgtatgccta 2281 caaacccaat attgaggaat tggagaagat ccatcaagct gtgcaagaat ccatgatctt 2341 tgagaaccgt tacaccaact acacaatgga aactttgcgt gtgggctggg aacaattgct 2401 gacatcgatc aaccgcaaca tcaacgaagt cgaaaaccaa atcctcaccc gtgactcaaa 2461 gggcattagc caagaccaat tgaatgaatt ccgctcgagc ttcaatcact tcgacaagaa 2521 gcgcgctggt cgcttgaccc ccgaggaatt caaatcctgc ctggtgtcat tgggctattc 2581 gattggcaag gatcgtcaag gtgaaatgga cttccaacgt atcttggctg tggtggatcc 2641 caactcgact ggttatgtgc actttgatgc cttcttagat ttcatgacac gcgaaagcac 2701 agacaccgat actgccgaac aggttatcga ttccttcaga attttggcag gtgataagcc 2761 atacatcttg cccgatgaat tgcgtcgcga attgccccca gatcaagctg aatactgtat 2821 ccaacgcatg ccaccctaca agggccccaa tggtattccc ggcgcccttg actacatgtc 2881 cttcagtaca gctctgtatg gtgaaaccga tttgtaaatc aaatgagctc atgtgccaca 2941 aattgttagt tttacgacca caccccccac tacaacaaaa acaacaacaa ctcgtctatt 3001 ctaaatcatt ttaagtaacc aaaagaaaat aaaagaaaca aaaattgaag agtgagagat 3061 tatcaaccac ctagatcggc taaataaaat ctaccaccaa aactccattt aaaaaaaaaa 3121 tacgttttaa gttaatcaca acaacaattt taaatcaatt gacaaaattt tgatcattca 3181 gcagttgcat actaacctga ccaaccgcca gctacccgcc cgcaaacaaa tcgagaaaag 3241 actaacccac cacacacact accactacag ccccccgatt aacaagcaga acactcatca 3301 aagcaacact agacaaaaac atgctcacac ctaaacacat actcactcac gcttttacaa 3361 aaaccaaact caaagagaga cagagagaga gagagaaaga attttaaatc tctcaaaagc 3421 taatcaccaa acccccaccg tccgaaaatc tcgaaaaatt agacatatca aatacatgat 3481 gatgacagga gatgccaaaa aagagagagt ttttgatata gacaaagaag gagagagaaa 3541 ggagagaact acaacacatg ctgcaaagaa aagatgttca agcgctacac gtggtgatag 3601 aaattcaacg ctagaaggga aaaagctgga cggaaatgaa ggccaaatgt ttggggtcgg 3661 ctgtatgcct tgactcgccg cattaaccaa ctaatctaaa tcgaatcgcc atcgttatcg 3721 aaatctcaag caagaaccaa gcatacggcc accttcaact cccacaacac caataacctt 3781 caacaacaaa agaaaatacg aagaattatt agaatttttt tcctcattta aagaaatcac 3841 actaaaaacg tcttatattt ttattgtcac agttcatctg agatgaatgg attgtaataa 3901 gagtataata atgaataaaa acatattttt gatatttta