Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]

tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA


LOCUS       NP_466332                629 aa            linear   CON 28-AUG-2016
            [Listeria monocytogenes EGD-e].
ACCESSION   NP_466332
VERSION     NP_466332.1
DBLINK      BioProject: PRJNA61583
            Assembly: GCF_000196035.1
DBSOURCE    REFSEQ: accession NC_003210.1
KEYWORDS    RefSeq.
SOURCE      Listeria monocytogenes EGD-e
  ORGANISM  Listeria monocytogenes EGD-e
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Listeriaceae;
            Listeria.
REFERENCE   1  (residues 1 to 629)
  AUTHORS   Toledo-Arana,A., Dussurget,O., Nikitas,G., Sesto,N.,
            Guet-Revillet,H., Balestrino,D., Loh,E., Gripenland,J., Tiensuu,T.,
            Vaitkevicius,K., Barthelemy,M., Vergassola,M., Nahori,M.A.,
            Soubigou,G., Regnault,B., Coppee,J.Y., Lecuit,M., Johansson,J. and
            Cossart,P.
  TITLE     The Listeria transcriptional landscape from saprophytism to
            virulence
  JOURNAL   Nature 459 (7249), 950-956 (2009)
   PUBMED   19448609
REFERENCE   2  (residues 1 to 629)
  AUTHORS   Chatterjee,S.S., Hossain,H., Otten,S., Kuenne,C., Kuchmina,K.,
            Machata,S., Domann,E., Chakraborty,T. and Hain,T.
  TITLE     Intracellular gene expression profile of Listeria monocytogenes
  JOURNAL   Infect. Immun. 74 (2), 1323-1338 (2006)
   PUBMED   16428782
REFERENCE   3  (residues 1 to 629)
  AUTHORS   Glaser,P., Frangeul,L., Buchrieser,C., Amend,A., Baquero,F.,
            Berche,P., Bloecker,H., Brandt,P., Chakraborty,T., Charbit,A.,
            Chetouani,F., Couve,E., de Daruvar,A., Dehoux,P., Domann,E.,
            Dominguez-Bernal,G., Duchaud,E., Durand,L., Dussurget,O.,
            Entian,K.-D., Fsihi,H., Garcia-Del Portillo,F., Garrido,P.,
            Gautier,L., Goebel,W., Gomez-Lopez,N., Hain,T., Hauf,J.,
            Jackson,D., Jones,L.-M., Karst,U., Kreft,J., Kuhn,M., Kunst,F.,
            Kurapkat,G., Madueno,E., Maitournam,A., Mata Vicente,J., Ng,E.,
            Nordsiek,G., Novella,S., de Pablos,B., Perez-Diaz,J.-C., Remmel,B.,
            Rose,M., Rusniok,C., Schlueter,T., Simoes,N., Tierrez,A.,
            Vazquez-Boland,J.-A., Voss,H., Wehland,J. and Cossart,P.
  TITLE     Comparative genomics of Listeria species
  JOURNAL   Science 294 (5543), 849-852 (2001)
   PUBMED   11679669
REFERENCE   4  (residues 1 to 629)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-NOV-2001) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   5  (residues 1 to 629)
  AUTHORS   Glaser,P., Frangeul,L. and Rusniok,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2001) Glaser P., Institut Pasteur, Genomique des
            Microorganismes Pathogenes, 25 rue du Docteur Roux, 75724 Paris
            Cedex 15, FRANCE
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from CAD01023.
            RefSeq Category: Reference Genome
                        FGS: First Genome sequenced
                        MOD: Model Organism
                        UPR: UniProt Genome
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Listeria monocytogenes EGD-e"
                     /strain="EGD-e"
                     /db_xref="taxon:169963"
     Protein         1..629
                     /product="tRNA uridine 5-carboxymethylaminomethyl
                     modification enzyme GidA"
                     /calculated_mol_wt=70006
     Region          4..626
                     /region_name="MnmG"
                     /note="tRNA U34 5-carboxymethylaminomethyl modifying
                     enzyme MnmG/GidA [Translation, ribosomal structure and
                     biogenesis]; COG0445"
                     /db_xref="CDD:440214"
     CDS             1..629
                     /gene="gidA"
                     /locus_tag="lmo2810"
                     /coded_by="complement(NC_003210.1:2892596..2894485)"
                     /experiment="EXISTENCE:[PMID:19448609]"
                     /note="GidA; glucose-inhibited cell division protein A;
                     involved in the 5-carboxymethylaminomethyl modification
                     (mnm(5)s(2)U) of the wobble uridine base in some tRNAs"
                     /transl_table=11
                     /db_xref="GeneID:986685"
CONTIG      join(WP_003725839.1:1..629)
ORIGIN      
        1 mqtydagtfd vivvgaghag veaglasgrm gaktlmltin ldmvafmpcn psvggpakgv
       61 vvreidalgg emgrntdkty iqmrmlntgk gpavralraq adkwdyqhem khtiekeeni
      121 tlrqglvdrl viedgvckgv itnsgaiyya ktvvittgtf srgeiivgel ryssgpnnqq
      181 psvklsehle elgfelrrfk tgtpprvkss tidyskteeq pgddhprafs fdtvemlldq
      241 lpcwltytne ttheiiqanl hrspmftatk kgtgarycps iedkivrfsd kprhqiflep
      301 egknteevyv qglstslpee vqremlrtip glenvemmrv gyaieydavm pdqlwpslet
      361 klveglftag qingtsgyee aagqglmagi naarkvfeke pvilgrdqay igvliddlvt
      421 kgteepyrll tsraeyrlll rhdnadlrlt eigheiglis deryerflak qsaieaeker
      481 lqktrikpta evqamlkeig sgelkdgila adllrrpeit ydkiaqivsr etfvtdeiae
      541 qveiqikyeg yiqksnlqve kmkrmedkki penidydais glatealekl kkieplsiaq
      601 asrisgvnpa disillvyie qgkiakisk