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LOCUS XR_011419792 5963 bp RNA linear INV 09-DEC-2024 transcript variant X5, misc_RNA. ACCESSION XR_011419792 VERSION XR_011419792.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5963 /organism="Drosophila takahashii" /mol_type="transcribed RNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5963 /gene="rdgA" /note="retinal degeneration A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056060" misc_RNA 1..5963 /gene="rdgA" /product="retinal degeneration A, transcript variant X5" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:108056060" ORIGIN 1 ttcatttgaa cggtcgacga ggcgtgttgt gctagaaaaa atacctcata taaatagcag 61 aacagccccc aaacaggcca aacatttcaa acaaaaatac aatacaaaac tctctggaac 121 tcaagttctt caactcaaca tcgcccaaaa caaaaacatc tcataccaaa gaaaattaaa 181 aacaaaaact cacaatataa atatatagat taactctttt tttgattgtg cttctaagtg 241 ttgtgctaaa actatattaa cttgtataaa tattcaaaga tattcaaaag tatttaactt 301 atattttcaa aatatccacc taaatgctaa gaaaacaaac tcataactaa cggaaagtta 361 aaaggacaaa aaacataaca gacagtttta agaccaagta catttcgaat ttgtcgtgct 421 ttttgaatcc taactgttga cgcgtaaaac gcacaaaaat gtgcacgaaa ttctcactag 481 actcgaacga ctgaaaagtg cgttccattg aaaataaaaa caaaaactga atgcgaaccg 541 cgcgaaactt ttgattaatt aaaagtaaaa caaaaagccg agagccaacc aagaactggc 601 ttctggcgaa caacaacaaa aacccacaac gagagtcctg aaactcgccc acaagtaact 661 tctcctccag gaagcagcta aacaaaccac aaaaaaaaag gacaacaaaa aaagaataca 721 gaattgagaa aaaattcaac tttgaccgaa caccgaacat cgaaatggaa ttggccatca 781 gaattgtcaa ttcgcagttc gctcgctaca aaaacaacta caacagcaat aacagcaaaa 841 ttcacaccag caatagcaaa gatcgaatca tcgacaacaa cgacgagaac aacaatccca 901 acaatctcaa cagtgacaac aatttaacaa cgataagagc agcagtagag aaaactgcaa 961 ccaccaccgg caacaaccaa tcgacatcag cagcagcaac aacagtagct gcaacttgcg 1021 acaaatttgt attgacaaca acaaccaagc gaaatgcagc agcagcagca acagccgtcc 1081 atcgaccagc tgagcgagcc catagcttcg accagcagcg cggcagcaat taggcaggca 1141 gcagcagcag cagcagcaac atcgacaccg acaacatcgt caacaagcaa caacttccac 1201 cagcaactgc aagcaacaac ggcagcaacc atgcaacgtc tgcgtaccac attcacgcga 1261 tcgcgcactc cgaccggtgc cgaaatgaag atgcagaaca gtttggaggt gcccaagcag 1321 gtgcgctcag cctccttcga cgagatgcaa ttggagtcgc agcgcgcctc ctccagcctg 1381 ctcaagcagc agtcctcatc ctcggcctcg gcggacgaac gctcctcgga ggctggcttc 1441 ctgcaggtcc ccttggcggc ccatcagcag cgatcccata gcttcgattc ggcggccacg 1501 gcctcggggg gcagcgatga ttctgggacc tttctggagg ttccgcgccg cctgaaggct 1561 cgccgcactt cgtccaccaa gacaccgccg ccgtgcatcc attgtcacta tctggaggag 1621 tacgagcgcc tgatgacggc cgaccagcgc tactttatcg atcatcgcga gctgacggcc 1681 ctcagctaca gcaacaccag ctcggagaac agcgaggatg aggacgatgg agaggatgac 1741 gacgaggcca gcagcacggc cattgaggat gccgaggagg agaccactga ggcggctacc 1801 gaggaggcgg acgaagatcc ccgcaccgag gtggagtccg agcacgatca cgatccggat 1861 gacgatgccg ccatggagat ggacatacgc attggcaata tgagcagcca gggcagcagc 1921 atcgaggagt cgcgtgcccg cctgccgcgt caaatgagac gccacaccat cggcagcagt 1981 tcccttgcct cggcgacctc cgaggacgag ggtctcgagg gatcggacaa tggatcgccg 2041 cactttggga ataccctgca gccaccggcc acgccgtgcg gcataacctt tacgctgagc 2101 ccgaccaacg gagactatcc atcgccgccg catctcccct tggatcctgg atcgccgccc 2161 atgtcgccgt gctcctcgaa ctcgatttcc ggtcgcttgc ccgcggatgc cgacgatgcc 2221 ggggcggcca tgggtctgcc ggtgcgggcc agacgtcgat cgatctcgcg acaggaggcc 2281 atattcgtgg agcccaccgg gaactcgctg gagaatgtgt cgcacgagga ggtggacaac 2341 cacagcagca acaataacac caagtcatcg gtggataccg cagattccct cgaggaggcc 2401 tcgaccatgg ccacctgtgg atcaccggga gcggttggtg ggttgggccc ttcgacatcc 2461 tcgggcgctg ttggtggtca tcacaatgct tttgtggtgc gggatattta cctaatggtt 2521 cccgatttga agcgagatcg ggccgcctcc gtcgattctt gcttctccaa gctgtcgtcg 2581 ggcgccaaaa cggaggagct gcaaccaagt gccgatggct gcttcctcac cgtgccgaat 2641 atcaatgcca cacgatcgcg atccgtggac atcgtgctgc ccaccgacga gcaggccagg 2701 tacaaggcct tgtccatgac cggatccacc gtcacctacg ccgatgggcg taccgcttcg 2761 gccagcaatt cccggcgacc cattcgcatt gtgcccgact ggacggagaa tgcagtgcag 2821 ggcgagcact actggaagcc cacctcggcc tccggcgatc tttgctgcct gaacgaggag 2881 tgcattaaaa gcggtcagcg gatgaagtgc tccgcctgcc agctggtcgc gcaccacaac 2941 tgcattccgt ttgtgaacga gaagagcacg ctggcctgca agccgaccta ccgggatgtg 3001 ggcatccggc agtaccggga gcagacaacc acccaccacc attgggtgca ccgcaagctg 3061 gagaagggca agtgcaagca gtgcggcaag ttctttccta tgaagcaggc ggtgcaaagc 3121 aagctatttg ggtcgaagga aattgtggcg ttggcctgtg cgtggtgcca tgagatctac 3181 cacaacaagg aggcctgctt taaccagtcc aaaatcggcg aggagtgtcg tctgggcaac 3241 tatgcgccca tcattgtgcc gccttcgtgg attgtgaagc tgccgagcaa gggcaacttc 3301 aagtcctcga tacgcgtgag caacaagaac aatgccgcct cgggatcagg aggcggggcg 3361 agtggctcgg ggggcggagg aggtggcggt gggggaaaga gcaagaagca gacgcagcga 3421 cggcagaagg gcaaggagga aaagaaggag ccgcgggcgt tcattgtgaa gcccattccg 3481 tcgccggagg taatcccggt cattgtgttt attaatccaa agtcgggcgg caatcagggc 3541 cacaagctgc tgggcaagtt ccagcacctg ctcaatccgc gccaggtgtt cgatcttaca 3601 cagggtggtc ccaaaatggg ccttgatatg ttccgcaagg cgcccaattt gagggtcctg 3661 gcgtgcggag gcgacggcac cgtcggctgg gtcctttccg tcctggacca gatccaaccg 3721 ccgctccaac cagttccggc cgtcggtgtc cttcccttgg gcaccggcaa tgatctcgct 3781 cgcgccctcg gatggggagg gtctatcttc tttcagggct acacggacga accgattggg 3841 aagatattgc gcgagatcgg gatgtcgcag tgcgtgctaa tggaccgctg gcgggtgaag 3901 gtcacgccca acgatgacgt caccgatgac catgtcgacc gcagcaaagc caacgttccc 3961 ctgaacgtca tcaacaacta cttctcgttc ggcgtggacg cgcacatcgc cctggaattc 4021 cacgaggccc gggaggccca tccggagcgc ttcaattcgc ggctgcgcaa caagatgtac 4081 tacggccaga tgggcggcaa ggatctgatc ctgcgccaat atcgcaacct ctcgcagtgg 4141 gtgacgcttg agtgcgatgg ccaggacttt accggaaaac tccgcgacgc cggctgccat 4201 gccgtgctat tcctcaacat tcccagctat ggcggtggca cccacccgtg gaacgactcc 4261 tttggcgcct cgaagccctc gattgacgac ggcctgatgg aggtggtggg tttgaccacc 4321 taccagctgc ctatgctgca ggcgggcatg cacggcacct gcatttgcca gtgccgaaag 4381 gcccggatca tcaccaagcg gaccattccg atgcaggtgg acggggaggc ctgccgcgta 4441 aagccctcgg tgatcgagat cgagctgctg aacaaggcgc tgatgctgtc caaaaggaag 4501 cacggccgcg gcgatgtcca ggtaaatccc ctggagaaaa tgcagctgaa catcttgcgc 4561 gtcaccatgc aacagtacga gcagtaccac tatgacaagg agatgctacg caaattggcc 4621 aacaaactgg gccaaatcga aatcgaatct cagtgcgatt tggagcatgt gcgcaatatg 4681 ctcaatacca agttcgagga atccatctcg tatccgaagg tctcccagga ttggtgcttt 4741 atcgactcct gcaccgcgga gcactacttc cgcatcgatc gtgcccagga gcacctgcac 4801 tacatctgcg acatcgccat cgacgagctg tacatcctgg accacgaggc ggccaccatg 4861 ccgcagactc cggaccagga gcgctccttc gcggccttct cgcagcggca ggcgcagacg 4921 gagcggcgcc aactggatca ggcccagggt cgcggacccg gcagcaccgg taggctcctg 4981 ttagctggct gctggccacc ggcggtgtcc agtcgcaccg ccgacgagct gccgctccag 5041 gagcggctcg agctctacca gcagcaggtg gccgagcagc tgccgtacca agacaggcgc 5101 atgttcctcc acctccactt ccgcaagcgt cgcgtcgaga tctgatttat cctatacaac 5161 ccatatatat atgtatatcc cagtcccaaa aatcccttgc aaattcaaaa gggggagcgg 5221 agtggagtgg agcggaatgc aagttgcagt cggcccacct ttattttcgt tgccttgcat 5281 tttgtttatg gttaatttat gtcttgcatg tcactagtca ctaacatcta cacatagaga 5341 aatccagttg cggtctaaat taatgctcaa aaaaaaattt taaatattta ataattaaat 5401 tgtaaaaagt ataaattgta aatgaagtcg tgctattatt tcgaccgcaa ctgtgcgcat 5461 aaacacacac taacacaccc acacatccgc taaaagtcca agtcttaatt gcgaggagcc 5521 gaatacagct tagtccttgc cacgatcgca tttaacctgt aaacgtagca aggaccaaac 5581 cgtattcgtt acgatcccat ccatcccaac caaaacaacc aaaaacaacc aaccaaccaa 5641 gtaatacaaa aaaaagacac tgaaatatga tatgcgggta ggttaaatgc ctggtagttt 5701 ggacttgttg tgtatttgat ttgatttagt tgtaaaccac ttatttcaat ggcttactaa 5761 caatatgtga atttcttttt gaatttaaaa catacacaaa aaaacacgaa caaaaattga 5821 aacattctaa aacaaaaaaa aacacaaaga tgaggatttg caaattggct ccaagcccat 5881 taaagtgatg aagtggaaga ggtaaaaaag cgtcccccga ttcgttcagc atttcattca 5941 gttcagtcat tcagaccttc aga