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LOCUS XP_017011163 1889 aa linear INV 09-DEC-2024 takahashii]. ACCESSION XP_017011163 VERSION XP_017011163.1 DBLINK BioProject: PRJNA1194641 DBSOURCE REFSEQ: accession XM_017155674.3 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..1889 /organism="Drosophila takahashii" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" Protein 1..1889 /product="DNA-directed RNA polymerase II subunit RPB1" /calculated_mol_wt=209048 Region 15..868 /region_name="RNAP_II_RPB1_N" /note="Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain; cd02733" /db_xref="CDD:259848" Site order(22,26,29..30,77..79,81,92,242,244,246,251..252,310, 331,334..335,338,345,348,350..357,362..364,376,379..380, 449,451,453,457..458,460..461,472..473,475,478,487..490, 492,494,496,499..500,503,506..507,510..511,516,531..532, 535,672..673,761,766..767,772,775..776,785..786,816..817, 819..821,824..825,828..829,831..833,836..837,839..840, 853..854,857,861) /site_type="other" /note="RPB1 - RPB2 interface [polypeptide binding]" /db_xref="CDD:259848" Site order(22..35,40,79..104,237..256,294..300,303..311, 330..346,348..352) /site_type="other" /note="clamp" /db_xref="CDD:259848" Site order(40..44,75,254,256,262..267,269..271,273..274,277, 281,297,300..301,304..305,314..319,322..327,329,334,339, 410,413,417..420,422..424) /site_type="other" /note="RPB1-TFIIB interface [polypeptide binding]" /db_xref="CDD:259848" Site order(67,70,77,80) /site_type="other" /note="Zn-binding [ion binding]" /db_xref="CDD:259848" Site order(100..101,338,343,350,356,452..454,487,489,491, 850..851) /site_type="active" /note="active site region [active]" /db_xref="CDD:259848" Region 890..1071 /region_name="RNA_pol_Rpb1_6" /note="RNA polymerase Rpb1, domain 6; pfam04992" /db_xref="CDD:461511" Region 1050..1468 /region_name="RNAP_II_Rpb1_C" /note="Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain; cd02584" /db_xref="CDD:132720" Site order(1069..1070,1074,1077,1460,1463..1466,1468) /site_type="other" /note="Rpb1 - Rpb6 interaction site [polypeptide binding]" /db_xref="CDD:132720" Site order(1074..1104,1106..1136,1142..1156,1292,1302..1311, 1313,1318..1379,1382..1401,1403..1417) /site_type="active" /note="cleft [active]" /db_xref="CDD:132720" Site order(1078,1081,1282,1286,1432,1442..1444,1450..1451,1453, 1455,1460) /site_type="other" /note="Rpb1 - Rpb2 interaction site [polypeptide binding]" /db_xref="CDD:132720" Site order(1123,1408,1425..1426,1429) /site_type="DNA binding" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:132720" Site order(1340,1346..1347,1349,1359..1365,1367,1387, 1398..1399,1401) /site_type="other" /note="Rpb1 - Rpb5 interaction site [polypeptide binding]" /db_xref="CDD:132720" Site 1417..1458 /site_type="active" /note="clamp [active]" /db_xref="CDD:132720" Region <1475..1864 /region_name="Herpes_BLLF1" /note="Herpes virus major outer envelope glycoprotein (BLLF1); pfam05109" /db_xref="CDD:282904" CDS 1..1889 /gene="Polr2A" /coded_by="XM_017155674.3:355..6024" /db_xref="GeneID:108066911" ORIGIN 1 mstttdskap lrqvkrvqfg ilspdeirrm svteggvqfa etmeggrpkl gglmdprqgv 61 idrtsrcqtc agnmtecpgh fghidlakpv fhigfitkti kilrcvcfyc skmlvsphnp 121 kikeivmksk gqprkrlayv ydlckgktic eggedmdltk enqqpdpnkk pghggcghyq 181 psirrtgldl taewkhpned sqekkivvsa ervweilkhi tdeecfilgm dpkyarpdwm 241 ivtvlpvppl avrpavvmfg aaknqddlth klsdiikann elrkneasga aahviqenik 301 mlqfhvatlv dndmpgmpra mqksgkplka ikarlkgkeg rirgnlmgkr vdfsartvit 361 pdpnlridqv gvprsiaqnl tfpelvtpfn idrmqelvrr gnsqypgaky ivrdngerid 421 lrfhpkssdl hlqcgykver hlrdddlvif nrqptlhkms mmghrvkvlp wstfrmnlsc 481 tspynadfdg demnlhvpqs metraeveni hitprqiitp qankpvmgiv qdtltavrkm 541 tkrdvfitre qvmnllmflp twdgkmpqpc ilkprplwtg kqifsliipg nvnmirthst 601 hpdeeddgpy kwispgdtkv mvehgelimg ilckktlgts agsllhicfl elghdiagrf 661 ygniqtvinn wllleghsig igdtiadpqt yneiqqaikk akddvinviq kahnmelept 721 pgntlrqtfe nkvnrilnda rdktggsakk slteynnlka mvvsgskgsn inisqviacv 781 gqqnvegkri pygfrkrtlp hfikddygpe srgfvensyl agltpsefyf hamggregli 841 dtavktaetg yiqrrlikam esvmvnydgt vrnsvgqliq lrygedglcg elvefqnmpt 901 vklsnkafek rfkfdwsner ymrkvftddv ikemtdssda iqeleaewdr lvadrdslrq 961 ifpngdskvv lpcnlqrmiw nvqkifhink rlptdlspmr vikgvkglle rcvivtgndr 1021 iskqanenat llfqclirst lctkyvseef rlsaeafewl igeietrfqq aqanpgemvg 1081 alaaqslgep atqmtlntfh fagvssknvt lgvprlkeii niskkpkaps ltvfltggaa 1141 rdaekaknvl crlehttlrk vtantaiyyd pdpqrtvise dqefvnvyye mpdfdptris 1201 pwllrieldr krmtdkkltm eqiaekinvg fgedlncifn ddnadklvlr irimnneenk 1261 fqdedeavdk meddmflrci eanmlsdmtl qgieaigkvy mhlpqtdskk rivitetgef 1321 kaigewllet dgtsmmkvls erdvdpirts sndiceifqv lgieavrksv ekemnavlqf 1381 yglyvnyrhl allcdvmtak ghlmaitrhg inrqdtgalm rcsfeetvdv lmdaaahaet 1441 dpmrgvseni imgqlpkmgt gcfdllldae kcrfgieipn tlgssmlgga amfigggstp 1501 smtppmtpwv ncntpryfsp pghvsamtpg gpsfspsaas dasgmspsws pahpgsspss 1561 pgpsmspyfp aspsvspsys ptspnytass pggaspnysp sspnysptsp lyaaasprya 1621 sttpnfnpqs tgyspsssgy sptspvyspt pqfqsspsfa gsgsnlyspg nayspsssny 1681 spnspsyspt spsyspssps ysptspcysp tspsysptsp nytpvtpsys ptspnysasp 1741 hyspaspays qtgvkyspts ptysppspsy dgspgspqyt pgspqyspas pkysptsply 1801 spsspqhsps nqysptgsty satspryspn msiyspsstk ysptsptytp tarnysptsp 1861 mysptapshy sptspaysps sptfeesdd