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LOCUS NP_313290 2113 aa linear CON 12-FEB-2021 ACCESSION NP_313290 VERSION NP_313290.1 DBLINK BioProject: PRJNA226 BioSample: SAMN01911278 DBSOURCE REFSEQ: accession NC_002695.2 KEYWORDS RefSeq. SOURCE Escherichia coli O157:H7 str. Sakai ORGANISM Escherichia coli O157:H7 str. Sakai Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 AUTHORS Hayashi,T., Makino,K., Ohnishi,M., Kurokawa,K., Ishii,K., Yokoyama,K., Han,C.G., Ohtsubo,E., Nakayama,K., Murata,T., Tanaka,M., Tobe,T., Iida,T., Takami,H., Honda,T., Sasakawa,C., Ogasawara,N., Yasunaga,T., Kuhara,S., Shiba,T., Hattori,M. and Shinagawa,H. TITLE Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12 JOURNAL DNA Res. 8 (1), 11-22 (2001) PUBMED 11258796 REMARK Erratum:[DNA Res 2001 Apr 27;8(2):96] REFERENCE 2 AUTHORS Yokoyama,K., Makino,K., Kubota,Y., Watanabe,M., Kimura,S., Yutsudo,C.H., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Yoh,M., Iida,T., Ohnishi,M., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and Shinagawa,H. TITLE Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak JOURNAL Gene 258 (1-2), 127-139 (2000) PUBMED 11111050 REFERENCE 3 AUTHORS Ohnishi,M., Murata,T., Nakayama,K., Kuhara,S., Hattori,M., Kurokawa,K., Yasunaga,T., Yokoyama,K., Makino,K., Shinagawa,H. and Hayashi,T. TITLE Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655 JOURNAL Syst. Appl. Microbiol. 23 (3), 315-324 (2000) PUBMED 11108008 REFERENCE 4 AUTHORS Makino,K., Yokoyama,K., Kubota,Y., Yutsudo,C.H., Kimura,S., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Iida,T., Yamamoto,K., Onishi,M., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and Shinagawa,H. TITLE Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak JOURNAL Genes Genet. Syst. 74 (5), 227-239 (1999) PUBMED 10734605 REFERENCE 5 (residues 1 to 2113) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-AUG-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 6 (residues 1 to 2113) AUTHORS Ogura,Y., Kurokawa,K., Hayashi,T. and Hattori,M. TITLE Direct Submission JOURNAL Submitted (26-JUN-2000) Contact:Yoshitoshi Ogura Kyushu University; 31-1 Maidashi Higashi-ku, Fukuoka, Fukuoka 812-8582, Japan COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to BAB38686. On May 10, 2018 this sequence version replased gi: 47118301 This update is obtained as follows: the Sakai genome was resequenced by illumina MiSeq and PacBio RS II sequencers and 78 sites of single base error, 11 sites of insertion (10 one-base insertions and a 141-base insertion) and 16 sites of deletion (14 one-base deletions, a three-base deletion and a six-base deletion) were corrected. Annotation was performed using DFAST auto-annotation system with manual curation. This work was done in collaboration with Tetsuya Hayashi, Makoto Ohnishi, Keisuke Nakayama (Miyazaki Medical College), Kozo Makino, Ken Kurokawa, Katsushi Yokoyama, Masashi Tanaka, Takeshi Honda, Teruo Yasunaga, Hideo Shinagawa (Osaka University), Takahiro Murata (Shinshu University), Chang-Gyun Han, Eiichi Ohtsubo, Toru Tobe, Chihiro Sasakawa (University of Tokyo), Hideto Takami (Japan Marine Science and Technology Center), Naotake Ogasawara (Nara Institute of Science and Technology), Satoru Kuhara (Kuyshu University), and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. Method: conceptual translation. FEATURES Location/Qualifiers source 1..2113 /organism="Escherichia coli O157:H7 str. Sakai" /strain="Sakai" /sub_strain="RIMD 0509952" /serovar="O157:H7" /db_xref="taxon:386585" Protein 1..2113 /product="RNA helicase" /calculated_mol_wt=238103 Region 81..288 /region_name="DEXHc_Hrq1-like" /note="DEAH-box helicase domain of Hrq1 and similar proteins; cd17923" /db_xref="CDD:350681" Site order(105..112,148,234..235) /site_type="other" /note="ATP binding site [chemical binding]" /db_xref="CDD:350681" Region <998..>1126 /region_name="YprA" /note="ATP-dependent helicase YprA, contains C-terminal metal-binding DUF1998 domain [Replication, recombination and repair]; COG1205" /db_xref="CDD:440818" Region 1548..1638 /region_name="MZB" /note="MrfA Zn-binding domain; pfam09369" /db_xref="CDD:462776" CDS 1..2113 /locus_tag="ECs_5263" /coded_by="NC_002695.2:5381703..5388044" /transl_table=11 /db_xref="GeneID:913721" CONTIG join(WP_000937974.1:1..2113) ORIGIN 1 mlpsvvsrqv adsvaaflra afplnsplfn genndnvsml eqflaqpetl lkgpylsaql 61 pfrksdlpln ffpnltlpfp phahqarafq rlgsdapqpt lvatgtgsgk tecfmfplln 121 hcagasqagv kaiiiypmna latdqasrfa ktiasdpqlh gkvtvglfvg dseiepskkm 181 saekvitckh tlresppdil ltnykmldyl lmrpgdqplw rynqpgslry lvvdelhtfd 241 gaqgsdlacl vrrlkhhigv dnqrfacvgt satvgdelgq lldyaktifd qpftddavir 301 edrytaaeyl qnyaiaysqy pgpevasald pqsyatpvay lngqiplwfp dsdlqlpddl 361 esddgrekri algsllrrhs vmhvllhdlq ggilserecl enlqvmlaes adharrvlqs 421 ilaliaqarl evpetehdrq krlqakkarp vlpfvqlrsq lwlremrrlv asvaktprlv 481 faddvavedr ehylpvihcr dchatgwasl rhgqsvqlet dldgiyrqff ekgrsivlaf 541 pdnnekavsg ahqklcptcl klnrqssvqc ghcghtellq vlipdmlker kdelefanec 601 pycnskqgis ilgsraasls avmihqlygs qfnehkklit fsdsvqdaah rasfftartw 661 plmirgqias vlseketlpl dafaarvcqq trerspddah faanviapnm qwlndyqtlk 721 negklaensd lpelvslrld wevyseftlr arigrtleat gyavagvdkd rfnpaitalh 781 qqlceelgde msgvsveqva hlalgviwyq rqagavmhpa fesyrrdgtt fmmtqkerts 841 rympsigpkt rkpayasfek ingfhrliga ksnpswyqhw inrtlsngnn lfissvaetv 901 lrrlftalki agvvkdfdtk greawglvps alvvsrdvvq lncsccrevv rapadqgwqw 961 rnapclslrc egryqevdnt atwrwenmdi arvqgaehtg llsredrevt eksfyrgnqp 1021 wninllsatp tlemgidvgd lstvllcsvp paqanylqri gragrkdgna lnitvaegnp 1081 hdqfffeepl emmqgqvqap gvflnatail erqlaafcmd nwvktgvpes aicknvkqml 1141 delefgrksg fpynllryie qhhaeiaaqf taifpdlaae trqqllsylq gapgqrslvq 1201 rieealkllv edrkslrsri dklkrsidkl enaprdqnfd sdmreltser qalmalvnqi 1261 nnkqtlnflt degllpnyaf peagitlrsv lwrrkeggea reyqnttfey erpastalae 1321 laplnnfyag ghkveieqid lkvsepenwr icshcnysen idqtgdqhky cpkcgtpgwa 1381 dagqkttllk lrqvyarasa rdsqisdesd srepaffqrq llvsfekedv saayaieege 1441 vpfgfeflsk vtlrdinfgk maddanelmi ageakkrtgf kvclgcgmvq rprdheprhd 1501 lsckyrtepe kakfedylyl yrqlesealr illpvssysn drvveaslga aiqlglkhyf 1561 kgnvdhlkgv vyrepenege swrqylviyd tvpggtgslk elmrtpdnll kllelayqai 1621 vecscnndth kdgcyrcvya yrdrgrmkyv srdqarllla kilqardsir vidsiknisl 1681 eammgselek rfisclqenk nlivsrsyah qgagwiintr sepmmswhlk aqvdlgakea 1741 vgipcrpdyv lyplmqsdai kpvaifldgf afhknsvaed vqkrqairds gnfwvwtvtw 1801 adlkepglkh vqdvlglghn pdmkqpkfyn lfhdtnfaal easfrernsf allldyladp 1861 ggrtqlwqrm aaahawvwld vkksqdagtk qkyayemqen apawrlaell pdepfvfggl 1921 ldscnssqqf ielasvlpqq aikpttsvaq mrswlrlhic fddrytqddg yeaglngfwr 1981 lvnllqflpd mtftsrkavh lpqesvdtkv satpeavpet deswaeiief gllsaeeial 2041 lqshslsapt lgyelqndeg eiiaeadlaw psqkwaliid nqefiplftt rgwhvafgpi 2101 dentlqhlsg gdk